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	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 41 people tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong D. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted by 32 people colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer kdl Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin GeneGo ksiek carlk
	Protein complex identification by supervised graph local clustering [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268. by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph posted by 4 people adking80 saket carlk neils
	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted by 5 people TRHvidsten grahamc jsuchit carlk saket
	Systems biology: Untangling the protein web [My Copy] Nature, Vol. 460, No. 7253. (15 July 2009), pp. 415-418. by Nathan Blow posted by 16 people Orengo Group Journal Picks robertrentzsch pekrau apocapoc psique leemond31 colmryan reyez carlk guhjy saket tmmurali dswan dullhunk renatomilani agonzale
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted by 13 people carlk chica saket dakelley Orengo Group Journal Picks tomhebbron davidalee leemond31 druvus kiekyon neils tmmurali grahamc
	Disease candidate gene identification and prioritization using protein interaction networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 73. by Jing Chen, Bruce Aronow, Anil Jegga posted by 14 people carlk zufar guhjy Bioinformatics jfr daforerog saket provero mitko neils barriot grahamc renatomilani rjazwiec
	Portraits of Complex Networks [My Copy] (28 Feb 2008) by J. P. Bagrow, E. M. Bollt, J. D. Skufca, D. ben-Avraham posted by 3 people saket jaspervoskuilen carlk
	HISSCLU: a hierarchical density-based method for semi-supervised clustering [My Copy] In EDBT '08: Proceedings of the 11th international conference on Extending database technology (2008), pp. 440-451. by Christian Böhm, Claudia Plant posted by 2 people carlk saket
	An integrated approach to inferring gene-disease associations in humans. [My Copy] Proteins, Vol. 72, No. 3. (15 August 2008), pp. 1030-1037. by P. Radivojac, K. Peng, W. T. Clark, et al.B. J. Peters, A. Mohan, S. M. Boyle, S. D. Mooney posted by 4 people saket carlk yyby guhjy
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted by 5 people carlk saket zwang guhjy chad_davis
	A critical assessment of Mus musculus gene function prediction using integrated genomic evidence [My Copy] Genome Biology, Vol. 9, No. Suppl 1. (2008), S2. by Lourdes P. Castillo, Murat Tasan, Chad Myers, et al.Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W. Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K. Seetharaman, Ziv B. Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth posted by 7 people phoenixzxl saket carlk kgutwin ptrobajo guhjy aconesa
	Modeling protein network evolution under genome duplication and domain shuffling. [My Copy] BMC systems biology, Vol. 1 (2007) by Kirill Evlampiev, Hervé Isambert posted by 3 people saket tomhebbron carlk
	The evolution of modularity in bacterial metabolic networks [My Copy] Proceedings of the National Academy of Sciences (6 May 2008), 0712149105. by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin posted by 14 people rouault ocs hryk qwermish deanmalmgren carlk jjray skato_toyaku mjoach tmmurali phoenixzxl roys pinney saket
	Network-based global inference of human disease genes. [My Copy] Molecular systems biology, Vol. 4 (6 May 2008) by X. Wu, R. Jiang, M. Q. Zhang, S. Li posted by 14 people carlk daforerog ilyashl saket tmmurali diamantis jfr maralena bootsy biomcgary guhjy zwang ptrobajo Borelli
	Evolution and dynamics of protein interactions and networks [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 349-357. by E. Levy, J. Pereiraleal posted by 9 people saket chica carlk paolomarcatili guhjy neils cabbagesofdoom marck zdai
	Hierarchical structure and the prediction of missing links in networks [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 98-101. by Aaron Clauset, Cristopher Moore, M. E. J. Newman posted by 47 people ipark-kaist carlk gtgt15 saket wei_tang Kovanen diamantis cfelipesp orahcio rcrane kubyaddi pbull Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted by 28 people shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	Network properties of genes harboring inherited disease mutations. [My Copy] Proc Natl Acad Sci U S A (7 March 2008) by Igor Feldman, Andrey Rzhetsky, Dennis Vitkup posted by 11 people daforerog frohike carlk saket yyby jeremymiller nolodie guhjy roys maralena ptrobajo
	Evolution of protein domain promiscuity in eukaryotes [My Copy] Genome Res. (29 January 2008), gr.6943508. by Malay K. Basu, Liran Carmel, Igor B. Rogozin, Eugene V. Koonin posted by 11 people swp09 druvus kshameer saket cmzmasek michC neils grahamc zwang carlk dchughes
	The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 3. (22 January 2008), pp. 950-954. by Aviva Presser, Michael B. Elowitz, Manolis Kellis, Roy Kishony posted by 11 people carlk ellarond saket leemond31 robfsouza loukialili pradiptaray cjeans zwang roys phoenixzxl
	Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20449-20453. by John W. Pinney, Grigoris D. Amoutzias, Magnus Rattray, David L. Robertson posted by 8 people carlk biomcgary saket tmmurali grahamc cjeans Pao-Yang hplatero
	Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking [My Copy] Research in Computational Molecular Biology (2007), pp. 92-106. by Joshua Grochow, Manolis Kellis posted by 5 people nurban saket mjoach tmmurali carlk
	From the Cover: The network of sequence flow between protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 28. (10 July 2007), pp. 11627-11632. by Leonid Meyerguz, Jon Kleinberg, Ron Elber posted by 3 people carlk saket j3xucite
	Comparing clusterings—an information based distance [My Copy] Journal of Multivariate Analysis, Vol. 98, No. 5. (May 2007), pp. 873-895. by M. Meila posted by 8 people rumig zchen singhsh sterovetta saket amac carlk vlachmore
	CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1801-1806. by Mattias Jakobsson, Noah A. Rosenberg posted by 4 people saket carlk scryrps ryanraaum
	Systematic discovery of functional modules and context-specific functional annotation of human genome. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i222-229. by Yu Huang, Haifeng Li, Haiyan Hu, et al.Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine J. Zhou posted by 7 people ptrobajo Borelli carlk saket jeremymiller cswinburne cabbagezs
	Reuse of structural domain-domain interactions in protein networks [My Copy] BMC Bioinformatics, Vol. 8 (18 July 2007), 259. by Benjamin Schuster-Bockler, Alex Bateman posted by 3 people zwang carlk saket
	Protein interactions and disease: computational approaches to uncover the etiology of diseases [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 333-346. by Maricel G. Kann posted by 9 people carlk isimpson saket winterschlaefer guhjy tmmurali jfr AbnerCYH barriot
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted by 49 people robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest Network Analysis of Genes Regulated in Renal Diseases daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab shoshin ic4 generif_paper shikin nolodie GomezLab mingzhi carlk yaredo
	Exploring genetic interactions and networks with yeast. [My Copy] Nature reviews. Genetics, Vol. 8, No. 6. (June 2007), pp. 437-449. by Charles Boone, Howard Bussey, Brenda J. Andrews posted by 13 people saket nzm sarahbates mtaschuk Petersarkies lp2 Annab balajis zwang carlk guhjy marck hryk
	Clustering by common friends finds locally significant proteins mediating modules [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1124-1131. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder posted by 3 people saket carlk zwang
	An information-theoretic framework for resolving community structure in complex networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 18. (1 May 2007), pp. 7327-7331. by Martin Rosvall, Carl T. Bergstrom posted by 10 people AaronMcDaid vtraag cgaugain Kovanen dakelley saket paultr AbnerCYH marcio carlk
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted by 26 people ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes structural_bioinformatics kdl cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted by 7 people dfdong qluo marti cerca phoenixzxl carlk saket
	Comparison of protein interaction networks reveals species conservation and divergence [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 October 2006), 457. by Zhi Liang, Meng Xu, Maikun Teng, Liwen Niu posted by 9 people thegoose saket thegoose2 C. elegans / WormBase tharris balajis biehl cerca carlk
	Finding function: evaluation methods for functional genomic data [My Copy] BMC Genomics, Vol. 7 (25 July 2006), 187. by Chad L. Myers, Daniel R. Barrett, Matthew A. Hibbs, Curtis Huttenhower, Olga G. Troyanskaya posted by 11 people saket tjimenez jfr smbaxtersf grahamc dejori ic4 generif_paper carlk marck cerca
	Relating whole-genome expression data with protein-protein interactions. [My Copy] Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46. by R. Jansen, D. Greenbaum, M. Gerstein posted by 11 people saket Robinder gurkanbebek gespim grahamc cjeans iris_2001 kintoki paolomarcatili nedwards carlk
	Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (26 April 2006), 7. by Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka posted by 6 people carlk saket lfriedl chad_davis kdl AbnerCYH
	Graph Theory and Networks in Biology [My Copy] (6 Apr 2006) by Oliver Mason, Mark Verwoerd posted by 14 people diamantis saket imouthesmp BarrosH onyx lshaw karfunkel ptpases carlk Borelli ilkert ansobol mjoach dpf
	Information-based clustering [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 51. (20 December 2005), pp. 18297-18302. by Noam Slonim, Gurinder S. Atwal, Gašper Tkačik, William Bialek posted by 13 people carlk saket tmmurali kuhn textoris okarsligil bayesian balicea jdiggans dylan77 nklee Bioinformatics quianominorleo
	The small-world phenomenon: an algorithm perspective [My Copy] In STOC '00: Proceedings of the thirty-second annual ACM symposium on Theory of computing (2000), pp. 163-170. by Jon Kleinberg posted by 13 people jabl matteodellamico AbnerCYH muraken jaspervoskuilen emersonmello ransombriggs dstrelau GCSeg gvdh carlk saket chibatching
	Co-clustering of biological networks and gene expression data [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S145-154. by Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer posted by 5 people poirel saket chad_davis srp33 carlk
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted by 30 people karthikraman roys Modularity in evolutionary algorithms rsantana vtraag anphony ocs saket mcphee marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn phreeza stefanoallesina carlk
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted by 32 people sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller C. elegans / WormBase tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience vertikalist BTS-PT-AS-CS
	Uncovering the overlapping community structure of complex networks in nature and society [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 814-818. by Gergely Palla, Imre Derenyi, Illes Farkas, Tamas Vicsek posted by 22 people carlk hendysh rst colmryan saket haewoon theshadowhost kuhn jfr lfriedl wilmegape gcalda ltabourier michaelmampaey Scis0000002 kdl ADMiRes maralena lmichan ellakat tmmurali betaparticle
	Detection of functional modules from protein interaction networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 54, No. 1. (1 January 2004), pp. 49-57. by Jose B. Pereira-Leal, Anton J. Enright, Christos A. Ouzounis posted by 5 people saket carlk ujh opheliav wnpx
	Charging it up: global analysis of protein phosphorylation [My Copy] Trends in Genetics, Vol. 22, No. 10. (12 October 2006), pp. 545-554. by J. Ptacek, M. Snyder posted by 5 people saradtc guhjy koller neils carlk
	Pairwise alignment of protein interaction networks. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 13, No. 2. (March 2006), pp. 182-199. by Mehmet Koyutürk, Yohan Kim, Umut Topkara, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama posted by 6 people sergiun babakap cswinburne balajis koller carlk
	Evolution and topology in the yeast protein interaction network. [My Copy] Genome Res, Vol. 14, No. 7. (July 2004), pp. 1310-1314. by S. Wuchty posted by 3 people koller carlk friendpine
	BioGRID: a general repository for interaction datasets. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by C. Stark, B. J. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, M. Tyers posted by 16 people tienholin TheresaNiederberger allysonlister csanford cerca guhjy balajis koller nm lpfernandes Evangelia chasmand carlk dragonrez tmmurali dylanwalker
	Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes [My Copy] PLoS Comput Biol, Vol. 2, No. 8. (4 August 2006), e100. by Chad Haynes, Christopher J. Oldfield, Fei Ji, et al.Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva posted by 5 people agustinarce indigoviolet koller EisenLab carlk
	Design principles of molecular networks revealed by global comparisons and composite motifs [My Copy] Genome Biology, Vol. 7 (19 July 2006), R55. by Haiyuan Yu, Yu Xia, Valery Trifonov, Mark Gerstein posted by 9 people carlk indigoviolet koller jdiggans EisenLab Takayuki beete vertikalist BTS-PT-AS-CS
	Efficient algorithms for detecting signaling pathways in protein interaction networks. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 13, No. 2. (March 2006), pp. 133-144. by Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan posted by 5 people wnpx gurkanbebek koller iris_2001 carlk
	Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. [My Copy] Science, Vol. 287, No. 5454. (4 February 2000), pp. 873-880. by C. J. Roberts, B. Nelson, M. J. Marton, et al.R. Stoughton, M. R. Meyer, H. A. Bennett, Y. D. He, H. Dai, W. L. Walker, T. R. Hughes, M. Tyers, C. Boone, S. H. Friend posted by 6 people SarahW kristallreiner nirfriedman noano koller carlk
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted by 22 people carlk snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz kdl EBI-regulation shikin s041629 GeneGo pmendes mtruksa chasmand
	Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits [My Copy] Annual Review of Biochemistry, Vol. 75, No. 1. (17 March 2006), pp. 655-680. by Roby P. Bhattacharyya, Attila Reményi, Brian J. Yeh, Wendell A. Lim posted by 15 people dfdong chica tomhebbron Scis0000002 mmcclean laurabailey rklancer matzke imouthesmp choonpeng koller cjeans melting carlk gulkur
	Systematic identification of functional orthologs based on protein network comparison [My Copy] Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 428-435. by Sourav Bandyopadhyay, Roded Sharan, Trey Ideker posted by 7 people cerca kiekyon swp09 j3xucite koller iris_2001 carlk
	Target hub proteins serve as master regulators of development in yeast. [My Copy] Genes Dev, Vol. 20, No. 4. (15 February 2006), pp. 435-448. by A. R. Borneman, J. A. Leigh-Bell, H. Yu, P. Bertone, M. Gerstein, M. Snyder posted by 5 people nickluscombe aswin koller EBI-regulation carlk
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted by 24 people chica akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel T_lab mingzhi vietanh0 cdeane carlk
	Identification and analysis of evolutionarily cohesive functional modules in protein networks. [My Copy] Genome Res (31 January 2006) by Mónica Campillos, Christian von Mering, Lars Juhl J. Jensen, Peer Bork posted by 11 people Garamonfok lfriedl balajis nirfriedman nickluscombe koller dbgoodman kdl EBI-regulation larsjuhljensen carlk
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted by 14 people chica mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne dIEMoSIRIS phoenixzxl larsjuhljensen carlk gjuggler
	Global analysis of protein phosphorylation in yeast [My Copy] Nature, Vol. 438, No. 7068., pp. 679-684. by Jason Ptacek, Geeta Devgan, Gregory Michaud, et al.Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R. Mccartney, Martin C. Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S. Mah, Lihao Meng, Michael J. R. Stark, David F. Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F. Predki, Michael Snyder posted by 13 people rsaito nedwards coela nzm MarcJungbluth tmmurali tuck balabu nickluscombe koller EBI-regulation carlk neils
	Global analysis of protein localization in budding yeast [My Copy] Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691. by Won-Ki Huh, James V. Falvo, Luke C. Gerke, et al.Adam S. Carroll, Russell W. Howson, Jonathan S. Weissman, Erin K. O'Shea posted by 18 people Shibby MarcJungbluth thegoose2 mmcclean carlk C. elegans / WormBase tharris Cortel lfriedl opheliav rebeccahainess nirfriedman hplatero gurkanbebek koller raiyar iris_2001 kdl
	Analysis of optimality in natural and perturbed metabolic networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 23. (12 November 2002), pp. 15112-15117. by D. Segrè, D. Vitkup, G. M. Church posted by 9 people michaelbarton rklancer nirfriedman koller gcalda kdang roys carlk JeremyZucker
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted by 18 people myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller frohike kdl Bioinformatics carlk
	Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network [My Copy] Journal of Biology, Vol. 4, No. 2. (2005), 6. by Lan Zhang, Oliver King, Sharyl Wong, et al.Debra Goldberg, Amy Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick Roth posted by 13 people colmryan lfriedl marcora jjray ssb benny nirfriedman koller iris_2001 gwcarter kdl carlk ksiek
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted by 16 people kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris wnpx noano koller ccr cdppublications CDP AlexanderPico carlk jago
	Effect of sampling on topology predictions of protein-protein interaction networks. [My Copy] Nature biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844. by Jing-Dong D. Han, Denis Dupuy, Nicolas Bertin, Michael E. Cusick, Marc Vidal posted by 16 people wiedenhoeft csanford diamantis cerca snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
	STRING: known and predicted protein-protein associations, integrated and transferred across organisms. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by C. von Mering, L. J. Jensen, B. Snel, et al.S. D. Hooper, M. Krupp, M. Foglierini, N. Jouffre, M. A. Huynen, P. Bork posted by 10 people kuhn lfriedl nickluscombe koller iris_2001 kdl EBI-regulation Evangelia larsjuhljensen carlk
	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. [My Copy] Genome research, Vol. 14, No. 6. (June 2004), pp. 1107-1118. by Haiyuan Yu, Nicholas M. Luscombe, Hao Xin X. Lu, et al.Xiaowei Zhu, Yu Xia, Jing-Dong D. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, Mark Gerstein posted by 14 people kiekyon rsaito thegoose2 robfsouza carlk C. elegans / WormBase tharris bicko dragonrez chad_davis balajis koller cjeans cerca
	Systematic interpretation of genetic interactions using protein networks [My Copy] Nat Biotech, Vol. 23, No. 5. (05 May 2005), pp. 561-566. by Ryan Kelley, Trey Ideker posted by 24 people colmryan nzm dakelley chasmand ajbattle mtaschuk benjaminsb lptolik nedwards okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt koller massivemayhem patrycjam patrycja_missiuro Bioinformatics EBI-regulation mingzhi carlk
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted by 18 people stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx nickluscombe koller frohike karfunkel EBI-regulation roys dquest balicea carlk tvdbulck
	PathBLAST: a tool for alignment of protein interaction networks. [My Copy] Nucleic acids research, Vol. 32, No. Web Server issue. (1 July 2004) by Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker posted by 8 people chica sergiun sza dragonrez nuke2005 AbnerCYH koller carlk
	A global view of the selection forces in the evolution of yeast cis-regulation. [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 829-834. by A. Tanay, I. Gat-Viks, R. Shamir posted by 3 people briann koller carlk
	Network motifs in integrated cellular networks of transcriptionâregulation and proteinâprotein interaction [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 16. (20 April 2004), pp. 5934-5939. by Esti Yeger-Lotem, Shmuel Sattath, Nadav Kashtan, et al.Shalev Itzkovitz, Ron Milo, Ron Y. Pinter, Uri Alon, Hanah Margalit posted by 17 people nurban sergiun cswinburne camster snuppepuppan dbk korakot LeightonP hununu jtextori koller streptomyces Philosophy_of_Information dbk-lab Blog_and_Wiki_Research maralena carlk
	Genomic analysis of regulatory network dynamics reveals large topological changes. [My Copy] Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312. by N. M. Luscombe, M. M. Babu, H. Yu, M. Snyder, S. A. Teichmann, M. Gerstein posted by 33 people bioNetwork_sysBio joseph_x_zhou kentz behindtherabbit BTS-PT-AS-CS vertikalist camster snuppepuppan hununu icases lna lfriedl alexg nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank cjeans rebeccamancy dbk-lab kdl EBI-regulation TNT ColDyn Plantandetc faion carlk
	Computational Identification of Potential Molecular Interactions in Arabidopsis [My Copy] Plant Physiol., Vol. 151, No. 1. (1 September 2009), pp. 34-46. by Mingzhi Lin, Bin Hu, Lijuan Chen, et al.Peng Sun, Yi Fan, Ping Wu, Xin Chen posted by 1 person carlk
	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted by 5 people carlk tmmurali djkt lp2 ptrobajo
	A novel scoring approach for protein co-purification data reveals high interaction specificity. [My Copy] PLoS computational biology, Vol. 5, No. 9. (September 2009) by Xueping Yu, Joseph Ivanic, Anders Wallqvist, Jaques Reifman posted by 3 people grahamc snow_dragon carlk
	Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study [My Copy] NeuroImage (26 September 2009) by William S. Kremen, Elizabeth Prom-Wormley, Matthew S. Panizzon, et al.Lisa T. Eyler, Bruce Fischl, Michael C. Neale, Carol E. Franz, Michael J. Lyons, Jennifer Pacheco, Michele E. Perry posted by 1 person carlk
	Exploration of Uncharted Regions of the Protein Universe [My Copy] PLoS Biol, Vol. 7, No. 9. (29 September 2009), e1000205. by Lukasz Jaroszewski, Zhanwen Li, Sri S. Krishna, et al.Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik posted by 8 people kiekyon Orengo Group Journal Picks CorinYeats carlk bpcusack Journal picks ppgardne druvus
	A cell surface interaction network of neural leucine-rich repeat receptors. [My Copy] Genome biology, Vol. 10, No. 9. (18 September 2009), R99. by Christian Söllner, Gavin J. Wright posted by 2 people grahamc carlk
	Note on robust critical graphs with large odd girth [My Copy] Discrete Mathematics (19 April 2009) by E. Năstase, V. Rödl, M. Siggers posted by 1 person carlk
	Circuits through prescribed vertices in <I>k</I>-connected <I>k</I>-regular graphs [My Copy] Journal of Graph Theory, Vol. 39, No. 2. (2002), pp. 145-163. by Roland Häggkvist, Wolfgang Mader posted by 1 person carlk
	Nonseparating cycles in <I>K</I>-Connected graphs [My Copy] Journal of Graph Theory, Vol. 5, No. 4. (1981), pp. 351-354. by Carsten Thomassen posted by 1 person carlk
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted by 11 people Orengo Group Journal Picks meanerelk abc623 Borelli carlk bdessailly sotacam kiekyon druvus BergmanLab daveGerrard
	Structure of Heterogeneous Networks [My Copy] (11 Jun 2009) by Rumi Ghosh, Kristina Lerman posted by 1 person carlk
	Understanding Modularity in Molecular Networks Requires Dynamics [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), pe44. by Roger P. Alexander, Philip M. Kim, Thierry Emonet, Mark B. Gerstein posted by 3 people carlk jhyang Borelli
	Model-Based Clustering for Image Segmentation and Large Datasets via Sampling [My Copy] Journal of Classification, Vol. 21, No. 2. (1 September 2004), pp. 231-253. by Ron Wehrens, Lutgarde M. C. Buydens, Chris Fraley, Adrian E. Raftery posted by 1 person carlk
	GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development. [My Copy] Nucleic acids research, Vol. 25, No. 1. (1 January 1997), pp. 67-71. by B. Jacq, F. Horn, F. Janody, et al.N. Gompel, O. Serralbo, E. Mohr, C. Leroy, B. Bellon, L. Fasano, P. Laurenti, L. Röder posted by 1 person carlk
	Sequence patches on MAPK surfaces define protein-protein interactions. [My Copy] Genome biology, Vol. 10, No. 6. (5 June 2009) by Gary L. Johnson, Shawn M. Gomez posted by 2 people carlk higueruelo
	The conservation and evolutionary modularity of metabolism [My Copy] Genome Biology, Vol. 10, No. 6. (12 June 2009), R63. by Jose P. Alvarez, Chris Sanford, John Parkinson posted by 11 people venancio carlk adampah Orengo Group Journal Picks bdessailly barriot biomcgary michaelbarton Winzer tomhebbron grahamc
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted by 17 people carlk polivares inesdesantiago taylor73 Orengo Group Journal Picks ollieredfernwork nuin Mycology stajich iSEEM sriesenfeld idoerg guhjy chrisamiller jmeppley neils druvus
	A comprehensive multi-local-world model for complex networks [My Copy] Physics Letters A, Vol. 373, No. 18-19. (20 April 2009), pp. 1601-1605. by Zhengping Fan, Guanrong Chen, Yunong Zhang posted by 1 person carlk
	Model-Based Hierarchical Clustering [My Copy] In In Proc. 16th Conf. Uncertainty in Artificial Intelligence (2000), pp. 599-608. by Shivakumar Vaithyanathan, Byron Dom posted by 1 person carlk
	Modulated modularity clustering as an exploratory tool for functional genomic inference. [My Copy] PLoS genetics, Vol. 5, No. 5. (8 May 2009), e1000479. by Eric A. Stone, Julien F. Ayroles posted by 6 people carlk rdiaz Morgan Lab-KSU theodorejmorgan roys tmmurali
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted by 6 people colm ess30 carlk apocapoc grahamc colmryan
	From Rapid Place Learning to Behavioral Performance: A Key Role for the Intermediate Hippocampus [My Copy] PLoS Biology, Vol. 7, No. 4. (1 April 2009), e89. by Tobias Bast, Iain A. Wilson, Menno P. Witter, Richard G. Morris posted by 2 people sen_cheng carlk
	A Computational Framework for Ultrastructural Mapping of Neural Circuitry [My Copy] PLoS Biology, Vol. 7, No. 3. (1 March 2009), e74. by James R. Anderson, Bryan W. Jones, Jia-Hui Yang, et al.Marguerite V. Shaw, Carl B. Watt, Pavel Koshevoy, Joel Spaltenstein, Elizabeth Jurrus, Kannan Uv, Ross T. Whitaker, David Mastronarde, Tolga Tasdizen, Robert E. Marc posted by 1 person carlk