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	R/BHC: fast Bayesian hierarchical clustering for microarray data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (6 August 2009), 242. by Richard Savage, Katherine Heller, Yang Xu, et al.Zoubin Ghahramani, William Truman, Murray Grant, Katherine Denby, David Wild posted by 12 people ptrobajo meanerelk nuin rdiaz guhjy Bioinformatics lwaldron rschulz phoenixzxl barriot RamuAnandakrishnan erexhepa
	Prediction of protein-protein interaction sites using an ensemble method [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 426. by Lei Deng, Jihong Guan, Qiwen Dong, Shuigeng Zhou posted by 5 people conkymacro kshameer ashishanand barriot phoenixzxl
	Comparison of phylogenetic trees through alignment of embedded evolutionary distances [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 423. by Kwangbom Choi, Shawn Gomez posted by 4 people Geknitics kshameer barriot nuin
	The ontology of biological sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (18 November 2009), 377. by Robert Hoehndorf, Janet Kelso, Heinrich Herre posted by 15 people xili03 Orengo Group Journal Picks sillitoe dswan cjm richardbickerton druvus guhjy operon mjbell allysonlister kshameer barriot Journal picks dullhunk
	FIGfams: yet another set of protein families. [My Copy] Nucleic acids research, Vol. 37, No. 20. (1 November 2009), pp. 6643-6654. by Folker Meyer, Ross Overbeek, Alex Rodriguez posted by 8 people Orengo Group Journal Picks davidalee barriot kshameer neils timhubbard Journal picks ppgardne
	Automated seeding of specialised wiki knowledgebases with BioKb [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 291. by Jonathan Manning, Ann Hedley, John Mullins, Donald Dunbar posted by 10 people Bioinformatics Core Service jforment perkeo agonzale kshameer ptrobajo neils dullhunk barriot druvus
	A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000465. by Yuzhen Ye, Thomas G. Doak posted by 8 people mstumpf ptrobajo barriot rdiaz michaelbarton kshameer iSEEM djkt
	Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (5 August 2009), 240. by Tao Xu, JianLei Gu, Yan Zhou, LinFang Du posted by 10 people dipenps rdiaz tonamswish guhjy lwaldron dswan RamuAnandakrishnan barriot kshameer renatomilani
	Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 241. by Kevin Yip, Philip Kim, Drew McDermott, Mark Gerstein posted by 11 people richardbickerton flbarroso zwang Simulation of operations and interactions jago gwallau installe barriot kshameer peteruetz phoenixzxl
	MIMAS 3.0 is a Multiomics Information Management and Annotation System. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 151. by Alexandre Gattiker, Leandro Hermida, Robin Liechti, et al.Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig posted by 10 people frohike daforerog guhjy ddunbar druvus allysonlister AlexBateman kshameer barriot neils
	An innovative approach for testing bioinformatics programs using metamorphic testing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Tsong Y. Chen, Joshua Ho, Huai Liu, Xiaoyuan Xie posted by 12 people rdiaz lptolik Structural Biology Group TorVergata oteri guhjy nuin druvus pkonings kshameer jmeppley barriot agbiotec
	DNAPlotter: circular and linear interactive genome visualization [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 119-120. by Tim Carver, Nick Thomson, Alan Bleasby, Matthew Berriman, Julian Parkhill posted by 16 people darian kshameer jandot BergmanLab cisevol ewilban1 orzenil Bioinformatics dswan barriot guhjy nuin natstreet GustavoLacerda druvus treangen
	Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 472. by Tao Xu, LinFang Du, Yan Zhou posted by 8 people Borsti MarcoAlvarez sgoetz cgaugain saket kshameer barriot phoenixzxl
	Big data: The future of biocuration [My Copy] Nature, Vol. 455, No. 7209. (03 September 2008), pp. 47-50. by Doug Howe, Maria Costanzo, Petra Fey, et al.Takashi Gojobori, Linda Hannick, Winston Hide, David P. Hill, Renate Kania, Mary Schaeffer, Susan St Pierre, Simon Twigger, Owen White, Seung Yon Rhee posted by 26 people welliegirl mtaschuk applebyb shankark abhishek_tiwari kshameer barriot eesruiz daforerog allysonlister guhjy jfr lindenb natstreet christoph_steinbeck thomaskelder druvus vobios hpiwowar amarois Roswell Cancer Crosstalk Zephyrus psique fgibson dullhunk neils
	Predicting Pathway Membership via Domain Signatures [My Copy] Bioinformatics (1 August 2008), btn403. by Holger Frohlich, Mark Fellmann, Holger Sultmann, Annemarie Poustka, Tim Beissbarth posted by 10 people le-gal druvus jameswasmuth kshameer jfr barriot ptrobajo mdstobbe phoenixzxl guhjy
	Lost in translation: an assessment and perspective for computational microRNA target identification [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3049-3055. by Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou posted by 24 people renatomilani fstrozzi Orengo Group Journal Picks jperkins Bioinformatics Core Service jforment hyojinkang apaydin Bioinformatics - CRUK Stew guhjy pattersonee Jporci heliopais Journal picks kintoki dswan dandaman kshameer lwaldron toni_marco frohike lp2 daforerog
	OpenFlyData: The Way to Go for Biological Data Integration [My Copy] Data Integration in the Life Sciences (2009), pp. 47-54. by Jun Zhao, Alistair Miles, Graham Klyne, David Shotton posted by 4 people brembs kshameer gthorisson dullhunk
	Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network [My Copy] Genome Biology, Vol. 10, No. 9. (03 September 2009), R91. by Bolan Linghu, Evan Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi posted by 8 people mchelen fstrozzi Orengo Group Journal Picks bdessailly farhat saket daforerog barriot
	Predicting cancer involvement of genes from heterogeneous data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Ramon Aragues, Chris Sander, Baldo Oliva posted by 14 people ilyashl dcolosi Translational Bioinformatics jakechen nolodie shigepong barriot renatomilani smgomez GomezLab henryk69 reyez cerami aheilbut
	Effects of dependence in high-dimensional multiple testing problems [My Copy] BMC Bioinformatics, Vol. 9 (25 February 2008), 114. by Kyung I. Kim, Mark A. van de Wiel posted by 4 people guhjy shigepong barriot jfr
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted by 13 people fstrozzi manduca Journal picks djkt rdiaz sjcockell torfinnnome walshtp nuin natstreet druvus Orengo Group Journal Picks ollieredfernwork
	A biosegmentation benchmark for evaluation of bioimage analysis methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 368. by Elisa D. Gelasca, Boguslaw Obara, Dmitry Fedorov, Kristian Kvilekval, B. Manjunath posted by 1 person erexhepa
	Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 354. by Aristotelis Chatziioannou, Panagiotis Moulos, Fragiskos N. Kolisis posted by 5 people Orengo Group Journal Picks sillitoe dswan erexhepa frohike
	Exploratory and inferential analysis of gene cluster neighborhood graphs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 288. by Theresa Scharl, Ingo Voglhuber, Friedrich Leisch posted by 3 people rdiaz erexhepa ngehlenborg
	A distinct macrophage population mediates metastatic breast cancer cell extravasation, establishment and growth. [My Copy] PloS one, Vol. 4, No. 8. (10 August 2009), e6562. by Binzhi Qian, Yan Deng, Jae Hong H. Im, et al.Ruth J. Muschel, Yiyu Zou, Jiufeng Li, Richard A. Lang, Jeffrey W. Pollard posted by 2 people whz2emuch erexhepa
	Learning Object Location Predictors with Boosting and Grammar-Guided Feature Extraction [My Copy] (24 Jul 2009) by Damian Eads, Edward Rosten, David Helmbold posted by 1 person erexhepa
	A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (10 July 2009), 213. by Bjoern Menze, B. Michael Kelm, Ralf Masuch, et al.Uwe Himmelreich, Peter Bachert, Wolfgang Petrich, Fred Hamprecht posted by 2 people rdiaz erexhepa
	Error statistics of hidden Markov model and hidden Boltzmann model results [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 212. by Lee Newberg posted by 3 people rdiaz erexhepa RamuAnandakrishnan
	Ensemble approach to predict specificity determinants: benchmarking and validation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 207. by Saikat Chakrabarti, Anna Panchenko posted by 3 people qluo reyez erexhepa
	A Bayesian approach to efficient differential allocation for resampling-based significance testing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 198. by Shane T. Jensen, Sameer Soi, Li-San S. Wang posted by 10 people enelkinsan Bioinformatics jfr guhjy rdiaz ptrobajo sotacam sameersoi jmeppley erexhepa
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted by 9 people jfr zufar Bioinformatics dswan shikin lwaldron rdiaz bertelsen erexhepa
	geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 187. by Daniel G. Pena, Fernando Diaz, Jesus Hernandez, Juan Corchado, Florentino F. Riverola posted by 6 people jfr rdiaz guhjy brianb nuin erexhepa
	Automated genome mining for natural products [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 185. by Michael Li, Peter Ung, James Zajkowski, Sylvie G. Tsodikova, David Sherman posted by 7 people bcondon mitko orzenil gillianturgeon operon erexhepa neils
	Transmembrane protein topology prediction using support vector machines [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 159. by Timothy Nugent, David Jones posted by 4 people sebk chocolate2009 TRHvidsten erexhepa
	Tableau-based protein substructure search using quadratic programming [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 153. by Alex Stivala, Anthony Wirth, Peter Stuckey posted by 3 people TRHvidsten erexhepa reyez
	flowClust: a Bioconductor package for automated gating of flow cytometry data. [My Copy] BMC bioinformatics, Vol. 10 (14 May 2009), 145. by Kenneth Lo, Florian Hahne, Ryan R. Brinkman, Raphael Gottardo posted by 4 people guhjy rgottardo VGreiff erexhepa
	Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (14 May 2009), 144. by Niclas Tan, Wayne Fisher, Kevin Rosenblatt, Harold Garner posted by 4 people olberd nuin erexhepa neils
	Identification of differentially expressed subnetworks based on multivariate ANOVA [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 April 2009), 128. by Taeyoung Hwang, Taesung Park posted by 8 people rdiaz guhjy Bioinformatics lwaldron TRHvidsten grahamc renatomilani erexhepa
	Automated FingerPrint Background removal: FPB [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 127. by Simone Scalabrin, Michele Morgante, Alberto Policriti posted by 2 people erexhepa sficklin
	flowCore: a Bioconductor package for high throughput flow cytometry. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 106. by Florian Hahne, Nolwenn LeMeur, Ryan R. Brinkman, et al.Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman posted by 3 people VGreiff guhjy erexhepa
	Prediction of breast cancer by profiling of urinary RNA metabolites using SVM-based feature selection [My Copy] BMC Cancer, Vol. 9, No. 1. (2009), 104. by Carsten Henneges, Dino Bullinger, Richard Fux, et al.Natascha Friese, Harald Seeger, Hans Neubauer, Stefan Laufer, Christoph Gleiter, Matthias Schwab, Andreas Zell, Bernd Kammerer posted by 1 person erexhepa
	TLE3 as a candidate biomarker of response to taxane therapy [My Copy] Breast Cancer Research, Vol. 11 (23 March 2009), R17. by Swati, Douglas T. Ross posted by 1 person erexhepa
	Statistical and visual differentiation of subcellular imaging. [My Copy] BMC bioinformatics, Vol. 10 (22 March 2009), 94. by Nicholas A. Hamilton, Jack T. Wang, Markus C. Kerr, Rohan D. Teasdale posted by 4 people camargoj erexhepa brianb neils
	Decomposing complex reaction networks using random sampling, principal component analysis, and basis rotation [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009) by Christian Barrett, Markus Herrgard, Bernhard Palsson posted by 2 people erexhepa VGreiff
	Adaptable data management for systems biology investigations. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 79. by John Boyle, Hector Rovira, Chris Cavnor, David Burdick, Sarah Killcoyne, Ilya Shmulevich posted by 12 people agomez JeremyZucker daforerog allysonlister guhjy lptolik renatomilani fgibson sjcockell erexhepa VGreiff druvus
	RGG: a general GUI Framework for R scripts. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 74. by Ilhami Visne, Erkan Dilaveroglu, Klemens Vierlinger, et al.Martin Lauss, Ahmet Yildiz, Andreas Weinhaeusel, Christa Noehammer, Friedrich Leisch, Albert Kriegner posted by 27 people ltitodem operon jfr daforerog natstreet guhjy lwaldron Yanno rdiaz siebert nuin trfield pengchy acj2109 Mycology stajich jmeppley fpattyn VGreiff renatomilani BergmanLab cisevol erexhepa Bioinformatics dswan jandot druvus
	NIFTI: an evolutionary approach for finding number of clusters in microarray data. [My Copy] BMC bioinformatics, Vol. 10 (30 January 2009), 40. by S. Jonnalagadda, R. Srinivasan posted by 3 people jfr awarlau erexhepa
	Nuclear staining and relative distance for quantifying epidermal differentiation in biomarker expression profiling [My Copy] BMC Bioinformatics, Vol. 9 (06 November 2008), 473. by Thora Pommerencke, Thorsten Steinberg, Hartmut Dickhaus, Pascal Tomakidi, Niels Grabe posted by 2 people kittipat erexhepa
	MetaFIND: A feature analysis tool for metabolomics data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Kenneth Bryan, Lorraine Brennan, Padraig Cunningham posted by 3 people guhjy nuin erexhepa
	A candidate molecular signature associated with tamoxifen failure in primary breast cancer. [My Copy] Breast cancer research : BCR, Vol. 10, No. 5. (17 October 2008), R88. by Julie A. Vendrell, Katherine E. Robertson, Patrice Ravel, et al.Susan E. Bray, Agathe Bajard, Colin A. Purdie, Catherine Nguyen, Sirwan M. Hadad, Ivan Bieche, Sylvie Chabaud, Thomas Bachelot, Alastair M. Thompson, Pascale A. Cohen posted by 5 people tonamswish jfr erexhepa Breast Cancer Reading Club Zephyrus
	Computer-assisted assessment of the Human Epidermal Growth Factor Receptor 2 immunohistochemical assay in imaged histologic sections using a membrane isolation algorithm and quantitative analysis of positive controls [My Copy] BMC Medical Imaging, Vol. 8 (05 June 2008), 11. by Bonnie H. Hall, Monica Ianosi-Irimie, Parisa Javidian, Wenjin Chen, Shridar Ganesan, David J. Foran posted by 1 person erexhepa
	StAR: a simple tool for the statistical comparison of ROC curves [My Copy] BMC Bioinformatics, Vol. 9 (05 June 2008), 265. by Ismael A. Vergara, Tomas Norambuena, Evandro Ferrada, Alex W. Slater, Francisco Melo posted by 5 people erexhepa guhjy niallhaslam zgcarvalho jfr
	Immunopanel of five biomarkers provides superior definition of basal-like breast cancer [My Copy] Nat Clin Prac Oncol, Vol. 5, No. 6. (June 2008), pp. 302-303. posted by 1 person erexhepa
	Quantification of diverse subcellular immunohistochemical markers with clinicobiological relevancies: validation of a new computer-assisted image analysis procedure [My Copy] Journal of Anatomy, Vol. 212, No. 6. (June 2008), pp. 868-878. by Lejeune, Marylene, Jaen, et al. Joaquin, Pons, Lluis, Lopez, Carlos, Salvado, Maria-Teresa, Bosch, Ramon, Garcia, Marcial, Escriva, Patricia, Baucells, Jordi, Cugat, Xavier, Alvaro, Tomas posted by 1 person erexhepa
	Quantitative immunohistochemistry by measuring cumulative signal strength using commercially available software photoshop and matlab. [My Copy] J Histochem Cytochem, Vol. 48, No. 2. (February 2000), pp. 303-312. by K. A. Matkowskyj, D. Schonfeld, R. V. Benya posted by 6 people erexhepa beapen Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics guhjy
	Identification of N-WASP homologs in human and rat brain [My Copy] Gene, Vol. 196, No. 1-2. (1 September 1997), pp. 43-48. by M. Fukuoka posted by 1 person fstrozzi
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted by 13 people n00c seninp darian maren megraw djkt fstrozzi jamselem justinhjohnson torfinnnome reyez natstreet druvus
	A novel erythroid-specific marker of transmissible spongiform encephalopathies [My Copy] Nature Medicine, Vol. 7, No. 3. (01 March 2001), pp. 361-364. by Gino Miele, Jean Manson, Michael Clinton posted by 1 person fstrozzi
	Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx) [My Copy] Science, Vol. 326, No. 5951. (16 October 2009), pp. 433-436. by Qingyou Xia, Yiran Guo, Ze Zhang, et al.Dong Li, Zhaoling Xuan, Zhuo Li, Fangyin Dai, Yingrui Li, Daojun Cheng, Ruiqiang Li, Tingcai Cheng, Tao Jiang, Celine Becquet, Xun Xu, Chun Liu, Xingfu Zha, Wei Fan, Ying Lin, Yihong Shen, Lan Jiang, Jeffrey Jensen, Ines Hellmann, Si Tang, Ping Zhao, Hanfu Xu, Chang Yu, Guojie Zhang, Jun Li, Jianjun Cao, Shiping Liu, Ningjia He, Yan Zhou, Hui Liu, Jing Zhao, Chen Ye, Zhouhe Du, Guoqing Pan, Aichun Zhao, Haojing Shao, Wei Zeng, Ping Wu, Chunfeng Li, Minhui Pan, Jingjing Li, Xuyang Yin, Dawei Li, Juan Wang, Huisong Zheng, Wen Wang, Xiuqing Zhang, Songgang Li, Huanming Yang, Cheng Lu, Rasmus Nielsen, Zeyang Zhou, Jian Wang, Zhonghuai Xiang, Jun Wang posted by 9 people venancio BergmanLab cisevol Journal picks dinnes fstrozzi operon natstreet biomcgary
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted by 23 people n00c davidmam klo operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose danmaclean Mycology stajich natstreet neils druvus GustavoLacerda Journal picks avilella
	Gammadelta T cells and the lymphoid stress-surveillance response. [My Copy] Immunity, Vol. 31, No. 2. (21 August 2009), pp. 184-196. by Adrian C. Hayday posted by 1 person fstrozzi
	Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection. [My Copy] PloS one, Vol. 4, No. 7. (27 July 2009), e6349. by Evgeny A. Glazov, Kritaya Kongsuwan, Wanchai Assavalapsakul, Paul F. Horwood, Neena Mitter, Timothy J. Mahony posted by 4 people fstrozzi microRNA heliopais samgj
	Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity [My Copy] Nucl. Acids Res., Vol. 37, No. 15. (1 August 2009), e104. by Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Therese Commes, Eric Rivals posted by 8 people manduca heliopais fstrozzi sotacam inesdesantiago jmcq guhjy xwbcn
	Perturbation of T-cell development by insertional mutation of a PrP transgene [My Copy] Immunology, Vol. 127, No. 2. (2009), pp. 226-236. by Mark Zabel, Christina Greenwood, Alana M. Thackray, Bruce Pulford, Willem Rens, Raymond Bujdoso posted by 1 person fstrozzi
	The development and function of regulatory T cells. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 16. (August 2009), pp. 2603-2622. by Creg J. Workman, Andrea L. Szymczak-Workman, Lauren W. Collison, Meenu R. Pillai, Dario A. Vignali posted by 1 person fstrozzi
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 44 people oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3264-3269. by Moran Yassour, Tommy Kaplan, Hunter B. Fraser, et al.Joshua Z. Levin, Jenna Pfiffner, Xian Adiconis, Gary Schroth, Shujun Luo, Irina Khrebtukova, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman, Aviv Regev posted by 10 people hzoltan fstrozzi GustavoLacerda stubrown jfr Mycology stajich GeeSharpMinor jmcq provero
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted by 14 people fernan fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu djkt semrich azazello mhamada
	Interleukin 7 signaling in dendritic cells regulates the homeostatic proliferation and niche size of CD4+ T cells. [My Copy] Nature immunology, Vol. 10, No. 2. (11 February 2009), pp. 149-157. by Martin Guimond, Rachelle G. Veenstra, David J. Grindler, et al.Hua Zhang, Yongzhi Cui, Ryan D. Murphy, Su Young Y. Kim, Risu Na, Lothar Hennighausen, Sema Kurtulus, Batu Erman, Polly Matzinger, Melinda S. Merchant, Crystal L. Mackall posted by 1 person fstrozzi
	α-Hemoglobin stabilizing protein is not a suitable marker for a screening test for variant Creutzfeldt-Jakob disease [My Copy] Transfusion, Vol. 48, No. 8. (August 2008), pp. 1616-1626. by Nigel E. J. Appleford, Kim Wilson, Fiona Houston, et al.Lesley J. Bruce, Alex Morrison, Matthew Bishop, Kevin Chalmers, Gino Miele, Edwin Massey, Chris Prowse, Jean Manson, Robert G. Will, Michael Clinton, Ian MacGregor, David J. Anstee posted by 1 person fstrozzi
	A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach [My Copy] Genome Research, Vol. 18, No. 6. (9 June 2008), pp. 957-964. by Evgeny A. Glazov, Pauline A. Cottee, Wesley C. Barris, Robert J. Moore, Brian P. Dalrymple, Mark L. Tizard posted by 3 people fstrozzi heliopais microRNA
	Comparative analysis of transcriptional profiling of CD3+, CD4+ and CD8+ T cells identifies novel immune response players in T-cell activation. [My Copy] BMC genomics, Vol. 9 (16 May 2008), 225. by Min Wang, Dirk Windgassen, Eleftherios T. Papoutsakis posted by 2 people fstrozzi tonia_schwartz
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted by 38 people hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin GeneGo psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 Koch_Lab
	Viewpoint<br />A "smart" cyberinfrastructure for research [My Copy] Commun. ACM, Vol. 52, No. 12. (2009), pp. 33-37. by Savas Parastatidis, Evelyne Viegas, Tony Hey posted by 3 people gthorisson druvus dullhunk
	Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation [My Copy] PLoS biology In PLoS Biol, Vol. 7, No. 11. (24 November 2009), e1000247. by Nicole L. Washington, Melissa A. Haendel, Christopher J. Mungall, Michael Ashburner, Monte Westerfield, Suzanna E. Lewis posted by 11 people mikel_egana jperkins pmidford cjm druvus Journal picks dullhunk Orengo Group Journal Picks CorinYeats gthorisson Zephyrus
	Article-Level Metrics and the Evolution of Scientific Impact [My Copy] PLoS Biol In PLoS Biol, Vol. 7, No. 11. (17 November 2009), e1000242. by Cameron Neylon, Shirley Wu posted by 43 people bdessailly freesci daforerog Yanno Schopfel vshahrez burak joergkurtwegner adriandefroment janderz8 richardmcgee suze biehl sci91078 rs renatomilani drmarkandersen gjuggler sfalsharif MariaChiaraP Parenting 2.0 hughesro gloriaoriggi Lbenmoha koczy gthorisson tnhh tharris Journal picks ppgardne Mycology stajich archimedian niallhaslam dartar fgibson dullhunk allysonlister kevinemamy neils jobadge AJCann CameronNeylon
	What is an analogue for the semantic web and why is having one important? [My Copy] In HT '07: Proceedings of the eighteenth conference on Hypertext and hypermedia (2007), pp. 123-132. by Schraefel posted by 1 person gthorisson
	Ethical implications of the use of whole genome methods in medical research [My Copy] European Journal of Human Genetics (04 November 2009) by Jane Kaye, Paula Boddington, Jantina de Vries, Naomi Hawkins, Karen Melham posted by 1 person gthorisson
	Collaborative Computing Using the Atom Publishing Protocol [My Copy] Information Technology: New Generations, 2008. ITNG 2008. Fifth International Conference on (18 April 2008), pp. 291-296. by F. Kart, L. E. Moser, P. M. Melliar-Smith posted by 1 person gthorisson
	Whose Name Is It, Anyway? Decentralized Identity Systems on the Web [My Copy] IEEE Internet Computing, Vol. 11, No. 4. (2007), pp. 72-76. by Daniel J. Weitzner posted by 1 person gthorisson
	Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 14. (2009), S6. by Vincent Smith, Simon Rycroft, Kehan Harman, Ben Scott, David Roberts posted by 9 people mchelen cgranell druvus lmichan Nezha gthorisson dullhunk operon dgovoni
	Self Protecting Data for De-perimeterised Information Sharing [My Copy] Digital Society, 2009. ICDS '09. Third International Conference on (13 February 2009), pp. 65-70. by P. Burnap, J. Hilton posted by 1 person gthorisson
	Sharing data [My Copy] Nature Cell Biology, Vol. 11, No. 11. (01 November 2009), pp. 1273-1273. posted by 6 people Kubke tnhh druvus dullhunk gthorisson reyez
	Accreditation and attribution in data sharing [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 984-985. by Gudmundur A. Thorisson posted by 8 people druvus stajich 8_01 lilith allysonlister dullhunk gthorisson neils
	Models for financial sustainability of biological databases and resources [My Copy] Database, Vol. 2009, No. 0. (23 October 2009), bap017. by Christina Chandras, Thomas Weaver, Michael Zouberakis, et al.Damian Smedley, Klaus Schughart, Nadia Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, Vassilis Aidinis posted by 6 people gthorisson dullhunk mtaschuk druvus BergmanLab cisevol
	The philosophy of scientific experimentation: a review [My Copy] Automated Experimentation, Vol. 1, No. 1. (2009), 2. by Hans Radder posted by 2 people gthorisson dullhunk
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature In Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted by 23 people n00c Zephyrus gthorisson vplagnol biovils psique chvlyl daed daforerog zufar jessopher DrRichardBadge operon colinveal frohike sf11 sameersoi polivares dswan Journal picks qayub bpcusack rdiaz
	In Google We Trust? [My Copy] Journal of Electronic Publishing, Vol. 9, No. 1. (31 January 2006) by Geoffrey Bilder posted by 4 people gthorisson Kubke CameronNeylon dullhunk
	Strategic reading, ontologies, and the future of scientific publishing. [My Copy] Science (New York, N.Y.) In Science, Vol. 325, No. 5942. (14 August 2009), pp. 828-832. by Allen H. Renear, Carole L. Palmer posted by 62 people danilov provero gthorisson 8_01 lilith nancylongnecker BergmanLab cisevol aaltenburger radagabriel antonkratz Semantic networks in translation guhjy Orengo Group Journal Picks robertrentzsch artaban421 malkav30 conne262 clarabermudez jclau pick600 CulCog yuifu daforerog smuekusc robertlischke nperoni drevicko eisdur Ubicomp STS Convention on Knowledge Commons Integrative Expertise for Global Health jago dayjm sebpaquet tnhh rickl Tomste fheintz reyez biologyeditors fgibson lmichan moernerlab samjlord rdiaz polivares Journal picks jandot dullhunk deanmalmgren druvus modza emptyhb plosmedicine renatomilani Zephyrus applebyb newtekken rschulz PaperCollector
	The need for genetic variant naming standards in published abstracts of human genetic association studies [My Copy] BMC Research Notes, Vol. 2, No. 1. (2009), 56. by Wei Yu, Renee Ned, Anja Wulf, Tiebin Liu, Muin Khoury, Marta Gwinn posted by 4 people gthorisson daforerog guhjy pkonings
	Empiricism Is Not a Matter of Faith [My Copy] Computational Linguistics, Vol. 34, No. 3. (1 September 2008), pp. 465-470. by Ted Pedersen posted by 6 people dullhunk brembs operon allysonlister gthorisson briordan
	WormBase: a cross-species database for comparative genomics [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 133-137. by Todd W. Harris, Raymond Lee, Erich Schwarz, et al.Keith Bradnam, Daniel Lawson, Wen Chen, Darin Blasier, Eimear Kenny, Fiona Cunningham, Ranjana Kishore, Juancarlos Chan, Hans-Michael Muller, Andrei Petcherski, Gudmundur Thorisson, Allen Day, Tamberlyn Bieri, Anthony Rogers, Chao-Kung Chen, John Spieth, Paul Sternberg, Richard Durbin, Lincoln D. Stein posted by 4 people gthorisson thegoose2 C. elegans / WormBase tharris
	Guest Editorial: Semantic mashup of biomedical data [My Copy] Journal of Biomedical Informatics, Vol. In Press, Uncorrected Proof by Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens posted by 9 people gthorisson druvus simonmcbride nicklynch junhanz guhjy hpiwowar fgibson dullhunk
	The Semantic Web Revisited [My Copy] IEEE Intelligent Systems In Intelligent Systems, IEEE, Vol. 21, No. 3. (May 2006), pp. 96-101. by Nigel Shadbolt, Tim B. Lee, Wendy Hall posted by 12 people gthorisson nlong lendle CameronNeylon fiacobelli eddymier mthomure kajakbent searchy grosso SNE mccasalini
	Life Sciences and the web: a new era for collaboration [My Copy] Molecular Systems Biology In Mol Syst Biol, Vol. 4 (01 July 2008) by Jonathan A. Sagotsky, Le Zhang, Zhihui Wang, Sean Martin, Thomas S. Deisboeck posted by 24 people gthorisson radagabriel lyss lmichan artaban421 daforerog rolawren guhjy thegoose2 Science 2.0 / Open Science pfanderson pick600 Keywan fgibson malkocb pengchy druvus tharris CameronNeylon reyez neils dullhunk renatomilani hpiwowar
	BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R130. by Chunlei Wu, Camilo Orozco, Jason Boyer, et al.Marc Leglise, James Goodale, Serge Batalov, Christopher Hodge, James Haase, Jeff Janes, Jon Huss, Andrew Su posted by 8 people fstrozzi Bioinformatics Core Service jforment druvus thomaskelder natstreet daforerog neils
	Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 39. by Hossein Zare, Dipen Sangurdekar, Poonam Srivastava, Mostafa Kaveh, Arkady Khodursky posted by 4 people enelkinsan TRHvidsten barriot trfield
	The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes. [My Copy] Genome biology, Vol. 10, No. 4. (15 April 2009), R36. by John W. Whitaker, Glenn A. McConkey, David R. Westhead posted by 8 people barriot johnwhitaker michaelbarton Microbial-Ecology Thaverkamp cmzmasek neils biomcgary
	Data mining of enzymes using specific peptides [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 446. by Uri Weingart, Yair Lavi, David Horn posted by 1 person kshameer
	LipocalinPred: a SVM-based method for prediction of lipocalins [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 445. by Jayashree Ramana, Dinesh Gupta posted by 1 person kshameer