Jonathan Jacobs's Top Recommendations

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	A General Definition and Nomenclature for Alternative Splicing Events [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000147. by Michael Sammeth, Sylvain Foissac, Roderic Guigó posted by 10 people malcook treangen madreach BenosLab sabahkadri Ema bootsy jm12 brianb wutongbin
	Complex SELEX against target mixture: Stochastic computer model, simulation, and analysis [My Copy] Computer Methods and Programs in Biomedicine, Vol. 87, No. 3. (September 2007), pp. 189-200. by C. Chen posted by 3 people jec105 malcook erdos
	Architecture and secondary structure of an entire HIV-1 RNA genome. [My Copy] Nature, Vol. 460, No. 7256. (6 August 2009), pp. 711-716. by Joseph M. Watts, Kristen K. Dang, Robert J. Gorelick, et al.Christopher W. Leonard, Julian W. Bess, Ronald Swanstrom, Christina L. Burch, Kevin M. Weeks posted by 10 people samgj jago physics operon Oxford Virology wsjames Journal picks memerman djkt jbhiatt
	RNA biophysics has come of age [My Copy] Biopolymers, Vol. 91, No. 10. (2009), pp. 811-814. by Olke C. Uhlenbeck posted by 2 people physics carlosjavierna
	Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (23 July 2009) by Gang Chen, Kung-Yao Y. Chang, Ming-Yuan Y. Chou, Carlos Bustamante, Ignacio Tinoco posted by 2 people physics alexknight
	Predicting structures and stabilities for H-type pseudoknots with interhelix loops [My Copy] RNA, Vol. 15, No. 4. (April 2009), pp. 696-706. by Song Cao, Shi-Jie Chen posted by 1 person physics
	A Probabilistic Model of RNA Conformational Space [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (19 June 2009), e1000406. by Jes Frellsen, Ida Moltke, Martin Thiim, Kanti V. Mardia, Jesper Ferkinghoff-Borg, Thomas Hamelryck posted by 6 people physics phoenixzxl kshameer Journal picks ppgardne Diego_Prada
	A New Computational Approach for Mechanical Folding Kinetics of RNA Hairpins [My Copy] Biophysical Journal, Vol. 96, No. 10. (20 May 2009), pp. 4024-4034. by Song Cao, Shi-Jie Chen posted by 2 people physics ellarond
	Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 6. (1 June 2008), pp. 1164-1173. by Feng Ding, Shantanu Sharma, Poornima Chalasani, Vadim V. Demidov, Natalia E. Broude, Nikolay V. Dokholyan posted by 4 people balewis carmaus Hosna physics
	Novel and efficient RNA secondary structure prediction using hierarchical folding. [My Copy] J Comput Biol, Vol. 15, No. 2. (March 2008), pp. 139-163. by H. Jabbari, A. Condon, S. Zhao posted by 3 people physics eskay Hosna
	KnotSeeker: Heuristic pseudoknot detection in long RNA sequences [My Copy] RNA, Vol. 14, No. 4. (1 April 2008), pp. 630-640. by Jana Sperschneider, Amitava Datta posted by 3 people condon Hosna physics
	Predicting ribosomal frameshifting efficiency [My Copy] Phys. Biol., Vol. 5, No. 1. (March 2008), 016002. by Song Cao, Shi-Jie Chen posted by 1 person physics
	The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data [My Copy] Nature, Vol. 452, No. 7183. (06 March 2008), pp. 51-55. by Marc Parisien, Francois Major posted by 8 people heliopais physics bmduggan puranjoy_b zwang austin elfar reyez
	Evolution of small nuclear RNAs in S. cerevisiae, C. albicans, and other hemiascomycetous yeasts [My Copy] RNA, Vol. 13, No. 12. (1 December 2007), pp. 2066-2080. by Quinn M. Mitrovich, Christine Guthrie posted by 1 person physics
	Prediction of Mammalian MicroRNA Targets [My Copy] Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798. by Benjamin P. Lewis, I-hung Shih, Matthew W. Jones-Rhoades, David P. Bartel, Christopher B. Burge posted by 5 people stharward alessandroparini microRNA heliopais maralena
	The role of site accessibility in microRNA target recognition [My Copy] Nature Genetics, Vol. 39, No. 10. (23 September 2007), pp. 1278-1284. by Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal posted by 19 people frohike daforerog alessandroparini jfr mtagaya rdiaz Hosna djkt Garamonfok physics bootsy epigenetics lp2 cabbagezs microRNA heliopais uwe yavanna maralena
	Prediction of Plant MicroRNA Targets [My Copy] Cell, Vol. 110, No. 4. (23 August 2002), pp. 513-520. by Matthew W. Rhoades, Brenda J. Reinhart, Lee P. Lim, Christopher B. Burge, Bonnie Bartel, David P. Bartel posted by 3 people stharward GustavoLacerda natstreet
	Automated de novo prediction of native-like RNA tertiary structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 37. (11 September 2007), pp. 14664-14669. by Rhiju Das, David Baker posted by 11 people fisherp rsaito jwm marcius eckart_bindewald zwang physics BioinfoCIPF SGU-CIPF Ema reyez
	Predicting helical coaxial stacking in RNA multibranch loops [My Copy] RNA, Vol. 13, No. 7. (1 July 2007), pp. 939-951. by Rahul Tyagi, David H. Mathews posted by 3 people ellarond physics biologistyao
	Bridging the gap in RNA structure prediction. [My Copy] Current opinion in structural biology, Vol. 17, No. 2. (April 2007), pp. 157-165. by B. A. Shapiro, Y. G. Yingling, W. Kasprzak, E. Bindewald posted by 5 people rb_india puranjoy_b gpalidwor debatebob physics
	Rearrangement of competing U2 RNA helices within the spliceosome promotes multiple steps in splicing. [My Copy] Genes Dev, Vol. 21, No. 7. (1 April 2007), pp. 811-820. by R. J. Perriman, M. Ares posted by 2 people physics DaisyMayhem
	U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicing. [My Copy] Genes Dev, Vol. 21, No. 7. (1 April 2007), pp. 821-834. by A. K. Hilliker, M. A. Mefford, J. P. Staley posted by 1 person physics
	U2-U6 RNA folding reveals a group II intron-like domain and a four-helix junction. [My Copy] Nat Struct Mol Biol, Vol. 11, No. 12. (December 2004), pp. 1237-1242. by D. G. Sashital, G. Cornilescu, C. J. McManus, D. A. Brow, S. E. Butcher posted by 1 person physics
	Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human. [My Copy] RNA, Vol. 13, No. 3. (March 2007), pp. 328-338. by D. G. Sashital, V. Venditti, C. G. Angers, G. Cornilescu, S. E. Butcher posted by 1 person physics
	A three-state mechanism for DNA hairpin folding characterized by multiparameter fluorescence fluctuation spectroscopy. [My Copy] J Am Chem Soc, Vol. 128, No. 4. (1 February 2006), pp. 1240-1249. by J. Jung, A. Van Orden posted by 1 person physics
	Predicting RNA folding thermodynamics with a reduced chain representation model. [My Copy] RNA, Vol. 11, No. 12. (December 2005), pp. 1884-1897. by S. Cao, S. J. Chen posted by 3 people ellarond mtagaya physics
	Biphasic folding kinetics of RNA pseudoknots and telomerase RNA activity. [My Copy] J Mol Biol, Vol. 367, No. 3. (30 March 2007), pp. 909-924. by S. Cao, S. J. Chen posted by 1 person physics
	Free energy landscapes of RNA/RNA complexes: with applications to snRNA complexes in spliceosomes. [My Copy] J Mol Biol, Vol. 357, No. 1. (17 March 2006), pp. 292-312. by S. Cao, S. J. Chen posted by 2 people mtagaya physics
	Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting [My Copy] PNAS, Vol. 104, No. 14. (3 April 2007), pp. 5830-5835. by Thomas M. Hansen, Reihani, Lene B. Oddershede, Michael A. Sorensen posted by 3 people lshaw jwagoner physics
	Potent effect of target structure on microRNA function. [My Copy] Nat Struct Mol Biol (1 April 2007) by Dang Long, Rosalind Lee, Peter Williams, Chi Yu Y. Chan, Victor Ambros, Ye Ding posted by 12 people thegoose2 C. elegans / WormBase tharris tardigrade andersbj cdawson Garamonfok physics lp2 cabbagezs microRNA GIG
	High sensitivity RNA pseudoknot prediction [My Copy] Nucleic Acids Research, Vol. 35, No. 2. (January 2007), pp. 656-663. by Huang, Xiaolu, Ali, Hesham posted by 1 person physics
	Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. [My Copy] Mol Cell, Vol. 17, No. 5. (4 March 2005), pp. 671-682. by C. A. Theimer, C. A. Blois, J. Feigon posted by 3 people Hosna bpagano physics
	Secondary Structure Prediction of Interacting RNA Molecules [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001. by Mirela Andronescu, Zhi C. Zhang, Anne Condon posted by 8 people rb_india marcius eckart_bindewald Hosna cthachuk physics BioinfoCIPF SGU-CIPF
	Predicting RNA pseudoknot folding thermodynamics [My Copy] Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. 2634-2652. by Cao, Song, Chen, Shi-Jie posted by 7 people gzm55 condon Hosna apop physics Kiarostami beta
	Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting. [My Copy] J Mol Biol, Vol. 298, No. 2. (28 April 2000), pp. 167-185. by D. P. Giedroc, C. A. Theimer, P. L. Nixon posted by 5 people nikkiwithers condon Hosna physics beta
	Revolutions in RNA Secondary Structure Prediction [My Copy] Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532. by David H. Mathews posted by 14 people bmduggan heliopais marcius arcticrasta penka Eonwe cthachuk emidio_capriotti physics BioinfoCIPF SGU-CIPF maralena winterschlaefer austin
	microRNA target predictions in animals [My Copy] Nature Genetics, Vol. 38 Suppl 1, No. 6s. (30 May 2006), pp. S8-S13. by Nikolaus Rajewsky posted by 18 people danaiancu thegoose Bioinformatics - CRUK Stew jfr marcius balicea andersbj mtagaya chenlc03 Garamonfok physics Bioinformatics microRNA BioinfoCIPF SGU-CIPF heliopais maralena
	Tertiary Motifs in RNA Structure and Folding. [My Copy] Angew Chem Int Ed Engl, Vol. 38, No. 16. (August 1999), pp. 2326-2343. by R. T. Batey, R. P. Rambo, J. A. Doudna posted by 7 people marcius condon jarasch physics beta BioinfoCIPF SGU-CIPF
	A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting [My Copy] Nature, Vol. 441, No. 7090., pp. 244-247. by Olivier Namy, Stephen J. Moran, David I. Stuart, Robert J. C. Gilbert, Ian Brierley posted by 1 person physics
	Kinetics of an RNA conformational switch. [My Copy] Proc Natl Acad Sci U S A, Vol. 91, No. 8. (12 April 1994), pp. 3373-3377. by K. A. LeCuyer, D. M. Crothers posted by 2 people arcticrasta physics
	Statistical and Bayesian approaches to RNA secondary structure prediction. [My Copy] RNA (New York, N.Y.), Vol. 12, No. 3. (March 2006), pp. 323-331. by Y. Ding posted by 12 people rb_india toerst marcius arcticrasta penka condon Hosna physics Kiarostami beta BioinfoCIPF SGU-CIPF
	Beyond Mfold: recent advances in RNA bioinformatics. [My Copy] Journal of biotechnology, Vol. 124, No. 1. (25 June 2006), pp. 41-55. by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich posted by 25 people tonamswish heliopais daforerog danaiancu rb_india ellarond GustavoLacerda hrogers marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe cthachuk stajich physics microRNA beta BioinfoCIPF SGU-CIPF reyez
	How RNA folds. [My Copy] J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281. by I. Tinoco, C. Bustamante posted by 14 people rb_india eskay dayjm marcius eckart_bindewald perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
	Thermodynamics of RNA-RNA Binding. [My Copy] Bioinformatics (29 January 2006) by Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H H. Bernhart, Peter F F. Stadler, Ivo L L. Hofacker posted by 11 people rb_india marcius eckart_bindewald andersbj arcticrasta ilh mtw physics microRNA BioinfoCIPF SGU-CIPF
	Identification of Drosophila MicroRNA targets. [My Copy] PLoS Biol, Vol. 1, No. 3. (December 2003) by A. Stark, J. Brennecke, R. B. Russell, S. M. Cohen posted by 5 people eckart_bindewald lp2 Bioinformatics microRNA heliopais
	MicroRNA targets in Drosophila. [My Copy] Genome Biol, Vol. 5, No. 1. (2003) by A. J. Enright, B. John, U. Gaul, T. Tuschl, C. Sander, D. S. Marks posted by 10 people wrowell alessandroparini capitall heliopais eckart_bindewald mortenlindow dsm Garamonfok microRNA maralena
	Incorporating structure to predict microRNA targets. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 11. (15 March 2005), pp. 4006-4009. by H. Robins, Y. Li, R. W. Padgett posted by 7 people physics sennoma jfr microRNA heliopais zibdum maralena
	Torsional restraint: a new twist on frameshifting pseudoknots [My Copy] Nucleic Acids Research, Vol. 33, No. 6. (2005), pp. 1825-1833. by Ewan P. Plant, Jonathan D. Dinman posted by 1 person physics
	A dynamic programming algorithm for RNA structure prediction including pseudoknots1☆ [My Copy] Journal of Molecular Biology, Vol. 285, No. 5. (05 February 1999), pp. 2053-2068. by Elena Rivas, Sean R. Eddy posted by 15 people rb_india NicholasErho gzm55 mjoach evaf balajis eckart_bindewald arcticrasta dquest condon Hosna jarasch physics beta guxiyou
	Detection and evaluation of intron retention events in the human transcriptome. [My Copy] RNA (New York, N.Y.), Vol. 10, No. 5. (May 2004), pp. 757-765. by P. A. Galante, N. J. Sakabe, N. Kirschbaum-Slager, S. J. de Souza
	Accurate prediction of NAGNAG alternative splicing [My Copy] Nucl. Acids Res. (9 April 2009), gkp220. by Rileen Sinha, Swetlana Nikolajewa, Karol Szafranski, et al.Michael Hiller, Niels Jahn, Klaus Huse, Matthias Platzer, Rolf Backofen
	A bipartite U1 site represses U1A expression by synergizing with PIE to inhibit nuclear polyadenylation. [My Copy] RNA (New York, N.Y.), Vol. 13, No. 12. (December 2007), pp. 2129-2140. by F. Guan, R. M. Caratozzolo, R. Goraczniak, E. S. Ho, S. I. Gunderson
	Non-snRNP U1A levels decrease during mammalian B-cell differentiation and release the IgM secretory poly(A) site from repression. [My Copy] RNA (New York, N.Y.), Vol. 12, No. 1. (January 2006), pp. 122-132. by J. Ma, S. I. Gunderson, C. Phillips
	The snRNP-associated U1A levels change following IL-6 stimulation of human B-cells. [My Copy] Molecular immunology, Vol. 39, No. 13. (March 2003), pp. 809-814. by C. Milcarek, K. Martincic, L. H. Chung-Ganster, C. S. Lutz
	Identification of new poly(A) polymerase-inhibitory proteins capable of regulating pre-mRNA polyadenylation. [My Copy] Journal of molecular biology, Vol. 318, No. 5. (17 May 2002), pp. 1189-1206. by B. Ko, S. I. Gunderson
	Poly(A) tail synthesis and regulation: recent structural insights [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 82-88. by T. Hall
	Regulation of nuclear poly(A) addition controls the expression of immunoglobulin M secretory mRNA. [My Copy] The EMBO journal, Vol. 20, No. 22. (15 November 2001), pp. 6443-6452. by C. Phillips, S. Jung, S. I. Gunderson
	The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein [My Copy] Nat Struct Mol Biol, Vol. 7, No. 4. (April 2000), pp. 329-335. by Luca Varani, Samuel I. Gunderson, Iain W. Mattaj, Lewis E. Kay, David Neuhaus, Gabriele Varani
	Position-dependent inhibition of the cleavage step of pre-mRNA 3'-end processing by U1 snRNP. [My Copy] RNA (New York, N.Y.), Vol. 6, No. 2. (February 2000), pp. 178-188. by S. Vagner, U. Rüegsegger, S. I. Gunderson, W. Keller, I. W. Mattaj
	The snRNP-free U1A (SF-A) complex(es): identification of the largest subunit as PSF, the polypyrimidine-tract binding protein-associated splicing factor. [My Copy] RNA (New York, N.Y.), Vol. 4, No. 12. (December 1998), pp. 1493-1499. by C. S. Lutz, C. Cooke, J. P. O'Connor, R. Kobayashi, J. C. Alwine
	Interaction between the U1 snRNP-A protein and the 160-kD subunit of cleavage-polyadenylation specificity factor increases polyadenylation efficiency in vitro. [My Copy] Genes & development, Vol. 10, No. 3. (1 February 1996), pp. 325-337. by C. S. Lutz, K. G. Murthy, N. Schek, J. P. O'Connor, J. L. Manley, J. C. Alwine
	The human U1A snRNP protein regulates polyadenylation via a direct interaction with poly(A) polymerase [My Copy] Cell, Vol. 76, No. 3. (11 February 1994), pp. 531-541. by S. Gunderson
	The human U1 snRNP-Specific U1A protein inhibits polyadenylation of its own pre-mRNA [My Copy] Cell, Vol. 72, No. 6. (March 1993), pp. 881-892. by W. Boelens
	Interaction of N-terminal domain of U1A protein with an RNA stem/loop. [My Copy] Nucleic acids research, Vol. 20, No. 16. (25 August 1992), pp. 4283-4290. by K. B. Hall, W. T. Stump
	An intronic element contributes to splicing repression in spinal muscular atrophy. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 9. (27 February 2007), pp. 3426-3431. by T. Kashima, N. Rao, J. L. Manley
	The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences. [My Copy] Human genetics, Vol. 90, No. 1-2. (t 1992), pp. 41-54. by M. Krawczak, J. Reiss, D. N. Cooper
	Sorting out the complexity of SR protein functions. [My Copy] RNA (New York, N.Y.), Vol. 6, No. 9. (September 2000), pp. 1197-1211. by B. R. Graveley
	A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (2008), pp. 11218-11223. by Peter Stoilov, Chia-Ho Lin, Robert Damoiseaux, Julia Nikolic, Douglas L. Black posted by 2 people wutongbin daforerog
	Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (25 January 2008), e21. by Dirk Holste, Uwe Ohler posted by 6 people cabbagezs natstreet druvus giovenko xili03 Ema
	Human branch point consensus sequence is yUnAy. [My Copy] Nucleic acids research, Vol. 36, No. 7. (April 2008), pp. 2257-2267. by K. Gao, A. Masuda, T. Matsuura, K. Ohno posted by 2 people raistrick myourshaw
	Multiple and Specific mRNA Processing Targets for the Major Human hnRNP Proteins [My Copy] Mol. Cell. Biol., Vol. 28, No. 19. (1 October 2008), pp. 6033-6043. by Julian P. Venables, Chu-Shin Koh, Ulrike Froehlich, et al.Elvy Lapointe, Sonia Couture, Lyna Inkel, Anne Bramard, Eric R. Paquet, Valerie Watier, Mathieu Durand, Jean-Francois Lucier, Julien Gervais-Bird, Karine Tremblay, Panagiotis Prinos, Roscoe Klinck, Sherif A. Elela, Benoit Chabot posted by 1 person cajunsushi
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted by 31 people hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick BenosLab gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin Khavkin's lab zwang
	"Nought May Endure but Mutability": Spliceosome Dynamics and the Regulation of Splicing [My Copy] Molecular Cell, Vol. 30, No. 6. (20 June 2008), pp. 657-666. by Duncan J. Smith, Charles C. Query, Maria M. Konarska posted by 2 people diaz0058 raistrick
	Spatial mapping of splicing factor complexes involved in exon and intron definition [My Copy] J. Cell Biol., Vol. 181, No. 6. (16 June 2008), pp. 921-934. by Jonathan D. Ellis, David Lleres, Marco Denegri, Angus I. Lamond, Javier F. Caceres posted by 1 person inesdesantiago
	Structural Basis for Polypyrimidine Tract Recognition by the Essential Pre-mRNA Splicing Factor U2AF65 [My Copy] Molecular Cell, Vol. 23, No. 1. (7 July 2006), pp. 49-59. by Allen E. Sickmier, Katherine E. Frato, Haihong Shen, Shanthi R. Paranawithana, Michael R. Green, Clara L. Kielkopf
	A Novel Peptide Recognition Mode Revealed by the X-Ray Structure of a Core U2AF35/U2AF65 Heterodimer [My Copy] Cell, Vol. 106, No. 5. (7 September 2001), pp. 595-605. by Clara L. Kielkopf, Natalia A. Rodionova, Michael R. Green, Stephen K. Burley posted by 1 person clearbluespring
	Functional recognition of the 3[prime] splice site AG by the splicing factor U2AF35 [My Copy] Nature, Vol. 402, No. 6763. (16 December 1999), pp. 832-835. by Shaoping Wu, Charles M. Romfo, Timothy W. Nilsen, Michael R. Green
	Splicing double: insights from the second spliceosome [My Copy] Nat Rev Mol Cell Biol, Vol. 4, No. 12. (December 2003), pp. 960-970. by Abhijit A. Patel, Joan A. Steitz
	A novel U2-U6 snRNA structure is necessary for mammalian mRNA splicing. [My Copy] Genes Dev., Vol. 9, No. 7. (1 April 1995), pp. 843-854. by J. S. Sun, J. L. Manley
	Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. [My Copy] The EMBO journal, Vol. 17, No. 19. (1 October 1998), pp. 5783-5795. by Y. T. Yu, M. D. Shu, J. A. Steitz
	Messenger RNA splicing in yeast: clues to why the spliceosome is a ribonucleoprotein [My Copy] Science, Vol. 253, No. 5016. (12 July 1991), pp. 157-163. by C. Guthrie
	Combined biochemical and electron microscopic analyses reveal the architecture of the mammalian U2 snRNP. [My Copy] The Journal of cell biology, Vol. 145, No. 7. (28 June 1999), pp. 1355-1368. by A. Krämer, P. Grüter, K. Gröning, B. Kastner
	The U5 and U6 small nuclear RNAs as active site components of the spliceosome [My Copy] Science, Vol. 262, No. 5142. (24 December 1993), pp. 1989-1996. by E. J. Sontheimer, J. A. Steitz
	The U1 snRNP protein U1C recognizes the 5[prime] splice site in the absence of base pairing [My Copy] Nature, Vol. 419, No. 6902. (2002), pp. 86-90. by Hansen Du, Michael Rosbash
	Defining a 5' splice site by functional selection in the presence and absence of U1 snRNA 5' end. [My Copy] RNA (New York, N.Y.), Vol. 8, No. 2. (February 2002), pp. 166-179. by M. Lund, J. Kjems
	The U1 snRNP Base Pairs with the 5' Splice Site within a Penta-snRNP Complex [My Copy] Mol. Cell. Biol., Vol. 23, No. 10. (15 May 2003), pp. 3442-3455. by Hadar Malca, Noam Shomron, Gil Ast
	Dynamic RNA-RNA Interactions in the Spliceosome [My Copy] Annual Review of Genetics, Vol. 28, No. 1. (1994), pp. 1-26. by H. D. Madhani, C. Guthrie
	Protein functions in pre-mRNA splicing [My Copy] Current Opinion in Cell Biology, Vol. 9, No. 3. (June 1997), pp. 320-328. by Cindy L. Will, Reinhard Lührmann
	CLIP Identifies Nova-Regulated RNA Networks in the Brain [My Copy] Science, Vol. 302, No. 5648. (14 November 2003), pp. 1212-1215. by Jernej Ule, Kirk B. Jensen, Matteo Ruggiu, Aldo Mele, Aljaz Ule, Robert B. Darnell posted by 2 people cassj kieran101
	Detection and measurement of alternative splicing using splicing-sensitive microarrays [My Copy] Methods In Post-transcriptional Regulation of Gene Expression, Vol. 37, No. 4. (December 2005), pp. 345-359. by Karpagam Srinivasan, Lily Shiue, Justin D. Hayes, et al.Ross Centers, Sean Fitzwater, Rebecca Loewen, Lillian R. Edmondson, Jessica Bryant, Michael Smith, Claire Rommelfanger, Valerie Welch, Tyson A. Clark, Charles W. Sugnet, Kenneth J. Howe, Yael Mandel-Gutfreund, Jr Ares
	Identification of alternative splicing regulators by RNA interference in Drosophila. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 45. (9 November 2004), pp. 15974-15979. by J. W. Park, K. Parisky, A. M. Celotto, R. A. Reenan, B. R. Graveley
	Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. [My Copy] Molecular and cellular biology, Vol. 20, No. 20. (October 2000), pp. 7463-7479. by V. Markovtsov, J. M. Nikolic, J. A. Goldman, C. W. Turck, M. Y. Chou, D. L. Black
	A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG. [My Copy] The EMBO journal, Vol. 22, No. 4. (17 February 2003), pp. 905-912. by Y. Jin, H. Suzuki, S. Maegawa, et al.H. Endo, S. Sugano, K. Hashimoto, K. Yasuda, K. Inoue
	The RNA-Binding Protein TIA-1 Is a Novel Mammalian Splicing Regulator Acting through Intron Sequences Adjacent to a 5' Splice Site [My Copy] Mol. Cell. Biol., Vol. 20, No. 17. (1 September 2000), pp. 6287-6299. by Fabienne Del Gatto-Konczak, Cyril F. Bourgeois, Caroline Le Guiner, et al.Liliane Kister, Marie-Claude Gesnel, James Stevenin, Richard Breathnach
	Nova-1 Regulates Neuron-Specific Alternative Splicing and Is Essential for Neuronal Viability [My Copy] Neuron, Vol. 25, No. 2. (February 2000), pp. 359-371. by Kirk B. Jensen, Kate B. Dredge, Giovanni Stefani, et al.Ru Zhong, Ronald J. Buckanovich, Hirotaka J. Okano, Yolanda Y. Yang, Robert B. Darnell
	Splicing of a Critical Exon of Human Survival Motor Neuron Is Regulated by a Unique Silencer Element Located in the Last Intron [My Copy] Mol. Cell. Biol., Vol. 26, No. 4. (15 February 2006), pp. 1333-1346. by Nirmal K. Singh, Natalia N. Singh, Elliot J. Androphy, Ravindra N. Singh
	Characterization of the Intronic Splicing Silencers Flanking FGFR2 Exon IIIb [My Copy] J. Biol. Chem., Vol. 280, No. 14. (8 April 2005), pp. 14017-14027. by Eric J. Wagner, Andrew P. Baraniak, October M. Sessions, David Mauger, Eric Moskowitz, Mariano A. Garcia-Blanco
	Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression [My Copy] Journal of Biomedical Science, Vol. 11, No. 3. (27 May 2004), pp. 278-294. by Zhi-Ming Zheng
	G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection. [My Copy] Molecular and cellular biology, Vol. 17, No. 8. (August 1997), pp. 4562-4571. by A. J. McCullough, S. M. Berget
	Selection of novel exon recognition elements from a pool of random sequences. [My Copy] Molecular and cellular biology, Vol. 15, No. 11. (November 1995), pp. 6291-6298. by H. Tian, R. Kole