jteyra's Top Recommendations

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	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 50 people krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	Ten thousand interactions for the molecular biologist [My Copy] Nature Biotechnology, Vol. 22, No. 10. (06 October 2004), pp. 1317-1321. by Patrick Aloy, Robert B. Russell posted by 17 people krapnik ucbcjbm flbarroso mikaellund baaden jwm bicko chad_davis dullhunk dgront drastic ruvido Radiation_Damage Stressosome Evangelia higueruelo timg
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted by 16 people dfdong timg mgomes barry bjorns wiehe julianm bicko chad_davis cjeans structural_bioinformatics ZLAB Bioinformatics Evangelia marti higueruelo
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 26 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted by 15 people winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF Evangelia kintoki
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted by 21 people victorclaessen saravan Diego_Prada xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm baker-group wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Interrogating protein interaction networks through structural biology. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by P. Aloy, R. B. Russell posted by 17 people kgutwin tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale structural_bioinformatics kdl Bioinformatics Evangelia
	GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 3. (1 March 2008), pp. 435-447. by Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl posted by 25 people softsimu parnell rabio oteri krapnik robertvacha rodrigofaccioli pavanghatty janneb ZhangYinhe okapi flbarroso marceavi Structural Biology Group TorVergata A_Coletta_Thesis choonpeng Lombardo_7 jwm daevans mmuecke sobolevnrm baker-group r2s2 middledomain loison
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted by 10 people bicko chad_davis choonpeng grahamc cjeans zwang niallhaslam biehl marti carlk
	Protein complexes: structure prediction challenges for the 21st century. [My Copy] Current opinion in structural biology, Vol. 15, No. 1. (February 2005), pp. 15-22. by P. Aloy, M. Pichaud, R. B. Russell posted by 8 people flbarroso karbak aalibes baaden bicko chad_davis marti higueruelo
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted by 25 people ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF nigham sim82
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted by 26 people ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes structural_bioinformatics kdl cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket
	Determining the architectures of macromolecular assemblies [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 683-694. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T. Chait, Michael P. Rout, Andrej Sali posted by 10 people mijam bicko chad_davis neils cjeans zwang CameronNeylon faion phoenixzxl higueruelo
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 33 people barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Petras J. Kundrotas, Emil Alexov posted by 4 people carlk higueruelo bicko chad_davis
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted by 36 people aceol mpotamias Paccanaro Lab paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq kdl EBI-regulation BioinfoCIPF SGU-CIPF Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted by 17 people bmduggan pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 sebk granujilla
	D<FONT SIZE='-2'>OCKGROUND</FONT> system of databases for protein recognition studies: Unbound structures for docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Ying Gao, Dominique Douguet, Andrey Tovchigrechko, Ilya A. Vakser posted by 6 people flbarroso marti bicko chad_davis RamuAnandakrishnan timg
	Flexible protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 194-200. by Alexandre M. J. J. Bonvin posted by 15 people timg flbarroso oteri laurabailey dgruiz aqeel bicko yongzhao ima sangeetha gloria Bioinformatics TSRI_MGL insilicodrug higueruelo
	A comprehensive analysis of protein\|[ndash]\|protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted by 21 people mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry kdl hplatero csanford carlk
	ProtBuD: a database of biological unit structures of protein families and superfamilies [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2876-2882. by Qifang Xu, Adrian Canutescu, Zoran Obradovic, Roland L. Dunbrack posted by 3 people higueruelo bicko chad_davis
	SCOP: a structural classification of proteins database for the investigation of sequences and structures. [My Copy] Journal of molecular biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted by 15 people timhubbard flbarroso yuslinaz semin pjcite dimka chrn chad_davis j3xucite sriram_s aengisch massivemayhem cjeans siebertm sim82
	GROMACS: fast, flexible, and free. [My Copy] Journal of computational chemistry, Vol. 26, No. 16. (December 2005), pp. 1701-1718. by David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. Berendsen posted by 23 people arifor krapnik r2s2 janneb dsmueller oteri choonpeng sebk dimka jwm ttjoseph bilab rabio Dinler Radiation_Damage Stressosome tji softsimu ashaytan robertvacha sunnytov Diego_Prada A_Coletta_Thesis
	Docking and scoring protein complexes: CAPRI 3rd Edition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Marc F. Lensink, Raúl Méndez, Shoshana J. Wodak posted by 11 people mgomes flbarroso structural_bioinformatics csrocha bicko ruvido cjeans carlescorbi yalexeev middledomain timg
	Diversity of protein-protein interactions. [My Copy] EMBO J, Vol. 22, No. 14. (15 July 2003), pp. 3486-3492. by I. M. Nooren, J. M. Thornton posted by 5 people bicko chad_davis drastic Evangelia higueruelo
	Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 832-845. by Inbal Halperin, Haim Wolfson, Ruth Nussinov posted by 12 people dfdong mgomes qluo RebeccaHamer bicko gbart ramensky cjeans tale mingzhi friendpine Lombardo_7
	Reaching for high-hanging fruit in drug discovery at protein–protein interfaces [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009. by James A. Wells, Christopher L. Mcclendon posted by 9 people semin allmensch ramensky cjeans chgjb phoenixzxl higueruelo bicko guhjy
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted by 13 people msuarezdiez flbarroso kshameer structural_bioinformatics chad_davis Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
	Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183. by Yuen Ho, Albrecht Gruhler, Adrian Heilbut, et al.Gary D. Bader, Lynda Moore, Sally-Lin L. Adams, Anna Millar, Paul Taylor, Keiryn Bennett, Kelly Boutilier, Lingyun Yang, Cheryl Wolting, Ian Donaldson, Søren Schandorff, Juanita Shewnarane, Mai Vo, Joanne Taggart, Marilyn Goudreault, Brenda Muskat, Cris Alfarano, Danielle Dewar, Zhen Lin, Katerina Michalickova, Andrew R. Willems, Holly Sassi, Peter A. Nielsen, Karina J. Rasmussen, Jens R. Andersen, Lene E. Johansen, Lykke H. Hansen, Hans Jespersen, Alexandre Podtelejnikov, Eva Nielsen, Janne Crawford, Vibeke Poulsen, Birgitte D. Sørensen, Jesper Matthiesen, Ronald C. Hendrickson, Frank Gleeson, Tony Pawson, Michael F. Moran, Daniel Durocher, Matthias Mann, Christopher W. Hogue, Daniel Figeys, Mike Tyers posted by 17 people lpfernandes SarahW lawraga semin okarsligil bicko shivaram lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab iris_2001
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	Scoring residue conservation. [My Copy] Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241. by W. S. Valdar posted by 9 people barry pansapiens bicko sriram_s cjeans sobolevnrm structural_bioinformatics Bioinformatics marti
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted by 15 people dfdong jinghu_fandm flbarroso timg phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
	A simple physical model for binding energy hot spots in proteinâprotein complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121. by Tanja Kortemme, David Baker posted by 10 people chemrahul82 onufriev oceanwind lna jwm bicko cjeans hmk skoddet Nielsen group
	Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e42. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 9 people guhjy aalibes bicko jfr chad_davis cjeans iris_2001 lpfernandes groepl
	High-resolution protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 183-193. by Jeffrey J. Gray posted by 8 people flbarroso aqeel jwm ima bluvsh1 ruvido cjeans higueruelo
	ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions. [My Copy] Bioinformatics, Vol. 17, No. 3. (March 2001), pp. 284-285. by K. S. Thorn, A. A. Bogan posted by 5 people oceanwind bicko chad_davis ruvido higueruelo
	Correlated sequence-signatures as markers of protein-protein interaction. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692. by E. Sprinzak, H. Margalit posted by 11 people behindtherabbit bicko chad_davis maryee dyermd grahamc cjeans lilith wilbur Rhys phoenixzxl
	The molecular architecture of protein-protein binding sites. [My Copy] Current opinion in structural biology, Vol. 17, No. 1. (February 2007), pp. 67-76. by Dana Reichmann, Ofer Rahat, Mati Cohen, Hani Neuvirth, Gideon Schreiber posted by 7 people allmensch laurabailey bicko choonpeng hmk higueruelo marti
	A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1043-1055. by O. Keskin, C. J. Tsai, H. Wolfson, R. Nussinov posted by 9 people flbarroso marti thomaskelder baaden bicko chad_davis nickolay henschel ladab
	Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. [My Copy] Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154. by L. Lu, A. K. Arakaki, H. Lu, J. Skolnick posted by 7 people bicko mdimmic lfriedl chad_davis ruvido cjeans kdl
	From words to literature in structural proteomics. [My Copy] Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225. by A. Sali, R. Glaeser, T. Earnest, W. Baumeister posted by 7 people tomhebbron bicko chad_davis dgront ruvido lpfernandes higueruelo
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450, No. 7167. (14 October 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. McCoy, Randy J. Read, David Baker posted by 19 people bmduggan newton1234 apaydin aheilbut jwm eckart_bindewald ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm baker-group boris_aguilar Ema chenway ardalby OPIG
	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. [My Copy] Genome research, Vol. 14, No. 6. (June 2004), pp. 1107-1118. by Haiyuan Yu, Nicholas M. Luscombe, Hao Xin X. Lu, et al.Xiaowei Zhu, Yu Xia, Jing-Dong D. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, Mark Gerstein posted by 14 people kiekyon rsaito thegoose2 robfsouza carlk C. elegans / WormBase tharris bicko dragonrez chad_davis balajis koller cjeans cerca
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted by 12 people ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF kgutwin
	Statistical analysis and prediction of protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366. by Andrew J. Bordner, Ruben Abagyan posted by 10 people boris_aguilar barry bicko lyongu ameetsoni cjeans structural_bioinformatics Bioinformatics Evangelia marti
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 84 people VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	Predicting protein druggability [My Copy] Drug Discovery Today, Vol. 10, No. 23-24. (December 2005), pp. 1675-1682. by P. Hajduk, J. Huth, C. Tse posted by 7 people ubcg08l tjimenez bicko caporaso massivemayhem biomedical-nlp higueruelo
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	STRING 7--recent developments in the integration and prediction of protein interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by C. von Mering, L. J. Jensen, M. Kuhn, et al.S. Chaffron, T. Doerks, B. Krüger, B. Snel, P. Bork posted by 17 people anf dragonrez druvus Cortel wenhui chad_davis guhjy kuhn balajis fisherp raiyar massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
	Development of unified statistical potentials describing protein-protein interactions. [My Copy] Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901. by H. Lu, L. Lu, J. Skolnick posted by 9 people kaarsinogen bicko mdimmic chad_davis cjeans selrac iris_2001 wilbur kgutwin
	Modelling protein docking using shape complementarity, electrostatics and biochemical information [My Copy] Journal of Molecular Biology, Vol. 272, No. 1. (12 September 1997), pp. 106-120. by Henry A. Gabb, Richard M. Jackson, Michael J. Sternberg posted by 12 people apaydin jwm bicko yongzhao ima ffranca cjeans selrac Radiation_Damage Stressosome TSRI_MGL kintoki
	Protein-protein binding is often associated with changes in protonation state [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Aaron C. Mason, Jan H. Jensen posted by 10 people flbarroso onufriev csrocha bicko sobolevnrm baker-group RamuAnandakrishnan barry structural_bioinformatics McCammon
	Computational methods for biomolecular docking. [My Copy] Curr Opin Struct Biol, Vol. 6, No. 3. (June 1996), pp. 402-406. by T. Lengauer, M. Rarey posted by 3 people Lombardo_7 bicko chad_davis
	3did: interacting protein domains of known three-dimensional structure. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by Amelie Stein, Robert B. Russell, Patrick Aloy posted by 5 people baaden bicko chad_davis grottenolm kintoki
	PIBASE: a comprehensive database of structurally defined protein interfaces. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1901-1907. by F. P. Davis, A. Sali posted by 4 people bicko chad_davis happy_manatee higueruelo
	Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855. by A. Selim Aytuna, Attila Gursoy, Ozlem Keskin posted by 5 people cjeans selrac higueruelo bicko kgutwin
	Optimal docking area: a new method for predicting protein-protein interaction sites. [My Copy] Proteins, Vol. 58, No. 1. (1 January 2005), pp. 134-143. by J. Fernandez-Recio, M. Totrov, C. Skorodumov, R. Abagyan posted by 8 people klexa jwm bicko schlauchi cjeans Radiation_Damage Stressosome marti
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	Scalable molecular dynamics with NAMD [My Copy] Journal of Computational Chemistry, Vol. 26, No. 16. (December 2005), pp. 1781-1802. by James C. Phillips, Rosemary Braun, Wei Wang, et al.James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kalé, Klaus Schulten posted by 26 people krapnik pjkiley flbarroso yxue r2s2 grondina rpetrenko oteri oceanwind dfgreen vahmurk gisle dimka jwm ttjoseph sangeetha yoel_rf bilab wilsoros sobolevnrm Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group ibuch
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	Identification of transient hub proteins and the possible structural basis for their multiple interactions. [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 1. (1 January 2008), pp. 72-78. by Miho Higurashi, Takashi Ishida, Kengo Kinoshita posted by 6 people somak bicko chad_davis balicea allmensch marti
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	A simple method for displaying the hydropathic character of a protein. [My Copy] Journal of molecular biology, Vol. 157, No. 1. (5 May 1982), pp. 105-132. by J. Kyte, R. F. Doolittle posted by 9 people barmak7282 hryk thaliana chad_davis dgront medic0747 ashaytan Ema bicko
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	An analysis of conformational changes on proteinprotein association: implications for predictive docking [My Copy] Protein Eng., Vol. 12, No. 4. (1 April 1999), pp. 271-283. by Matthew J. Betts, Michael J. E. Sternberg posted by 5 people boris_aguilar mijogiffin bicko ffranca chad_davis
	Comprehensive statistical analysis of residues interaction specificity at protein-protein interfaces. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 1060-1077. by A. Anashkina, E. Kuznetsov, N. Esipova, V. Tumanyan posted by 3 people higueruelo bicko choonpeng
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	InterPreTS: protein interaction prediction through tertiary structure. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162. by P. Aloy, R. B. Russell posted by 7 people kgutwin baaden bicko chad_davis henschel ruvido Pao-Yang
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	Cataloging the relationships between proteins: a review of interaction databases. [My Copy] Mol Biotechnol, Vol. 34, No. 1. (September 2006), pp. 69-93. by C. Rohl, Y. Price, T. B. Fischer, M. Paczkowski, M. F. Zettel, J. Tsai posted by 3 people flbarroso bicko chad_davis
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	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted by 10 people ana barry gbart cjeans tale structural_bioinformatics Bioinformatics friendpine ca3295 Lombardo_7
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	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted by 22 people MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes kdl Bioinformatics shikin hplatero csanford carlk
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	A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction. [My Copy] Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153. by E. Eyal, M. Frenkel-Morgenstern, V. Sobolev, S. Pietrokovski posted by 6 people dfdong qluo RebeccaHamer bicko cjeans Lombardo_7
	RESTRICTED MOBILITY OF CONSERVED RESIDUES IN PROTEIN-PROTEIN INTERFACES IN MOLECULAR SIMULATIONS. [My Copy] Biophys J (28 January 2008) by S Bora B. Erdemli, O Nuri N. Yogurtcu, Metin Turkay, Ruth Nussinov, Ozlem Keskin posted by 4 people bicko jlh64 marti higueruelo
	Similar chemistry, but different bond preferences in inter versus intra-protein interactions. [My Copy] Proteins (7 February 2008) by Mati Cohen, Dana Reichmann, Hani Neuvirth, Gideon Schreiber posted by 6 people kgutwin RebeccaHamer viktor21614 bicko higueruelo Lombardo_7
	Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach. [My Copy] Physical biology, Vol. 2, No. 2. (June 2005) by Ozlem Keskin, Buyong Ma, Kristina Rogale, K. Gunasekaran, Ruth Nussinov posted by 4 people marti bicko choonpeng higueruelo
	<FONT SIZE='-2'>CHARMM</FONT>: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (1983), pp. 187-217. by Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus posted by 17 people ubcg08l flbarroso nickolay newton1234 kgutwin r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan gisle
	Data growth and its impact on the SCOP database: new developments. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by Antonina Andreeva, Dave Howorth, John-Marc M. Chandonia, et al.Steven E. Brenner, Tim J. Hubbard, Cyrus Chothia, Alexey G. Murzin posted by 6 people bicko timhubbard yuslinaz druvus chad_davis reyez
	The third dimension for protein interactions and complexes. [My Copy] Trends in biochemical sciences, Vol. 27, No. 12. (December 2002), pp. 633-638. by P. Aloy, R. B. Russell posted by 4 people chica bicko chad_davis dgront