Katerina Kalogeropoulou's Top Recommendations

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	The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 524-531. by M. Hucka, A. Finney, H. M. Sauro, et al.H. Bolouri, J. C. Doyle, H. Kitano, and the rest of the SBML Forum:, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J. H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novere, L. M. Loew, D. Lucio, P. Mendes, E. Minch, E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K. Takahashi, M. Tomita, J. Wagner, J. Wang posted by 23 people jporternj daforerog Jiang Research Group whitead antonkratz michaelbarton allysonlister rh020 shikin subhacom irenas husain easr balajis wnpx jbchang lenov dbk-lab nicholasflann pmendes csanford AlexanderPico dullhunk
	Metabolomics and systems biology: making sense of the soup. [My Copy] Curr Opin Microbiol, Vol. 7, No. 3. (June 2004), pp. 296-307. by D. B. Kell posted by 15 people camster snuppepuppan dbk irenas BragilMassoud betainverse rmj001 ssaw kuhn wnpx daniel_schober jrbanga streptomyces dbk-lab JeremyZucker
	Text mining and its potential applications in systems biology. [My Copy] Trends Biotechnol (11 October 2006) by Sophia Ananiadou, Douglas B B. Kell, Jun-Ichi I. Tsujii posted by 22 people babaluma artaban421 ImagCom - Biomedical Text Computing eesruiz liblab henk-cul guhjy irenas jfr yas dullhunk fisherp jacky957 daniel_schober dejori pablomendes dbk-lab T_lab pmendes TheresaNiederberger alanrw satre
	Computational systems biology. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210. by Hiroaki Kitano posted by 33 people dadiamah schwartzjmc jporternj tom4m3 schmidtm jaimie nedwards dansullivanblk Jarman Lab ggallone daforerog reyez frohike irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc dbk-lab TCR_Signaling SysbioMPI-TCells livingthing maburkitt shikin GeneGo
	Can a biologist fix a radio?--Or, what I learned while studying apoptosis. [My Copy] Cancer cell, Vol. 2, No. 3. (September 2002), pp. 179-182. by Yuri Lazebnik posted by 29 people daforerog cambray Borelli arne allysonlister babakap rschulz rklancer dbk irenas manduca monod chihchun_chen massivemayhem gisle streptomyces dbk-lab Tominator mattjb ComplexAdaptiveSystems DSTO-CAS balicea quianominorleo tvdbulck dbikard Centre de Recherches Interdisciplinaires SynBioSys leilaperie bayesian
	An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (29 January 2004) by R. Stanislaus, L. H. Jiang, M. Swartz, J. Arthur, J. S. Almeida posted by 7 people moonhouse tanabata irenas andytseng dbk-lab fgibson GelML
	Machine Learning of Functional Class from Phenotype Data [My Copy] (2002) by A. Clare, R. King posted by 5 people dbk irenas LeightonP streptomyces dbk-lab
	Creating a bioinformatics nation. [My Copy] Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120. by Lincoln Stein posted by 15 people pekrau druvus irenas andytseng balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes dbk-lab rvosa fgibson
	Metabolomics and machine learning: explanatory analysis of complex metabolome data using genetic programming to produce simple, robust rules. [My Copy] Mol Biol Rep, Vol. 29, No. 1-2. (2002), pp. 237-241. by D. B. Kell posted by 4 people dbk irenas streptomyces dbk-lab
	Monitoring of complex industrial bioprocesses for metabolite concentrations using modern spectroscopies and machine learning: application to gibberellic acid production. [My Copy] Biotechnol Bioeng, Vol. 78, No. 5. (5 June 2002), pp. 527-538. by A. C. McGovern, D. Broadhurst, J. Taylor, et al.N. Kaderbhai, M. K. Winson, D. A. Small, J. J. Rowland, D. B. Kell, R. Goodacre posted by 4 people dbk irenas streptomyces dbk-lab
	On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning. [My Copy] Trends Biotechnol, Vol. 18, No. 3. (March 2000), pp. 93-98. by D. B. Kell, R. D. King posted by 4 people dbk irenas streptomyces dbk-lab
	Systematic functional analysis of the yeast genome. [My Copy] Trends Biotechnol, Vol. 16, No. 9. (September 1998), pp. 373-378. by S. G. Oliver, M. K. Winson, D. B. Kell, F. Baganz posted by 5 people dbk irenas rmj001 streptomyces dbk-lab
	Facts from text-is text mining ready to deliver? [My Copy] PLoS Biol, Vol. 3, No. 2. (February 2005) by D. Rebholz-Schuhmann, H. Kirsch, F. Couto posted by 20 people arafalov henk-cul raiyar snuppepuppan irenas yas dullhunk t11 onca dgront caporaso shimah78us daniel_schober dejori dbk-lab T_lab biomedical-nlp adoms jfr hpiwowar
	Relations in biomedical ontologies. [My Copy] Genome biology, Vol. 6, No. 5. (2005), R46. by Barry Smith, Werner Ceusters, Bert Klagges, et al.Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan L. Rector, Cornelius Rosse posted by 20 people vkwn Scis0000002 irenas setar gorlitsky yas dullhunk onca JeremyZucker helliontroy leechuck PunkRock RockHI dbk-lab T_lab biomedical-nlp MetabolicModeling thau lenov Mechouche
	Taverna: a tool for the composition and enactment of bioinformatics workflows. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 17. (22 November 2004), pp. 3045-3054. by Tom Oinn, Matthew Addis, Justin Ferris, et al.Darren Marvin, Martin Senger, Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li posted by 25 people kshameer isimpson mtaschuk djohnson egonw pekrau gquigley thegoose2 tjtaylor shikin oeli4321 zufar niallhaslam druvus irenas guhjy moborg wnpx dullhunk fisherp dbk-lab marpin nicklynch tharris alanrw
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	A common open representation of mass spectrometry data and its application to proteomics research [My Copy] Nature Biotechnology, Vol. 22, No. 11. (04 November 2004), 1459. by Patrick G. A. Pedrioli, Jimmy K. Eng, Robert Hubley, et al.Mathijs Vogelzang, Eric W. Deutsch, Brian Raught, Brian Pratt, Erik Nilsson, Ruth H. Angeletti, Rolf Apweiler, Kei Cheung, Catherine E. Costello, Henning Hermjakob, Sequin Huang, Randall K. Julian, Eugene Kapp, Mark E. Mccomb, Stephen G. Oliver, Gilbert Omenn, Norman W. Paton, Richard Simpson, Richard Smith, Chris F. Taylor, Weimin Zhu, Ruedi Aebersold posted by 11 people moonhouse robert talponer irenas lwilliams andytseng agileproteomics Gehrke nedwards dbk-lab alanrw
	Summary recommendations for standardization and reporting of metabolic analyses. [My Copy] Nat Biotechnol, Vol. 23, No. 7. (July 2005), pp. 833-838. by J. C. Lindon, J. K. Nicholson, E. Holmes, et al.H. C. Keun, A. Craig, J. T. Pearce, S. J. Bruce, N. Hardy, S. A. Sansone, H. Antti, P. Jonsson, C. Daykin, M. Navarange, R. D. Beger, E. R. Verheij, A. Amberg, D. Baunsgaard, G. H. Cantor, L. Lehman-McKeeman, M. Earll, S. Wold, E. Johansson, J. N. Haselden, K. Kramer, C. Thomas, J. Lindberg, I. Schuppe-Koistinen, I. D. Wilson, M. D. Reily, D. G. Robertson, H. Senn, A. Krotzky, S. Kochhar, J. Powell, F. van der Ouderaa, R. Plumb, H. Schaefer, M. Spraul posted by 6 people irenas betainverse andytseng daniel_schober BIBLIOma dbk-lab
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted by 26 people dadiamah m_j pmendes windman83 jfr raiyar neilswainston irenas MetabolicModeling JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk BergmanLab michaelbarton ptrobajo neils dullhunk pengchy tmmurali
	Textpresso: an ontology-based information retrieval and extraction system for biological literature. [My Copy] PLoS biology, Vol. 2, No. 11. (November 2004) by Hans-Michael M. Müller, Eimear E. Kenny, Paul W. Sternberg posted by 21 people artaban421 mitko thegoose2 liblab C. elegans / WormBase tharris irenas Enro guhjy yas dullhunk hpiwowar fisherp zlu daniel_schober diogomartins mroos dbk-lab T_lab AID vlachmore
	Semantic similarity measures as tools for exploring the gene ontology. [My Copy] Pac Symp Biocomput (2003), pp. 601-612. by P. W. Lord, R. D. Stevens, A. Brass, C. A. Goble posted by 13 people stefanorb irenas andytseng CitoJam ejmeij gaudan josemblazquez macavity1g sgoetz dbk-lab ilps LanguageModeling pmidford
	The Unified Medical Language System (UMLS): integrating biomedical terminology [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D267-270. by Olivier Bodenreider posted by 14 people balajis guhjy guelke irenas kuhn wnpx jandot bundschu josepe kkaiser leechuck sgoetz dbk-lab IEG
	Proteomics. Public-private group maps out initiatives. [My Copy] Science, Vol. 296, No. 5569. (3 May 2002) by J. Kaiser posted by 5 people irenas andytseng dbk-lab fgibson GelML
	Will a biological database be different from a biological journal? [My Copy] PLoS Comput Biol, Vol. 1, No. 3. (August 2005), pp. 179-181. by P. Bourne posted by 10 people vkwn lesikv fgibson irenas dullhunk hpiwowar stajich florianleitner dbk-lab Mycology
	The Molecular Biology Database Collection: 2005 update. [My Copy] Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005) by M. Y. Galperin posted by 10 people sgoetz snuppepuppan irenas korakot nearora dullhunk Philosophy_of_Information dbk-lab Blog_and_Wiki_Research shikin
	From XML to RDF: how semantic web technologies will change the design of 'omic' standards [My Copy] Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103. by Xiaoshu Wang, Robert Gorlitsky, Jonas S. Almeida posted by 20 people allysonlister egonw ImagCom - Biomedical Text Computing eesruiz rvosa druvus badger_master irenas andytseng moborg wnpx dullhunk hpiwowar ianturton mza jmuhlich ibuch dbk-lab SorgerLab dansullivanblk
	Biomedical language processing: what's beyond PubMed? [My Copy] Molecular cell, Vol. 21, No. 5. (3 March 2006), pp. 589-594. by Lawrence Hunter, K. Bretonnel Cohen posted by 21 people babaluma billhao Gaetan artaban421 robert85 lmichan gavinhoran ogenex henk-cul farzanehs irenas andytseng yas hpiwowar caporaso jacky957 dbk-lab T_lab biomedical-nlp TheresaNiederberger satre
	IntAct: an open source molecular interaction database. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by H. Hermjakob, L. Montecchi-Palazzi, C. Lewington, et al.S. Mudali, S. Kerrien, S. Orchard, M. Vingron, B. Roechert, P. Roepstorff, A. Valencia, H. Margalit, J. Armstrong, A. Bairoch, G. Cesareni, D. Sherman, R. Apweiler posted by 11 people egonw diamantis irenas fisherp frohike grahamc lpfernandes dbk-lab wilbur jeremymiller satre
	PEDRo: a database for storing, searching and disseminating experimental proteomics data. [My Copy] BMC Genomics, Vol. 5, No. 1. (17 September 2004) by K. Garwood, T. McLaughlin, C. Garwood, et al.S. Joens, N. Morrison, C. F. Taylor, K. Carroll, C. Evans, A. D. Whetton, S. Hart, D. Stead, Z. Yin, A. J. Brown, A. Hesketh, K. Chater, L. Hansson, M. Mewissen, P. Ghazal, J. Howard, K. S. Lilley, S. J. Gaskell, A. Brass, S. J. Hubbard, S. G. Oliver, N. W. Paton posted by 6 people irenas andytseng dullhunk agileproteomics dbk-lab guhjy
	A literature network of human genes for high-throughput analysis of gene expression. [My Copy] Nature genetics, Vol. 28, No. 1. (May 2001), pp. 21-28. by T. K. Jenssen, A. Laegreid, J. Komorowski, E. Hovig posted by 18 people vkwn biblio24 guhjy robert85 irenas miguel okarsligil lfriedl yas balajis benny dullhunk dbk-lab kdl Bioinformatics T_lab adoms TheresaNiederberger
	Content-rich biological network constructed by mining PubMed abstracts [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (8 October 2004), 147. by Hao Chen, Burt Sharp posted by 14 people mitko gavinhoran BergmanLab cisevol snuppepuppan irenas Enro BioGeek fisherp jeremymiller daniel_schober dbk-lab GeschwindLab adoms
	Are the current ontologies in biology good ontologies? [My Copy] Nature Biotechnology, Vol. 23, No. 9. (01 September 2005), pp. 1095-1098. by Larisa N. Soldatova, Ross D. King posted by 23 people operon Life Sciences Semantic Web (LSSW) mikel_egana dagmar vkwn jerome irenas Yanno wcrosbie yas dullhunk onca anon_pl mhucka jmuhlich leechuck pablomendes dbk-lab Wikipedia CoP_CMS T_lab peterli dansullivanblk
	Which gene did you mean? [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (7 June 2005) by B. Mons posted by 15 people druvus fgibson BergmanLab cisevol irenas dullhunk hpiwowar mcockerill dalloliogm dbk-lab Web2 splicing yeast sci91078 Barend
	Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. [My Copy] Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904. by L. Pritchard, D. B. Kell posted by 9 people pmendes schwartzjmc peterli michaelbarton dbk LeightonP streptomyces dbk-lab dullhunk
	A uniform proteomics MS/MS analysis platform utilizing open XML file formats [My Copy] Molecular Systems Biology, Vol. 1, No. 1. (02 August 2005), pp. msb4100024-E1-msb4100024-E8. by Andrew Keller, Jimmy Eng, Ning Zhang, Xiao-Jun Li, Ruedi Aebersold posted by 5 people moonhouse robert irenas nedwards dbk-lab
	Pedro: a configurable data entry tool for XML. [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2463-2465. by K. L. Garwood, C. F. Taylor, K. J. Runte, A. Brass, S. G. Oliver, N. W. Paton posted by 4 people irenas andytseng dullhunk dbk-lab
	Exploration of essential gene functions via titratable promoter alleles. [My Copy] Cell, Vol. 118, No. 1. (9 July 2004), pp. 31-44. by S. Mnaimneh, A. P. Davierwala, J. Haynes, et al.J. Moffat, W. T. Peng, W. Zhang, X. Yang, J. Pootoolal, G. Chua, A. Lopez, M. Trochesset, D. Morse, N. J. Krogan, S. L. Hiley, Z. Li, Q. Morris, J. Grigull, N. Mitsakakis, C. J. Roberts, J. F. Greenblatt, C. Boone, C. A. Kaiser, B. J. Andrews, T. R. Hughes posted by 7 people michaelbarton raiyar irenas chasmand nickluscombe dbk-lab EBI-regulation
	Designing XML schemas for bioinformatics. [My Copy] Biotechniques, Vol. 34, No. 6. (June 2003) by R. E. Bruhn, P. J. Burton posted by 4 people irenas andytseng dullhunk dbk-lab
	Integrating biological databases. [My Copy] Nature reviews. Genetics, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted by 9 people pekrau thomaskelder irenas dullhunk fisherp myui mhucka kynn dbk-lab
	Text mining and ontologies in biomedicine: Making sense of raw text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 239-251. by Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar posted by 24 people babaluma lmichan tsunol artaban421 daforerog liblab Bioinformatics svozil NLP arafalov henk-cul farzanehs lauras irenas andytseng yas hpiwowar helliontroy johnkork daniel_schober dbk-lab T_lab biomedical-nlp yggdrasil
	National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge [My Copy] OMICS: A Journal of Integrative Biology, Vol. 10, No. 2. (June 2006), pp. 185-198. by Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, et al.Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G. Chute, Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F. Noy, Mark A. Musen posted by 12 people jonathancooper bertelsen vkwn irenas yas balajis dullhunk RockHI sobolevnrm dbk-lab T_lab baker-group
	ExPASy: The proteomics server for in-depth protein knowledge and analysis. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3784-3788. by E. Gasteiger, A. Gattiker, C. Hoogland, I. Ivanyi, R. D. Appel, A. Bairoch posted by 6 people irenas ziquje dbk-lab grottenolm GelML fgibson
	Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era [My Copy] BioEssays, Vol. 26, No. 1. (January 2004), pp. 99-105. by Douglas B. Kell, Stephen G. Oliver posted by 14 people yyfwuhan abhishek_tiwari VGreiff srp33 bicko dbk chad_davis dullhunk fisherp streptomyces dbk-lab JeremyZucker Zephyrus Roswell Cancer Crosstalk
	Metabolomics--the link between genotypes and phenotypes. [My Copy] Plant Mol Biol, Vol. 48, No. 1-2. (January 2002), pp. 155-171. by O. Fiehn posted by 9 people irenas betainverse cate akeyj fisherp egonw drsandrug dbk-lab biospec
	Biology's name game. [My Copy] Nature, Vol. 411, No. 6838. (7 June 2001), pp. 631-632. by H. Pearson posted by 6 people fisherp irenas yas dullhunk dbk-lab T_lab
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted by 34 people bertelsen dadiamah ajsferreira Thaverkamp sjcockell JeremyZucker jperkins vkwn pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Plant metabolomics: large-scale phytochemistry in the functional genomics era. [My Copy] Phytochemistry, Vol. 62, No. 6. (March 2003), pp. 817-836. by L. W. Sumner, P. Mendes, R. A. Dixon posted by 4 people ajaymalik irenas dbk-lab pmendes
	A survey of current work in biomedical text mining [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 57-71. by Aaron M. Cohen, William R. Hersh posted by 40 people babaluma artaban421 lmichan daforerog guelke eesruiz Bioinformatics blogbrain fitzgeraldp2 henk-cul lauras mitko vkwn BergmanLab cisevol irenas carlblesius route145 yas natsu t11 hpiwowar fisherp biblio24 bhaddow johnkork c061978 kkaiser benfqt dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab Evidence-based-medicine IEG farzanehs satre lillejul TheresaNiederberger
	Saccharomyces genome database: Underlying principles and organisation [My Copy] Brief Bioinform, Vol. 5, No. 1. (1 January 2004), pp. 9-22. by Selina S. Dwight, Rama Balakrishnan, Karen R. Christie, et al.Maria C. Costanzo, Kara Dolinski, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, Shuai Weng, David Botstein, J. Michael Cherry posted by 6 people mtaschuk mgomes peterli irenas dullhunk dbk-lab
	XML, bioinformatics and data integration. [My Copy] Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 115-125. by F. Achard, G. Vaysseix, E. Barillot posted by 10 people irenas ingo andytseng yas dullhunk myui cjeans dbk-lab T_lab rvosa
	Systems Biology: A Brief Overview [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664. by Hiroaki Kitano posted by 47 people allysonlister dagmar pjmaybank kokphinchooi schmidtm abhishek_tiwari fgibson roys daforerog Scis0000002 agomez smac tlse65 fierykylin Adso dansullivanblk rsantana joseph_x_zhou reyez softsimu irenas Yanno Borelli wnpx biosv shivakumar3_14 dgront kehan cconboy mmt margaritis grahamc roland_ewald carmaus dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock jdiezperezj maburkitt mertnuhoglu edvin lenov soramame_0518 nsamways
	Top-down standards will not serve systems biology. [My Copy] Nature, Vol. 440, No. 7080. (2 March 2006), pp. 24-24. by John Quackenbush, Christian Stoeckert, Catherine Ball, et al.Alvis Brazma, Robert Gentleman, Wolfgang Huber, Rafael Irizarry, Marc Salit, Gavin Sherlock, Paul Spellman, Neil Winegarden posted by 6 people neilswainston irenas andytseng wnpx mhucka dbk-lab
	Distribution of information in biomedical abstracts and full-text publications. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2597-2604. by M. J. Schuemie, M. Weeber, B. J. Schijvenaars, et al.E. M. van Mulligen, C. C. van der Eijk, R. Jelier, B. Mons, J. A. Kors posted by 18 people artaban421 BergmanLab cisevol fisherp robert85 snuppepuppan irenas korakot yas hpiwowar helliontroy bhaddow Philosophy_of_Information dbk-lab Blog_and_Wiki_Research T_lab biomedical-nlp Barend
	Tagging gene and protein names in biomedical text. [My Copy] Bioinformatics, Vol. 18, No. 8. (August 2002), pp. 1124-1132. by L. Tanabe, W. J. Wilbur posted by 14 people ImagCom - Biomedical Text Computing eesruiz BergmanLab cisevol irenas jelsas fisherp zlu bundschu flint johnkork gaudan dbk-lab generif_paper
	Biomedical literature mining: challenges and solutions in the 'omics' era. [My Copy] Am J Pharmacogenomics, Vol. 4, No. 6. (2004), pp. 383-393. by D. Chaussabel posted by 7 people artaban421 irenas Enro andytseng qfwills daniel_schober dbk-lab
	Should software hold data hostage? [My Copy] Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1037-1038. by H. S. Wiley, G. S. Michaels posted by 4 people jmeppley irenas hpiwowar dbk-lab
	Using XML technology for the ontology-based semantic integration of life science databases. [My Copy] IEEE Trans Inf Technol Biomed, Vol. 8, No. 2. (June 2004), pp. 154-160. by S. Philippi, J. Köhler posted by 4 people irenas andytseng agileproteomics dbk-lab
	Identifying biological themes within lists of genes with EASE. [My Copy] Genome biology, Vol. 4, No. 10. (2003) by D. A. Hosack, G. Dennis, B. T. Sherman, H. C. Lane, R. A. Lempicki posted by 6 people VGreiff irenas jeremymiller dbk-lab GeschwindLab capitall
	GMD@CSB.DB: the Golm Metabolome Database. [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1635-1638. by J. Kopka, N. Schauer, S. Krueger, et al.C. Birkemeyer, B. Usadel, E. Bergmüller, P. Dörmann, W. Weckwerth, Y. Gibon, M. Stitt, L. Willmitzer, A. R. Fernie, D. Steinhauser posted by 4 people irenas andytseng daniel_schober dbk-lab
	PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 October 2006), 424. by Maksim Plikus, Zina Zhang, Cheng M. Chuong posted by 14 people carelcad artaban421 lmichan dmolla daforerog ajaymalik irenas Enro yas dullhunk Gaetan dbk-lab T_lab adoms
	An algorithm for suffix stripping [My Copy] (1997), pp. 313-316. by M. F. Porter posted by 17 people robert85 scorreia_pro cmalek anthropomorphism uki chrisd eddymier irenas bundschu frohike rlai Documentation_IFP_RKA dbk-lab MITCCI jgronski creswick satre
	GIMS: an integrated data storage and analysis environment for genomic and functional data. [My Copy] Yeast, Vol. 20, No. 15. (November 2003), pp. 1291-1306. by M. Cornell, N. W. Paton, C. Hedeler, et al.P. Kirby, D. Delneri, A. Hayes, S. G. Oliver posted by 4 people irenas dullhunk dbk-lab alanrw
	StarDOM: from STAR format to XML. [My Copy] J Biomol NMR, Vol. 15, No. 2. (October 1999), pp. 169-172. by J. P. Linge, M. Nilges, L. Ehrlich posted by 3 people irenas andytseng dbk-lab
	SGD: Saccharomyces Genome Database. [My Copy] Nucleic acids research, Vol. 26, No. 1. (1 January 1998), pp. 73-79. by J. M. Cherry, C. Adler, C. Ball, et al.S. A. Chervitz, S. S. Dwight, E. T. Hester, Y. Jia, G. Juvik, T. Roe, M. Schroeder, S. Weng, D. Botstein posted by 9 people tienholin schwalb leechuck irenas RMGraze lusk nklee dbk-lab CitoJam
	BMC Bioinformatics comes of age. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. J. Cockerill posted by 7 people 8_01 lilith irenas moborg dullhunk dbk-lab sci91078
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted by 24 people snow_dragon freesci isotelesis eesruiz aelef jiny irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki dbk-lab kdl EBI-regulation balicea svdate ellakat roys
	Term identification in the biomedical literature. [My Copy] J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 512-526. by M. Krauthammer, G. Nenadic posted by 15 people artaban421 Bioinformatics svozil BergmanLab cisevol irenas kslibrarian bourne yas bhaddow kkaiser dbk-lab T_lab IEG akastrin
	Data Migration from Relational Database to XML: A Mammography Educational Case Study. [My Copy] Medinfo, Vol. 2004, No. CD. (2004) by M. Wu posted by 3 people irenas andytseng dbk-lab
	GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3710-3715. by E. I. Boyle, S. Weng, J. Gollub, et al.H. Jin, D. Botstein, J. M. Cherry, G. Sherlock posted by 6 people arider1 irenas balajis nuke2005 macavity1g dbk-lab
	Extracting clinical cases from XML-based electronic patient records for use in web-based medical case based reasoning systems. [My Copy] Medinfo, Vol. 10, No. Pt 1. (2001), pp. 643-647. by S. Manickam, S. S. Abidi posted by 3 people irenas andytseng dbk-lab
	Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML. [My Copy] Pac Symp Biocomput (2002), pp. 88-99. by D. L. Rubin, M. Hewett, D. E. Oliver, T. E. Klein, R. B. Altman posted by 3 people irenas andytseng dbk-lab
	Metabolomics breaks the silence. [My Copy] Trends Microbiol, Vol. 9, No. 4. (April 2001) by G. H. Thomas posted by 3 people irenas andytseng dbk-lab
	Dynamic XML-based exchange of relational data: application to the Human Brain Project. [My Copy] AMIA Annu Symp Proc (2003), pp. 644-648. by Z. Tang, Y. Kadiyska, H. Li, D. Suciu, J. F. Brinkley posted by 3 people irenas andytseng dbk-lab
	YAdumper: extracting and translating large information volumes from relational databases to structured flat files. [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2455-2457. by J. M. Fernández, A. Valencia posted by 3 people irenas andytseng dbk-lab
	Plug-and-play XML: a health care perspective. [My Copy] J Am Med Inform Assoc, Vol. 9, No. 1. (b 2002), pp. 37-48. by R. Schweiger, S. Hoelzer, U. Altmann, J. Rieger, J. Dudeck posted by 4 people irenas andytseng m5101202 dbk-lab
	Conceptual data modelling for bioinformatics [My Copy] Brief Bioinform, Vol. 3, No. 2. (1 January 2002), pp. 166-180. by Erich Bornberg-Bauer, Norman W. Paton posted by 9 people abhishek_tiwari irenas dalloliogm sgoetz dbk-lab Web2 splicing yeast alanrw
	The -omics era and its impact. [My Copy] Arch Pathol Lab Med, Vol. 128, No. 12. (December 2004), pp. 1337-1345. by F. L. Kiechle, X. Zhang, C. A. Holland-Staley posted by 3 people irenas andytseng dbk-lab
	Automated manipulation of systems biology models using libSBML within Taverna workflows. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 287-289. by Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell posted by 13 people pekrau leemond31 Scis0000002 pmendes druvus guhjy chad_davis dullhunk fisherp bootsy dbk dbk-lab alanrw
	A simple and practical dictionary-based approach for identification of proteins in Medline abstracts. [My Copy] J Am Med Inform Assoc, Vol. 11, No. 3. (n 2004), pp. 174-178. by S. Egorov, A. Yuryev, N. Daraselia posted by 4 people irenas dullhunk gaudan dbk-lab
	MedScan, a natural language processing engine for MEDLINE abstracts. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1699-1706. by S. Novichkova, S. Egorov, N. Daraselia posted by 7 people ekotelnikova irenas yas natsu dullhunk dbk-lab T_lab
	MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling. [My Copy] Biotechniques, Vol. 27, No. 6. (December 1999) by L. Tanabe, U. Scherf, L. H. Smith, J. K. Lee, L. Hunter, J. N. Weinstein posted by 7 people fisherp irenas Enro yas simmie dbk-lab T_lab
	Integration of text- and data-mining using ontologies successfully selects disease gene candidates. [My Copy] Nucleic acids research, Vol. 33, No. 5. (2005), pp. 1544-1552. by Nicki Tiffin, Janet F. Kelso, Alan R. Powell, Hong Pan, Vladimir B. Bajic, Winston A. Hide posted by 9 people carelcad henk-cul daforerog irenas yas benny fisherp dbk-lab T_lab
	GENOMICS: A Crisis in Postgenomic Nomenclature [My Copy] Science, Vol. 296, No. 5568. (26 April 2002), pp. 671-672. by Stanley Fields, Mark Johnston posted by 3 people irenas andytseng dbk-lab
	COBrA: a bio-ontology editor. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 825-826. by S. Aitken, R. Korf, B. Webber, J. Bard posted by 3 people irenas dullhunk dbk-lab
	Combination of text-mining algorithms increases the performance. [My Copy] Bioinformatics (9 June 2006) by Rainer Malik, Lude Franke, Arno Siebes posted by 15 people bqchinh BergmanLab cisevol snuppepuppan irenas guhjy yas fisherp caporaso markymaypo dbk-lab T_lab biomedical-nlp ARTFL soramame_0518
	Metabolomics reviewed: a new "omics" platform technology for systems biology and implications for natural products research. [My Copy] J Nat Prod, Vol. 68, No. 12. (December 2005), pp. 1813-1820. by S. Rochfort posted by 6 people balicea irenas imouthesmp daniel_schober dbk-lab wilbur
	Fusion of mass spectrometry-based metabolomics data. [My Copy] Anal Chem, Vol. 77, No. 20. (15 October 2005), pp. 6729-6736. by A. K. Smilde, M. J. van der Werf, S. Bijlsma, B. J. van der Werff-van der Vat, R. H. Jellema posted by 5 people mayercd irenas andytseng rvosa dbk-lab
	Metabolic footprinting and systems biology: the medium is the message [My Copy] Nature Reviews Microbiology, Vol. 3, No. 7. (01 July 2005), pp. 557-565. by Douglas B. Kell, Marie Brown, Hazel M. Davey, Warwick B. Dunn, Irena Spasic, Stephen G. Oliver posted by 7 people pauldobson irenas andytseng Borelli alexg dbk-lab bayesian
	Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (4 May 2006) by Marc Aubry, Annabelle Monnier, Celine Chicault, et al.Marie de Tayrac, Marie-Dominique D. Galibert, Anita Burgun, Jean Mosser posted by 10 people irenas yas dullhunk caporaso kkaiser yggdrasil dbk-lab T_lab biomedical-nlp IEG
	Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2049-2058. by R. Jelier, G. Jenster, L. C. Dorssers, et al.C. C. van der Eijk, E. M. van Mulligen, B. Mons, J. A. Kors posted by 10 people robjelier irenas BioGeek yas fisherp daniel_schober dbk-lab T_lab vlachmore Barend
	BioIE: extracting informative sentences from the biomedical literature. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2138-2139. by A. Divoli, T. K. Attwood posted by 4 people irenas dullhunk dbk-lab vlachmore
	Conceptual modelling of genomic information. [My Copy] Bioinformatics, Vol. 16, No. 6. (June 2000), pp. 548-557. by N. W. Paton, S. A. Khan, A. Hayes, et al.F. Moussouni, A. Brass, K. Eilbeck, C. A. Goble, S. J. Hubbard, S. G. Oliver posted by 4 people irenas dullhunk dbk-lab quefir
	The Molecular Biology Database Collection: 2004 update. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by M. Y. Galperin posted by 3 people irenas dullhunk dbk-lab
	The molecular biology database collection: an online compilation of relevant database resources. [My Copy] Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 1-7. by A. D. Baxevanis posted by 3 people irenas dullhunk dbk-lab
	The Molecular Biology Database Collection: 2003 update. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 1-12. by A. D. Baxevanis posted by 3 people irenas dullhunk dbk-lab
	The Molecular Biology Database Collection: 2002 update. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 1-12. by A. D. Baxevanis posted by 3 people irenas dullhunk dbk-lab
	The Molecular Biology Database Collection: an updated compilation of biological database resources. [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 1-10. by A. D. Baxevanis posted by 3 people irenas dullhunk dbk-lab
	Molecular Biology Database List. [My Copy] Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 1-9. by C. Burks posted by 3 people irenas dullhunk dbk-lab
	Text-mining and information-retrieval services for molecular biology [My Copy] Genome Biology, Vol. 6, No. 7. (2005), 224. by Martin Krallinger, Alfonso Valencia posted by 26 people wkretzsch Bioinformatics carelcad artaban421 Scis0000002 martingerner lmichan henk-cul vkwn A_Hoogendam fisherp irenas Enro carlblesius textoris yas caporaso shimah78us cjeans dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp spinaltap526
	Text Detective: a rule-based system for gene annotation in biomedical texts. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by J. Tamames posted by 5 people irenas johnkork gaudan sgoetz dbk-lab