Kevin Channon's Top Recommendations

These recommendations were last updated about 5 hours ago.

	Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by Alexey V V. Gribenko, Mayank M M. Patel, Jiajing Liu, Scott A A. McCallum, Chunyu Wang, George I I. Makhatadze posted by 7 people baker-group sobolevnrm grahamc amishp structural_bioinformatics McCammon barry
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted by 10 people pjkiley scampos klexa nanonan structural_bioinformatics McCammon barry baker-group sobolevnrm paulschlesinger
	Fundamental Aspects of Protein−Protein Association Kinetics [My Copy] Chemical Reviews, Vol. 109, No. 3. (11 March 2009), pp. 839-860. by G. Schreiber, G. Haran, H. X. Zhou posted by 13 people anuragsethi barry sunhwan McCammon jmccammon baker-group sobolevnrm willard kafuitay carlosjavierna sschurer hadesnumb paulschlesinger
	Computations of Standard Binding Free Energies with Molecular Dynamics Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 8. (26 February 2009), pp. 2234-2246. by Yuqing Deng, Benoît Roux posted by 12 people anuragsethi flbarroso mikaellund baker-group sobolevnrm barry McCammon jmccammon willard agrossfield carlosjavierna ibuch
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted by 47 people Geknitics pekrau Systems_Biology Computational_Systems_Biology Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose Structural Biology Group TorVergata oteri cmzmasek jwm guhjy Journal picks AlexBateman daforerog ltitodem Thaverkamp baker-group sobolevnrm psique Bioinformatics dswan neils dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services jago kshameer operon svozil
	Nanoparticle-induced surface reconstruction of phospholipid membranes [My Copy] Proceedings of the National Academy of Sciences (14 November 2008) by Bo Wang, Liangfang Zhang, Sung C. Bae, Steve Granick posted by 4 people baker-group sobolevnrm paulschlesinger kshundyak
	Membrane shape as a reporter for applied forces [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 49. (9 December 2008), pp. 19253-19257. by Heun J. Lee, Eric L. Peterson, Rob Phillips, William S. Klug, Paul A. Wiggins posted by 6 people ivrey baker-group sobolevnrm jingzhiwu paulschlesinger kshundyak
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted by 12 people baker-group sobolevnrm jbhiatt lflorez cactus marck i000 structural_bioinformatics McCammon Bioinformatics barry paulschlesinger
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted by 16 people mkotlyar skywalkerus02 dgront nyyu robfsouza apaydin structural_bioinformatics barry coela R.E.A.D Zephyrus baker-group sobolevnrm zwang friendpine paulschlesinger
	The molecular face of lipid rafts in model membranes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 45. (11 November 2008), pp. 17367-17372. by H. Jelger Risselada, Siewert J. Marrink posted by 11 people richardfranzese ARobson Oxford Virology wsjames reister paulschlesinger chiufanlee McCammon barry dimka kshundyak
	Uncovering the rules for proteinâprotein interactions from yeast genomic data [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3752-3757. by Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang posted by 10 people carlk guhjy AbnerCYH baker-group sobolevnrm mariap3636 mstumpf grahamc zwang phoenixzxl
	Thermodynamics of Melittin Binding to Lipid Bilayers. Aggregation/Pore Formation. [My Copy] Biochemistry, Vol. 0, No. ja. (0000) by Gabriela Klocek, Therese Schulthess, Yechiel Shai, Joachim Seelig posted by 5 people willard agrossfield baker-group sobolevnrm carlosjavierna
	Biophysical characterization of intrinsically disordered proteins. [My Copy] Current opinion in structural biology, Vol. 19, No. 1. (21 February 2009), pp. 23-30. by D. Eliezer posted by 7 people sobolevnrm girayenkavi flbarroso laurenm baker-group paulschlesinger viktor21614
	The Influence of 1-Alkanols and External Pressure on the Lateral Pressure Profiles of Lipid Bilayers [My Copy] Biophys. J. (10 October 2008), biophysj.108.142125. by Beate Griepernau, Rainer Bockmann posted by 4 people sunnytov baker-group sobolevnrm paulschlesinger
	Computational evaluation of protein-small molecule binding. [My Copy] Current opinion in structural biology, Vol. 19, No. 1. (20 February 2009), pp. 56-61. by O. Guvench, A. D. MacKerell posted by 8 people sobolevnrm flbarroso csrocha ucbcjbm baker-group phoenixzxl McCammon barry
	Internal coarse-graining of molecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6453-6458. by Jérôme Feret, Vincent Danos, Jean Krivine, Russ Harmer, Walter Fontana posted by 11 people jvb leemond31 superpyrin Scis0000002 reyez trfield baker-group sobolevnrm paulschlesinger jjray kshundyak
	Similarity Measures for Protein Ensembles [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4203. by Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg posted by 12 people anuragsethi klexa apaydin baker-group sobolevnrm gane5h structural_bioinformatics barry McCammon jmccammon reyez biehl
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted by 20 people jfr freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan baker-group sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf zwang friendpine
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted by 64 people pekrau Sergey_gerbek mordiano remoteFuture Yanno Pedro Martinez EvoDevo lab Barcelona aaltenburger marekrud guhjy dolchan frohike operon Orengo Group Journal Picks CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Bioinformatics - CRUK Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom ccsbs wei_tang fenghezi BergmanLab cisevol structural_bioinformatics McCammon barry sdaehne druvus
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted by 13 people anuragsethi skywalkerus02 baker-group sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin structural_bioinformatics McCammon barry
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted by 8 people anuragsethi skywalkerus02 pablocarb structural_bioinformatics McCammon barry baker-group sobolevnrm
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted by 10 people dfdong higueruelo pablocarb nickolay phoenixzxl neils idoerg baker-group sobolevnrm paulschlesinger
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted by 36 people guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer Bioinformatics svozil mmartin jfr MarcoAlvarez baker-group sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi VisionLab kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor
	Ten Simple Rules To Combine Teaching and Research [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (24 April 2009), e1000358. by Quentin Vicens, Philip E. Bourne posted by 32 people danilov Zephyrus Sergey_gerbek jfr rdiaz CulCog mevadg nanonan angelicabtto daforerog Tips on research dipenps guano NIlz coela apaydin jago abellogin yangjustinc silberbauer marekrud lambert72 edws allysonlister dswan dullhunk McCammon barry ulrichs mariopinedakrch baker-group sobolevnrm
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted by 10 people kgutwin balicea grahamc markchen zwang cabbagesofdoom structural_bioinformatics McCammon Bioinformatics barry
	Long-timescale molecular dynamics simulations of protein structure and function. [My Copy] Current opinion in structural biology, Vol. 19, No. 2. (08 April 2009), pp. 120-127. by John L. Klepeis, Kresten Lindorff-Larsen, Ron O. Dror, David E. Shaw posted by 13 people xdeupi agrossfield allmensch bmduggan r2s2 apaydin kiekyon Borelli idoerg baker-group sobolevnrm edws paulschlesinger
	Four stages of a scientific discipline; four types of scientist. [My Copy] Trends in biochemical sciences, Vol. 34, No. 5. (09 May 2009), pp. 217-223. by Alexander M. Shneider posted by 37 people singhsh Sergey_gerbek cyounkin memerman Horduna Gorzomagnificent sfalsharif plosmedicine daforerog Roswell Cancer Crosstalk yyfwuhan CulCog yangjustinc abhishek_tiwari operon brembs ommachi Ryerson U. MMSc marclijour druvus qwermish Centre de Recherches Interdisciplinaires Enro polivares coela BergmanLab cisevol baker-group sobolevnrm McCammon barry reyez silberbauer Zephyrus dullhunk fgibson neils
	Hydration Water Dynamics Near Biological Interfaces† [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4082-4092. by Margaret E. Johnson, Cecile Malardier-Jugroot, Rajesh K. Murarka, Teresa Head-Gordon posted by 8 people Jiang Research Group whitead willard flbarroso Lombardo_7 kvilonen baker-group sobolevnrm
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted by 8 people anuragsethi flbarroso structural_bioinformatics McCammon barry baker-group sobolevnrm higueruelo
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted by 13 people rph dgront OPIG sebk structural_bioinformatics barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted by 9 people skywalkerus02 dimka operon baker-group sobolevnrm structural_bioinformatics McCammon barry bourby
	Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3776-3781. by Sichun Yang, Nilesh K. Banavali, BenoÃ®t Roux posted by 10 people anuragsethi Diego_Prada bmduggan allmensch guhjy baker-group sobolevnrm barry McCammon jmccammon
	Trapping Moving Targets with Small Molecules [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 213-215. by Gregory M. Lee, Charles S. Craik posted by 10 people guhjy nanonan baker-group sobolevnrm structural_bioinformatics McCammon barry pablocarb Fortran friendpine
	Systematic multiscale simulation of membrane protein systems [My Copy] Current Opinion in Structural Biology (09 April 2009) by Gary S. Ayton, Gregory A. Voth posted by 5 people baker-group sobolevnrm McCammon barry paulschlesinger
	Multiscale characterization of protein conformational ensembles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 837-851. by Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi posted by 8 people anuragsethi okapi structural_bioinformatics McCammon barry baker-group sobolevnrm apaydin
	Predicting Protein Function and Binding Profile via Matching of Local Evolutionary and Geometric Surface Patterns [My Copy] Journal of Molecular Biology, Vol. 387, No. 2. (27 March 2009), pp. 451-464. by Yan Y. Tseng, Joseph Dundas, Jie Liang posted by 8 people sobolevnrm pablocarb nickolay structural_bioinformatics McCammon Bioinformatics barry baker-group
	Linear response theory in dihedral angle space for protein structural change upon ligand binding [My Copy] Journal of Computational Chemistry, Vol. 30, No. 16. (2009), pp. 2602-2608. by Satoshi Omori, Sotaro Fuchigami, Mitsunori Ikeguchi, Akinori Kidera posted by 4 people barry baker-group sobolevnrm RamuAnandakrishnan
	Comparison of cholesterol and its direct precursors along the biosynthetic pathway: Effects of cholesterol, desmosterol and 7-dehydrocholesterol on saturated and unsaturated lipid bilayers [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Tomasz Róg, Ilpo Vattulainen, Maurice Jansen, Elina Ikonen, Mikko Karttunen posted by 4 people baker-group sobolevnrm paulschlesinger softsimu
	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000368. by Fran Lewitter, Michael Rebhan posted by 27 people pekrau GustavoLacerda fgibson daforerog zwang natstreet sobolevnrm orzenil kongl Convention on Knowledge Commons jago druvus kiekyon nuin operon aprasad chrisamiller dswan reyez djkt GeeSharpMinor structural_bioinformatics McCammon Bioinformatics barry Journal picks ppgardne
	Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3137-3141. by Franc Avbelj, Robert L. Baldwin posted by 4 people baker-group sobolevnrm paulschlesinger amishp
	Thermodynamically dominant hydration structures of aqueous ions [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195102. by Safir Merchant, D. Asthagiri posted by 7 people afenley mikaellund flbarroso dlimmer agrossfield baker-group sobolevnrm
	Characterizing the resistance generated by a molecular bond as it is forcibly separated [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8818-8823. by L. B. Freund posted by 3 people sobolevnrm bobturner paulschlesinger
	An Introduction to Critical Points for Biophysicists; Observations of Compositional Heterogeneity in Lipid Membranes [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (01 October 2008) by A. Honerkampsmith, S. Veatch, S. Keller posted by 3 people baker-group sobolevnrm paulschlesinger
	Multiscale Modeling of Form and Function [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 208-212. by Adam J. Engler, Patrick O. Humbert, Bernhard Wehrle-Haller, Valerie M. Weaver posted by 6 people edws structural_bioinformatics McCammon barry baker-group sobolevnrm
	Remeasuring the Double Helix [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 446-449. by Rebecca S. Mathew-Fenn, Rhiju Das, Pehr A. Harbury posted by 9 people baker-group sobolevnrm jbhiatt Elena_Zubova melting kshundyak marck moernerlab samjlord
	Mechanism of a prototypical synthetic membrane-active antimicrobial: Efficient hole-punching via interaction with negative intrinsic curvature lipids. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 52. (30 December 2008), pp. 20595-20600. by L. Yang, V. D. Gordon, D. R. Trinkle, et al.N. W. Schmidt, M. A. Davis, C. DeVries, A. Som, J. E. Cronan, G. N. Tew, G. C. Wong posted by 6 people baker-group sobolevnrm paulschlesinger katiehumphry stk kshundyak
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted by 222 people gbouma welliegirl Dentistry suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner Zotero en español jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 Journal picks jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 Health_Informatics jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 Herramientas20 dmaweb bhengeveld jpgrolle wsumthai daforerog Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org INK-SSCI-SCI quianominorleo tux2000 cogs eLearning in Leicester AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn mgh-lcs carlblesius NaCTeM Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley MEHTRadiology dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen Département Hypermédia - Master NET esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz JLab BergmanLab cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag McCammon barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris Poverty Alleviation from Access to Knowledge jago druvus emayorga GeeSharpMinor fgibson structural_bioinformatics chad_davis Roswell Cancer Crosstalk Zephyrus leonardo dullhunk
	How to Get the Most out of Your Curation Effort [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000391. by Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur posted by 21 people daveGerrard Orengo Group Journal Picks CorinYeats abhishek_tiwari daforerog klexa lptolik kiekyon badger_master baker-group sobolevnrm druvus martingerner BergmanLab cisevol Journal picks AlexBateman VGreiff allysonlister fgibson dullhunk
	Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane [My Copy] Proceedings of the National Academy of Sciences (2008) by Yana K. Reshetnyak, Oleg A. Andreev, Michael Segala, Vladislav S. Markin, Donald M. Engelman posted by 4 people baker-group sobolevnrm agrossfield paulschlesinger
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1262-1265. by E. D. Levy, E. Boeri Erba, C. V. Robinson, S. A. Teichmann posted by 13 people robfsouza chica KeatingJClub noraziz chad_davis psique marck paulschlesinger neils jwm zwang faion phoenixzxl
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted by 66 people kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Bioinformatics - CRUK Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks BergmanLab cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard eLearning in Leicester AJCann thegoose dullhunk brianb neils silberbauer daforerog Journal picks ppgardne druvus
	A map of human protein interactions derived from co-expression of human mRNAs and their orthologs [My Copy] Mol Syst Biol, Vol. 4 (15 April 2008) by Arun K. Ramani, Zhihua Li, G. Traver Hart, Mark W. Carlson, Daniel R. Boutz, Edward M. Marcotte posted by 14 people KeatingJClub kgutwin windman83 druvus jeremymiller tmmurali biomcgary phoenixzxl zwang giovanni grahamc ardalby OPIG ptrobajo
	Protein Side-Chain Dynamics and Residual Conformational Entropy [My Copy] Journal of the American Chemical Society, Vol. 131, No. 2. (21 January 2009), pp. 615-622. by Nikola Trbovic, Jae-Hyun Cho, Robert Abel, Richard A. Friesner, Mark Rance, Arthur G. Palmer posted by 6 people bmduggan structural_bioinformatics McCammon barry baker-group sobolevnrm
	Synthetic Gene Networks That Count [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202. by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins posted by 16 people dbikard pyjamashark abhishek_tiwari mjoach myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt jjray dswan
	Interaction of Lipid Membrane with Nanostructured Surfaces [My Copy] Langmuir, Vol. 25, No. 11. (2 June 2009), pp. 6287-6299. by Yuri Roiter, Maryna Ornatska, Aravind R. Rammohan, Jitendra Balakrishnan, David R. Heine, Sergiy Minko posted by 4 people cjryan baker-group sobolevnrm paulschlesinger
	Sending Signals Dynamically [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 198-203. by Robert G. Smock, Lila M. Gierasch posted by 8 people kjell chica pablocarb biomcgary baker-group sobolevnrm renatomilani hsekiguc
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted by 35 people codonusage balabu yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela BergmanLab polivares rpatward lizbiogen jdbowes operon jasontsai absterga jbhiatt jjray kshundyak zwang friendpine
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted by 12 people rabio pavanghatty mijam dgront structural_bioinformatics McCammon Bioinformatics barry baker-group sobolevnrm biehl itmeson
	Electromechanical coupling in the membranes of Shaker-transfected HEK cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6626-6631. by Arthur Beyder, Frederick Sachs posted by 2 people baker-group sobolevnrm
	On the Range of Water Structure Models Compatible with X-ray and Neutron Diffraction Data [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 18. (7 May 2009), pp. 6246-6255. by Kjartan T. Wikfeldt, Mikael Leetmaa, Mathias P. Ljungberg, Anders Nilsson, Lars G. M. Pettersson posted by 5 people qshao willard flbarroso baker-group sobolevnrm
	Inclusion of ionization states of ligands in affinity calculations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 1. (2009), pp. 138-150. by Serena Donnini, Alessandra Villa, Gerrit Groenhof, Alan E. Mark, Rik K. Wierenga, André H. Juffer posted by 8 people flbarroso onufriev McCammon rbaron ibuch baker-group sobolevnrm RamuAnandakrishnan
	Ion channel gates: comparative analysis of energy barriers [My Copy] European Biophysics Journal by Kaihsu Tai, Shozeb Haider, Alessandro Grottesi, Mark Sansom posted by 5 people McCammon jmccammon baker-group sobolevnrm paulschlesinger
	SHARPEN-Systematic Hierarchical Algorithms for Rotamers and Proteins on an Extended Network. [My Copy] Journal of computational chemistry (23 January 2009) by Ilya V V. Loksha, James R R. Maiolo, Cheng W W. Hong, Albert Ng, Christopher D D. Snow posted by 7 people apaydin baker-group sobolevnrm Structural Biology Group TorVergata A_Coletta_Thesis structural_bioinformatics barry
	A method for the analysis of domain movements in large biomolecular complexes [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Guru P. Poornam, Atsushi Matsumoto, Hisashi Ishida, Steven Hayward posted by 6 people structural_bioinformatics McCammon Bioinformatics barry baker-group sobolevnrm
	2D molecular graphics: a flattened world of chemistry and biology [My Copy] Brief Bioinform (30 March 2009), bbp013. by Peng Zhou, Zhicai Shang posted by 9 people mijogiffin Zephyrus nanonan baker-group sobolevnrm dimka structural_bioinformatics McCammon barry
	Computation of Conformational Coupling in Allosteric Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000484. by Brian A. Kidd, David Baker, Wendy E. Thomas posted by 8 people sobolevnrm klexa oteri boris_aguilar bmduggan McCammon barry zwang
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted by 40 people welliegirl Sergey_gerbek cyounkin Tomste Horduna aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField MarcoAlvarez sobolevnrm Bioinformatics - CRUK Stew dbikard jasontsai casutton franklu310 kieran101 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips Journal picks ppgardne fgibson McCammon barry dullhunk
	Beyond the Poisson-Boltzmann Model: Modeling Biomolecule-Water and Water-Water Interactions [My Copy] Physical Review Letters, Vol. 102, No. 8. (2009), 087801. by Patrice Koehl, Henri Orland, Marc Delarue posted by 4 people sobolevnrm onufriev baker-group paulschlesinger
	Nanoscopic description of biomembrane electrostatics: Results of molecular dynamics simulations and fluorescence probing [My Copy] Chemistry and Physics of Lipids (27 May 2009) by Alexander P. Demchenko, Semen O. Yesylevskyy posted by 4 people flbarroso baker-group sobolevnrm paulschlesinger
	Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (14 July 2009), pp. 684-690. by Jianmin Gao, Daryl A. Bosco, Evan T. Powers, Jeffery W. Kelly posted by 4 people sobolevnrm structural_bioinformatics McCammon barry
	Protein folding: lessons learned and new frontiers [My Copy] Phys. Biol., Vol. 6, No. 1. (March 2009), 010301. by Rohit V. Pappu, Ruth Nussinov posted by 5 people barry VGreiff baker-group sobolevnrm viktor21614
	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted by 6 people biblioteca_babel structural_bioinformatics McCammon barry baker-group sobolevnrm
	On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models. [My Copy] Physical chemistry chemical physics : PCCP, Vol. 11, No. 12. (28 March 2009), pp. 1934-1941. by M. Winger, D. Trzesniak, R. Baron, W. F. van Gunsteren posted by 6 people arnaucordomi patvarilly baker-group sobolevnrm mbeeby flbarroso
	Real Lives and White Lies in the Funding of Scientific Research [My Copy] PLoS Biol, Vol. 7, No. 9. (15 September 2009), e1000197. by Peter A. Lawrence posted by 53 people Geknitics Horduna ahmetbakan tsjipko Zephyrus JLab polivares ubcg08l Convention on Knowledge Commons ePortfolio jago Laurentjp pmcarlton nuin Yanno CulCog McCammon barry rodney dmnapolitano Caronte daveGerrard sobolevnrm cyounkin jshigh maren BergmanLab cisevol MurphysLab Khavkin's lab ArtemPankin ifiokoye jclau reyez lilith ngehlenborg eisdur tnhh antonkratz samjlord Torsten_Holmer ommachi rdiaz druvus Borelli pedromts renatomilani Mycology stajich chriswillmott dullhunk Journal picks ppgardne
	Theory of Free Energy and Entropy in Noncovalent Binding [My Copy] Chemical Reviews, Vol. 109, No. 9. (9 September 2009), pp. 4092-4107. by Huan-Xiang Zhou, Michael K. Gilson posted by 10 people McCammon jmccammon Chang group cchang agrossfield anuragsethi sobolevnrm dr_proton qshao paulschlesinger
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted by 28 people mgomes nzm pauldobson cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz jfr ocs cerca ptrobajo carlk zwang BenosLab gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils
	The pKa Values of Acidic and Basic Residues Buried at the Same Internal Location in a Protein Are Governed by Different Factors [My Copy] Journal of Molecular Biology, Vol. 389, No. 1. (29 May 2009), pp. 34-47. by Michael J. Harms, Carlos A. Castañeda, Jamie L. Schlessman, et al.Gloria R. Sue, Daniel G. Isom, Brian R. Cannon, García-Moreno posted by 4 people girayenkavi baker-group sobolevnrm paulschlesinger
	BlockMaster: Partitioning Protein Kinase Structures Using Normal-Mode Analysis† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 26. (2 July 2009), pp. 7528-7534. by Marina Shudler, Masha Y. Niv posted by 5 people carlosjavierna McCammon barry sobolevnrm paulschlesinger
	The Interaction of Monotopic Membrane Enzymes with a Lipid Bilayer: A Coarse-Grained MD Simulation Study [My Copy] Biochemistry, Vol. 0, No. ja. (0000) by Kia Balali-Mood, Peter Bond, Mark Sansom posted by 4 people baker-group sobolevnrm paulschlesinger carlosjavierna
	Lambda-dynamics free energy simulation methods. [My Copy] Journal of computational chemistry, Vol. 30, No. 11. (August 2009), pp. 1692-1700. by J. L. Knight, C. L. Brooks posted by 5 people ibuch klexa agrossfield baker-group sobolevnrm
	3D Pressure Field in Lipid Membranes and Membrane-Protein Complexes [My Copy] Physical Review Letters, Vol. 102, No. 7. (2009) by Samuli O. H. Ollila, Jelger H. Risselada, Martti Louhivuori, Erik Lindahl, Ilpo Vattulainen, Siewert J. Marrink posted by 3 people sobolevnrm baker-group paulschlesinger
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted by 17 people jfr mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff baker-group sobolevnrm Bioinformatics barry svozil
	Classical Simulation of Quantum Energy Flow in Biomolecules [My Copy] Physical Review Letters, Vol. 102, No. 11. (2009), 118301. by Gerhard Stock posted by 4 people biblioteca_babel paulschlesinger baker-group sobolevnrm
	Dynamics of protein-protein encounter: A Langevin equation approach with reaction patches [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Jakob Schluttig, Denitsa Alamanova, Volkhard Helms, Ulrich S. Schwarz posted by 6 people anuragsethi barry baker-group sobolevnrm McCammon jmccammon
	Side-chain recognition and gating in the ribosome exit tunnel [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 43. (28 October 2008), pp. 16549-16554. by Paula M. Petrone, Christopher D. Snow, Del Lucent, Vijay S. Pande posted by 5 people carlosjavierna baker-group sobolevnrm McCammon barry
	Characterizing Structural Transitions Using Localized Free Energy Landscape Analysis [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5525. by Nilesh K. Banavali, Alexander D. Mackerell posted by 4 people McCammon barry baker-group sobolevnrm
	Electronic continuum model for molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 130, No. 8. (2009), 085102. by I. V. Leontyev, A. A. Stuchebrukhov posted by 5 people sobolevnrm baker-group Jiang Research Group whitead dlimmer
	Monte Carlo Simulations of Small Vesicles under Osmotic Pressure [My Copy] Langmuir, Vol. 25, No. 13. (7 July 2009), pp. 7313-7319. by T. Zehl, M. Wahab, H. J. Mögel, P. Schiller posted by 4 people carlosjavierna baker-group sobolevnrm paulschlesinger
	An introduction to scripting in Ruby for biologists. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 221. by Jan Aerts, Andy Law posted by 29 people isimpson kshameer n00c Zephyrus nuin sobolevnrm jago lwaldron apaydin natstreet Bioinformatics - CRUK Stew silberbauer mfenner phoenixzxl renatomilani abhishek_tiwari rschulz Journal picks sjcockell dullhunk druvus neils daforerog fgibson leemond31 brianb Bioinformatics dswan
	CHARMM: The biomolecular simulation program [My Copy] Journal of Computational Chemistry, Vol. 30, No. 10. (30 July 2009), pp. 1545-1614. by B. R. Brooks, C. L. Brooks, A. D. Mackerell, et al.L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus posted by 10 people rodrigofaccioli mmuecke medic0747 flbarroso jrperillaj xavierprat saravan baker-group sobolevnrm dimka
	Understanding mechanisms governing protein-protein interactions from synthetic binding interfaces [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Anthony A. Kossiakoff, Shohei Koide posted by 6 people grahamc structural_bioinformatics McCammon Bioinformatics barry paulschlesinger
	Setting the standard in synthetic biology [My Copy] Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774. by Adam Arkin posted by 10 people abhishek_tiwari Scis0000002 fgibson TobiasAbenius Vincent_Rouilly guhjy marck dbikard grahamc austin
	GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 3. (1 March 2008), pp. 435-447. by Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl posted by 25 people softsimu parnell rabio oteri krapnik robertvacha rodrigofaccioli pavanghatty janneb ZhangYinhe okapi flbarroso marceavi Structural Biology Group TorVergata A_Coletta_Thesis choonpeng Lombardo_7 jwm daevans mmuecke sobolevnrm baker-group r2s2 middledomain loison
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted by 30 people daforerog hzoltan idonaldson kshameer operon guhjy druvus n00c dnewburger djkt mmartin baker-group sobolevnrm jfr psique BergmanLab cisevol GeeSharpMinor neils Bioinformatics dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley
	Role of Cardiolipins in the Inner Mitochondrial Membrane: Insight Gained through Atom-Scale Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 11. (19 March 2009), pp. 3413-3422. by Tomasz Róg, Hector Martinez-Seara, Nana Munck, Matej Orešič, Mikko Karttunen, Ilpo Vattulainen posted by 4 people baker-group sobolevnrm paulschlesinger carlosjavierna
	Solubility and Molecular Conformations of n-Alkane Chains in Water [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 18. (7 May 2009), pp. 6405-6414. by Andrew L. Ferguson, Pablo G. Debenedetti, Athanassios Z. Panagiotopoulos posted by 4 people willard flbarroso baker-group sobolevnrm
	Programming cells by multiplex genome engineering and accelerated evolution [My Copy] Nature, Vol. 460, No. 7257. (26 July 2009), pp. 894-898. by Harris H. Wang, Farren J. Isaacs, Peter A. Carr, et al.Zachary Z. Sun, George Xu, Craig R. Forest, George M. Church posted by 16 people abhishek_tiwari TorstenWaldminghaus jdoconnell dswan Annab badi druvus dayjm pkonings Journal picks zwang phoenixzxl biomcgary djkt Synthetic Biology dbikard
	From Franklin to Today: Toward a Molecular Level Understanding of Bonding and Adsorption at the Oil−Water Interface† [My Copy] The Journal of Physical Chemistry C, Vol. 113, No. 4. (29 January 2009), pp. 1171-1188. by Cathryn L. Mcfearin, Daniel K. Beaman, Fred G. Moore, Geraldine L. Richmond posted by 4 people flbarroso baker-group sobolevnrm willard
	Elucidating the Inhibition Mechanism of HIV-1 Non-Nucleoside Reverse Transcriptase Inhibitors through Multicopy Molecular Dynamics Simulations [My Copy] Journal of Molecular Biology, Vol. 388, No. 3. (08 May 2009), pp. 644-658. by Anthony Ivetac, J. Andrew Mccammon posted by 4 people bmduggan baker-group sobolevnrm paulschlesinger
	The role of lipid composition for insertion and stabilization of amino acids in membranes [My Copy] The Journal of Chemical Physics, Vol. 130, No. 18. (2009), 185101. by Anna C. V. Johansson, Erik Lindahl posted by 4 people agrossfield baker-group sobolevnrm paulschlesinger