ksha's Top Recommendations

These recommendations were last updated 55 days ago.

	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. 39, No. 3. (04 February 2007), pp. 311-318. by Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, et al.Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren posted by 16 people rsaito tonamswish hagechouchin443 suizifish absterga raylim kengg djkt mgaldzic olympos skoch3 epigenetics CHIP Plantandetc caseybrown inesdesantiago
	Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. [My Copy] Nature, Vol. 448, No. 7153. (2 August 2007), pp. 553-560. by Tarjei S. Mikkelsen, Manching Ku, David B. Jaffe, et al.Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung K. Kim, Richard P. Koche, William Lee, Eric Mendenhall, Aisling O'Donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S. Lander, Bradley E. Bernstein posted by 21 people hkuhn RyuOgawa stubrown ewilban1 tonamswish gdb guhjy brant dchughes vega kengg vplagnol olympos epigenetics bioyang cabbagezs EisenLab rschulz slevy03 jasonflannick inesdesantiago
	Combinatorial patterns of histone acetylations and methylations in the human genome [My Copy] Nature Genetics, Vol. 40, No. 7. (15 June 2008), pp. 897-903. by Zhibin Wang, Chongzhi Zang, Jeffrey A. Rosenfeld, et al.Dustin E. Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q. Zhang, Keji Zhao posted by 19 people rsaito akakak hagechouchin443 RyuOgawa suizifish tonamswish Epigenetics sebastien_vigneau gderwin oelemento raylim coela jernst bpcusack kambiz caseybrown djkt kengg inesdesantiago
	Genome-wide transcription and the implications for genomic organization [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 413-423. by Philipp Kapranov, Aarron T. Willingham, Thomas R. Gingeras posted by 29 people Jporci bartjacobse bertelsen daforerog coela hagechouchin443 emptyhb pengchy guhjy balicea xico dchughes kengg sebastien_vigneau zwang ajgentles Ema asddd hanansh antonkratz Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling vietanh0 maximilianh GeeSharpMinor inesdesantiago
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted by 29 people bsamal hzoltan Neuroblastoma fpattyn stubrown isimpson SIMR bioinformatics huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg BenosLab bais idonaldson
	Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing [My Copy] Nature Methods, Vol. 4, No. 8. (11 June 2007), pp. 651-657. by Gordon Robertson, Martin Hirst, Matthew Bainbridge, et al.Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L. Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones posted by 16 people bedo absterga samanthacooper stubrown ewilban1 fpattyn polivares caseybrown guhjy vega kengg ghattem Plantandetc slevy03 dquest raiyar
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted by 22 people hzoltan stubrown guhjy gdb tonamswish KCL & UCL Bioinformatics ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz SIMR bioinformatics ghattem
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 48 people ongenetics cajunsushi davidmam manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted by 15 people hzoltan hagechouchin443 ashraya stubrown cassj guhjy humburg ewilban1 gdb inesdesantiago fenghezi SIMR bioinformatics ghattem BergmanLab polivares
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted by 30 people oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci Bioinformatics microRNA Marcotte_Lab blobbybirdman UH - Computational Biology caseybrown emptyhb Myxo group dquest
	A genomic code for nucleosome positioning [My Copy] Nature, Vol. 442, No. 7104. (17 August 2006), pp. 772-778. by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, et al.Annchristine Thastrom, Yair Field, Irene K. Moore, Ji-Ping Z. Wang, Jonathan Widom posted by 30 people TRHvidsten hagechouchin443 natstreet dakelley kentsis aalibes alokm marcius indigoviolet dchughes cconboy neveaire kengg johncumbers joshuashen joepickrell GustavoLacerda Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID BioinfoCIPF SGU-CIPF Plantandetc Genetics-of-Gambling rschulz inesdesantiago sonjadaniela
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted by 47 people provero rsaito BergmanLab daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre Mycology stajich bpcusack jbhiatt djkt structural_bioinformatics dhlbh friendpine RockmanLab EisenLab cis-regulatory-evolution dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted by 26 people hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony RockmanLab cis-regulatory-evolution dpollard caseybrown biomcgary xingxu idonaldson djkt
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted by 28 people torfinnnome hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz SIMR bioinformatics mcm polivares gdb ghattem yadadi djkt Mycology stajich mdperry fpattyn bcondon idonaldson caseybrown kengg
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted by 33 people provero hzoltan jwfoley rsaito greg Chinnaiyan Lab mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga JLab cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada
	Dynamic Regulation of Nucleosome Positioning in the Human Genome [My Copy] Cell, Vol. 132, No. 5. (07 March 2008), pp. 887-898. by D. Schones, K. Cui, S. Cuddapah, et al.T. Roh, A. Barski, Z. Wang, G. Wei, K. Zhao posted by 19 people antonkratz rsaito JLab polivares megraw hagechouchin443 inesdesantiago coela natstreet aalibes dchughes sleepingcell idonaldson oelemento sameetmehta mikaelhuss vega kengg sonjadaniela
	Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117. by Xi Chen, Han Xu, Ping Yuan, et al.Fang Fang, Mikael Huss, Vinsensius B. Vega, Eleanor Wong, Yuriy L. Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han H. Loh, Hock Chuan C. Yeo, Zhen Xuan X. Yeo, Vipin Narang, Kunde Ramamoorthy R. Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin K. Sung, Neil D. Clarke, Chia-Lin L. Wei, Huck-Hui H. Ng posted by 15 people isimpson shikin Epigenetics CTCF sebastien_vigneau cassj rschulz FJ fhalbrit djkt jjray inesdesantiago caseybrown kengg gdb
	The landscape of histone modifications across 1% of the human genome in five human cell lines [My Copy] Genome Research, Vol. 17, No. 6. (1 June 2007), pp. 691-707. by Christoph M. Koch, Robert M. Andrews, Paul Flicek, et al.Shane C. Dillon, UlaÅ KaraÃ¶z, Gayle K. Clelland, Sarah Wilcox, David M. Beare, Joanna C. Fowler, Phillippe Couttet, Keith D. James, Gregory C. Lefebvre, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Pawandeep Dhami, Cordelia F. Langford, Zhiping Weng, Ewan Birney, Nigel P. Carter, David Vetrie, Ian Dunham posted by 10 people tonamswish guhjy djkt olympos ghattem epigenetics Bioinformatics maximilianh xingxu jasonflannick
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted by 21 people hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish JLab BergmanLab guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad
	The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. [My Copy] Nature genetics, Vol. 38, No. 4. (05 April 2006), pp. 431-440. by Yuin-Han H. Loh, Qiang Wu, Joon-Lin L. Chew, et al.Vinsensius B. Vega, Weiwei Zhang, Xi Chen, Guillaume Bourque, Joshy George, Bernard Leong, Jun Liu, Kee-Yew Y. Wong, Ken W. Sung, Charlie W. Lee, Xiao-Dong D. Zhao, Kuo-Ping P. Chiu, Leonard Lipovich, Vladimir A. Kuznetsov, Paul Robson, Lawrence W. Stanton, Chia-Lin L. Wei, Yijun Ruan, Bing Lim, Huck-Hui H. Ng posted by 12 people isimpson inesdesantiago tonamswish guhjy cmmorel gpalidwor brixtonmc vega eukfn mikaelhuss idonaldson tdmckee
	Histone modifications at human enhancers reflect global cell-type-specific gene expression [My Copy] Nature, Vol. 459, No. 7243. (18 March 2009), pp. 108-112. by Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, et al.Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren posted by 20 people rpatward akakak suizifish RyuOgawa inesdesantiago gdb djkt tonamswish t08681mn akundaje leliavski scjparker fenghezi TRHvidsten humburg frohike idonaldson Epigenetics CTCF sebastien_vigneau
	Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 537. by Yong Zhang, Hyunjin Shin, Jun Song, Ying Lei, X. Shirley Liu posted by 7 people antonkratz hagechouchin443 stubrown inesdesantiago polivares idonaldson caseybrown
	microRNAs as oncogenes and tumor suppressors. [My Copy] Developmental biology, Vol. 302, No. 1. (1 February 2007), pp. 1-12. by Baohong Zhang, Xiaoping Pan, George P. Cobb, Todd A. Anderson posted by 10 people shazo giovenko guhjy jfr tardigrade dchughes nicg G4ID Genetics-of-Gambling maralena
	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. [My Copy] PLoS genetics, Vol. 4, No. 7. (25 July 2008), e1000138. by Yutao Fu, Manisha Sinha, Craig L. Peterson, Zhiping Weng posted by 12 people suizifish gderwin CTCF sebastien_vigneau madreach JLab polivares BergmanLab cisevol djkt clearbluespring inesdesantiago
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted by 32 people guhjy akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez Journal picks qayub fenghezi tonamswish Orengo Group Journal Picks robertrentzsch JLab BergmanLab polivares idonaldson rschulz CTCF Chromatin cvaldes danmaclean
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted by 9 people darian mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt epigenetics
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted by 15 people bsamal jfr tonamswish rdiaz fpattyn Journal picks jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted by 21 people bedo hzoltan fpattyn gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley SIMR bioinformatics ghattem abizar polivares idonaldson WanderingAengus guhjy
	CpG Island Mapping by Epigenome Prediction [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (8 June 2007), e110. by Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer posted by 12 people hagechouchin443 iris42 aprasad suizifish bpcusack kaarsinogen sebastien_vigneau zwang oelemento fpattyn rschulz inesdesantiago
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1. (January 2009), pp. 24-32. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted by 15 people aprickett suizifish gdb fenghezi clearbluespring rschulz xingxu CTCF sebastien_vigneau cassj caseybrown polivares inesdesantiago oelemento maximilianh
	Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. [My Copy] Nature, Vol. 453, No. 7197. (12 June 2008), pp. 948-951. by L. Guelen, L. Pagie, E. Brasset, et al.W. Meuleman, M. B. Faza, W. Talhout, B. H. Eussen, A. de Klein, L. Wessels, W. de Laat, B. van Steensel posted by 10 people JLab polivares CTCF sebastien_vigneau daveGerrard absterga caseybrown inesdesantiago rschulz vega
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted by 17 people guhjy gdb fenghezi tonamswish emptyhb caseybrown siebert sebastien_vigneau inesdesantiago djkt jjray strands Glires lp2 sandersl diaz0058 jbhiatt
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted by 12 people darian gdb Bioinformatics - CRUK slv23 inesdesantiago ewilban1 floatingpoint WanderingAengus magusina SIMR bioinformatics ghattem caseybrown
	Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions. [My Copy] Genome research, Vol. 17, No. 6. (1 June 2007), pp. 787-797. by Zhengdong D. Zhang, Alberto Paccanaro, Yutao Fu, et al.Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B. Gerstein posted by 15 people Paccanaro Lab paccanarolab aprasad ana Borelli kengg ghattem epigenetics structural_bioinformatics Bioinformatics Plantandetc blobbybirdman UH - Computational Biology inesdesantiago jasonflannick
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted by 11 people tonamswish talponer ewilban1 polivares guhjy mcm Eroslavochka inesdesantiago mdperry sebastien_vigneau idonaldson
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted by 11 people Bioinformatics - CRUK Stew tonamswish stubrown inesdesantiago ewilban1 guhjy Chinnaiyan Lab mkiyer humburg rschulz
	High-throughput mapping of the chromatin structure of human promoters [My Copy] Nat Biotech, Vol. 25, No. 2. (February 2007), pp. 244-248. by Fatih Ozsolak, Jun S. Song, Shirley X. Liu, David E. Fisher posted by 11 people hagechouchin443 emptyhb jimeet guhjy aalibes jfr dchughes vega ccr G4ID Genetics-of-Gambling
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted by 23 people manduca hzoltan jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Large-scale identification of novel transcripts in the human genome. [My Copy] Genome research, Vol. 17, No. 3. (31 March 2007), pp. 287-292. by B. A. Peters, B. St Croix, T. Sjöblom, et al.J. M. Cummins, N. Silliman, J. Ptak, S. Saha, K. W. Kinzler, C. Hatzis, V. E. Velculescu posted by 9 people guhjy jfr dchughes djkt olympos grahamc G4ID Genetics-of-Gambling bpcusack
	Noncoding RNAs and Gene Silencing [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 763-776. by Mikel Zaratiegui, Danielle V. Irvine, Robert A. Martienssen posted by 9 people heliopais jiayi369 guhjy alexg dchughes sebastien_vigneau N0131826 G4ID Genetics-of-Gambling
	Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns [My Copy] Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 74-81. by Tae-Young Roh, Gang Wei, Catherine M. Farrell, Keji Zhao posted by 4 people dchughes epigenetics G4ID Genetics-of-Gambling
	Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts [My Copy] BMC Bioinformatics, Vol. 8 (26 June 2007), 221. by Joern Toedling, Oleg Sklyar, Wolfgang Huber posted by 9 people TheresaNiederberger rschulz guhjy jfr ghattem hpaces caseybrown inesdesantiago bryankr
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 53 people sotacam CPI UU AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding [My Copy] Genome Research, Vol. 18, No. 12. (3 December 2008), pp. 1906-1917. by A. Gordon Robertson, Mikhail Bilenky, Angela Tam, et al.Yongjun Zhao, Thomas Zeng, Nina Thiessen, Timothee Cezard, Anthony P. Fejes, Elizabeth D. Wederell, Rebecca Cullum, Ghia Euskirchen, Martin Krzywinski, Inanc Birol, Michael Snyder, Pamela A. Hoodless, Martin Hirst, Marco A. Marra, Steven J. M. Jones posted by 9 people tonamswish humburg gdb ewilban1 natstreet raylim maximilianh jernst cpreviti
	Origin of phenotypes: genes and transcripts. [My Copy] Genome research, Vol. 17, No. 6. (June 2007), pp. 682-690. by T. R. Gingeras posted by 15 people inesdesantiago klo guhjy balicea xico dchughes michC ghattem Garamonfok Jporci Bioinformatics WetBiology G4ID Genetics-of-Gambling bertelsen
	Automated Querying of Genome Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1. by Peter Schattner posted by 13 people natstreet bertelsen urgi daforerog polivares giovenko inesdesantiago druvus BergmanLab cisevol guhjy jfr Ayest
	Chd1 regulates open chromatin and pluripotency of embryonic stem cells [My Copy] Nature, Vol. 460, No. 7257. (08 July 2009), pp. 863-868. by Alexandre Gaspar-Maia, Adi Alajem, Fanny Polesso, et al.Rupa Sridharan, Mike J. Mason, Amy Heidersbach, JoÃ£o Ramalho-Santos, Michael T. McManus, Kathrin Plath, Eran Meshorer, Miguel Ramalho-Santos posted by 5 people inesdesantiago tonamswish absterga Journal picks leliavski
	Blue native polyacrylamide gel electrophoresis (BN-PAGE) for the identification and analysis of multiprotein complexes. [My Copy] Sci STKE, Vol. 2006, No. 345. (24 July 2006) by M. Swamy, G. M. Siegers, S. Minguet, B. Wollscheid, W. W. Schamel posted by 6 people guhjy stevanspringer dchughes FAB-lab G4ID Genetics-of-Gambling
	Uniform amplification of multiple DNAs by emulsion PCR [My Copy] Biochemical and Biophysical Research Communications, Vol. 352, No. 2. (12 January 2007), pp. 323-328. by Machiko Hori, Hajime Fukano, Yosuke Suzuki posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling
	Genome-wide analysis of mammalian promoter architecture and evolution [My Copy] Nature Genetics In Nat Genet, Vol. 38, No. 6. (28 April 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. M. Semple, Martin S. Taylor, Par G. Engstrom, Martin C. Frith, Alistair R. R. Forrest, Wynand B. Alkema, Sin L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted by 25 people mamitamura rsaito guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 nklee djkt jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao G4ID EBI-regulation Genetics-of-Gambling cisevol cis-regulatory-evolution eviledv gjuggler jasonflannick
	A Mouse for All Reasons [My Copy] Cell, Vol. 128, No. 1. (12 January 2007), pp. 9-13. by The posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling
	Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. [My Copy] Molecular cell, Vol. 25, No. 1. (12 January 2007), pp. 15-30. by Alexander J. Ruthenburg, C. David Allis, Joanna Wysocka posted by 6 people hkuhn guhjy dchughes Anders G4ID Genetics-of-Gambling
	Dynamic Regulation of Histone Lysine Methylation by Demethylases [My Copy] Molecular Cell, Vol. 25, No. 1. (12 January 2007), pp. 1-14. by Y. Shi, J. Whetstine posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted by 40 people urgi agbiotec lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton BergmanLab polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon SIMR bioinformatics ghattem n00c Bioinformatics danmaclean Journal picks ppgardne nuin rschulz natstreet druvus humburg
	A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells [My Copy] Cell, Vol. 125, No. 2. (21 April 2006), pp. 315-326. by B. Bernstein, T. Mikkelsen, X. Xie, et al.M. Kamal, D. Huebert, J. Cuff, B. Fry, A. Meissner, M. Wernig, K. Plath posted by 6 people humburg gderwin inesdesantiago tuck olympos jasonflannick
	The antisense transcriptomes of human cells. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1855-1857. by Yiping He, Bert Vogelstein, Victor E. Velculescu, Nickolas Papadopoulos, Kenneth W. Kinzler posted by 23 people rsaito guhjy gdb maximilianh xingxu hagechouchin443 caseybrown jfr fhalbrit inesdesantiago Koch_Lab skoch3 Roswell Cancer Crosstalk Zephyrus djkt strands balicea shikin coela ealloza diaz0058 gfliustu jbhiatt
	Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 4. (9 August 2009), pp. 398-408. by Daniel A. Gilchrist, David C. Fargo, Karen Adelman posted by 6 people fpattyn ewilban1 guhjy inesdesantiago sebastien_vigneau idonaldson
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted by 42 people hzoltan operon n00c kinestetika mtagaya iSEEM jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani moernerlab samjlord Bioinformatics - CRUK Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 51 people icecrown natstreet provero psique darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by ENCODE Project Consortium, Ewan Birney, John A. Stamatoyannopoulos, et al.Anindya Dutta, Roderic Guigó, Thomas R. Gingeras, Elliott H. Margulies, Zhiping Weng, Michael Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christoph M. Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A. Greenbaum, Robert M. Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, Nigel P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D. James, Brett E. Johnson, Ericka M. Johnson, Tristan T. Frum, Elizabeth R. Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C. Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William S. Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S. Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C. Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K. G. Srinivasan, Wing-Kin K. Sung, Hong Sain S. Ooi, Kuo Ping P. Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L. Tress, Alfonso Valencia, Siew Woh W. Choo, Chiou Yu Y. Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G. Clark, James B. Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S. Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M. Myers, Jane Rogers, Peter F. Stadler, Todd M. Lowe, Chia-Lin L. Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E. Antonarakis, Yutao Fu, Eric D. Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Gregory M. Cooper, George Asimenos, Colin N. Dewey, Minmei Hou, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R. Zhang, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D. Trinklein, Zhengdong D. Zhang, Leah Barrera, Rhona Stuart, David C. King, Adam Ameur, Stefan Enroth, Mark C. Bieda, Jonghwan Kim, Akshay A. Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B. Vega, Charlie W. Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J. Oberley, David Inman, Michael A. Singer, Todd A. Richmond, Kyle J. Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Cordelia F. Langford, David A. Nix, Ghia Euskirchen, Stephen Hartman, Alexander E. Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon H. Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K. Glass, M. Geoff Rosenfeld, Shelley Force F. Aldred, Sara J. Cooper, Anason Halees, Jane M. Lin, Hennady P. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yong Yu, Yijun Ruan, Vishwanath R. Iyer, Roland D. Green, Claes Wadelius, Peggy J. Farnham, Bing Ren, Rachel A. Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S. Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M. Kuhn, Donna Karolchik, Lluis Armengol, Christine P. Bird, Paul I. de Bakker, Andrew D. Kern, Nuria Lopez-Bigas, Joel D. Martin, Barbara E. Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B. Hallgrímsdóttir, Julian Huppert, Michael C. Zody, Gonçalo R. Abecasis, Xavier Estivill, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J. de Jong posted by 28 people bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr chad_davis kengg olympos Bioinformatics blobbybirdman shikin UH - Computational Biology fpattyn yevishere elfar eskay
	Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. [My Copy] PLoS biology, Vol. 7, No. 1. (13 January 2009), e1000013. by Bernd Schuettengruber, Mythily Ganapathi, Benjamin Leblanc, et al.Manuela Portoso, Rami Jaschek, Bas Tolhuis, Maarten van Lohuizen, Amos Tanay, Giacomo Cavalli posted by 7 people emptyhb daveGerrard BergmanLab cisevol djkt sebastien_vigneau inesdesantiago
	Shifting paradigms in Hedgehog signaling [My Copy] Current Opinion in Cell Biology In Cell regulation, Vol. 19, No. 2. (April 2007), pp. 159-165. by Yu Wang, Andrew P. Mcmahon, Benjamin L. Allen posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling
	Tiny RNAs associated with transcription start sites in animals. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 572-578. by Ryan J. Taft, Evgeny A. Glazov, Nicole Cloonan, et al.Cas Simons, Stuart Stephen, Geoffrey J. Faulkner, Timo Lassmann, Alistair R. Forrest, Sean M. Grimmond, Kate Schroder, Katharine Irvine, Takahiro Arakawa, Mari Nakamura, Atsutaka Kubosaki, Kengo Hayashida, Chika Kawazu, Mitsuyoshi Murata, Hiromi Nishiyori, Shiro Fukuda, Jun Kawai, Carsten O. Daub, David A. Hume, Harukazu Suzuki, Valerio Orlando, Piero Carninci, Yoshihide Hayashizaki, John S. Mattick posted by 16 people hzoltan inesdesantiago guhjy jfr gdb xingxu fpattyn galka8_diploma tonamswish antonkratz mtagaya fenghezi ilyashl jbhiatt TRHvidsten natstreet
	H2A.Z contributes to the unique 3D structure of the centromere. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 2. (9 January 2007), pp. 525-530. by I. K. Greaves, D. Rangasamy, P. Ridgway, D. J. Tremethick posted by 3 people dchughes G4ID Genetics-of-Gambling
	High-Resolution Mapping and Characterization of Open Chromatin across the Genome. [My Copy] Cell, Vol. 132, No. 2. (25 January 2008), pp. 311-322. by A. P. Boyle, S. Davis, H. P. Shulha, et al.P. Meltzer, E. H. Margulies, Z. Weng, T. S. Furey, G. E. Crawford posted by 9 people athma inesdesantiago raylim Bioinformatics - CRUK Stew Eroslavochka djkt bootsy aprasad
	Genomic location analysis by ChIP-Seq [My Copy] Journal of Cellular Biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 11-18. by Artem Barski, Keji Zhao posted by 10 people Vincent_Rouilly stubrown guhjy hagechouchin443 tonamswish humburg ewilban1 talponer cassj polivares
	What is a gene, post-ENCODE? History and updated definition [My Copy] Genome Research, Vol. 17, No. 6. (June 2007), pp. 669-681. by Mark B. Gerstein, Can Bruce, Joel S. Rozowsky, et al.Deyou Zheng, Jiang Du, Jan O. Korbel, Olof Emanuelsson, Zhengdong D. Zhang, Sherman Weissman, Michael Snyder posted by 43 people idoerg Zephyrus daforerog daveGerrard Yanno inesdesantiago kentz ddcttrl bertelsen tmarscha thegoose2 burak guhjy carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Bioinformatics EisenLab G4ID Genetics-of-Gambling Minty hpaces tharris altotor mjoach
	Differential chromatin marking of introns and expressed exons by H3K36me3. [My Copy] Nature genetics, Vol. 41, No. 3. (1 March 2009), pp. 376-381. by Paulina Kolasinska-Zwierz, Thomas Down, Isabel Latorre, Tao Liu, X. Shirley Liu, Julie Ahringer posted by 10 people RockmanLab dpollard bpcusack inesdesantiago absterga fenghezi Dulcinea dchughes djkt WanderingAengus
	Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation [My Copy] Nat Meth, Vol. 2, No. 2. (09 February 2005), pp. 105-111. by Patrick Ng, Chia-Lin Wei, Wing-Kin Sung, et al.Kuo P. Chiu, Leonard Lipovich, Chin C. Ang, Sanjay Gupta, Atif Shahab, Azmi Ridwan, Chee H. Wong, Edison T. Liu, Yijun Ruan posted by 5 people jbhiatt guhjy kengg olympos Plantandetc
	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 553-562. posted by 19 people samubernard mamitamura thegoose schwartzjmc rdiaz rsaito guhjy hagechouchin443 gdb tonamswish burak YukaH coela mtagaya bertelsen xingxu TRHvidsten renatomilani antonkratz
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted by 16 people Vincent_Rouilly Bioinformatics tonamswish dswan fenghezi inesdesantiago idonaldson JLab BergmanLab polivares mkiyer druvus Mycology stajich humburg rschulz
	Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1845-1848. by Leighton J. Core, Joshua J. Waterfall, John T. Lis posted by 15 people hagechouchin443 gdb caseybrown sebastien_vigneau bpcusack inesdesantiago Koch_Lab skoch3 djkt strands Glires lp2 sandersl diaz0058 jbhiatt
	Computational epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted by 20 people operon iris42 pawelsobko SIMR bioinformatics huali suizifish mmartin sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs Bioinformatics barriot Ema Thomasah guhjy
	hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes [My Copy] Genomics, Vol. 89, No. 3. (March 2007), pp. 307-315. by Philippe Lamesch, Ning Li, Stuart Milstein, et al.Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart Mclaren, Amelie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling
	Case-control studies in the genomic era: a clinician's guide [My Copy] The Lancet Neurology, Vol. 5, No. 8. (August 2006), pp. 701-707. by Daniel G. Healy posted by 5 people daforerog guhjy dchughes G4ID Genetics-of-Gambling
	Intrinsic variability of gene expression encoded in nucleosome positioning sequences. [My Copy] Nature genetics (1 March 2009) by Jung Kyoon K. Choi, Young-Joon J. Kim posted by 11 people hagechouchin443 TRHvidsten athma siebert absterga shikin inesdesantiago jjray fenghezi djkt provero
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 43 people claire_jubin urgi seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	GeneTrack - a genomic data processing and visualization framework [My Copy] Bioinformatics, Vol. 24, No. 10. (3 April 2008), pp. btn119-1306. by Istvan Albert, Shinichiro Wachi, Cizhong Jiang, B. Franklin Pugh posted by 8 people oannes ewilban1 tonamswish cassj zhouyu wisdom_love guhjy inesdesantiago
	An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 1049-1061. by J. Kim posted by 8 people balabu tonamswish shikin tmmurali maralena guhjy kengg inesdesantiago
	Nucleosome positioning and gene regulation: advances through genomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 3. (01 March 2009), pp. 161-172. by Cizhong Jiang, B. Franklin Pugh posted by 15 people tonamswish hagechouchin443 humburg talponer fenghezi inesdesantiago rpatward timflutre nilsbecker siebert aalibes cube_and_beyond idonaldson WanderingAengus provero
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted by 45 people bsamal zufar CUBES hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Deciphering the combinatorial histone code [My Copy] Nature Methods, Vol. 4, No. 6., pp. 480-481. by Joshua M. Gilmore, Michael P. Washburn posted by 9 people guhjy dchughes sebastien_vigneau olympos epigenetics lp2 Bioinformatics G4ID Genetics-of-Gambling
	MicroRNA-125b is a novel negative regulator of p53. [My Copy] Genes & development, Vol. 23, No. 7. (1 April 2009), pp. 862-876. by Minh T. Le, Cathleen Teh, Ng Shyh-Chang, et al.Huangming Xie, Beiyan Zhou, Vladimir Korzh, Harvey F. Lodish, Bing Lim posted by 7 people guhjy zhlei microRNA tonamswish ericsuh valeriehilgers inesdesantiago
	Two strategies for gene regulation by promoter nucleosomes [My Copy] Genome Research, Vol. 18, No. 7. (30 July 2008), pp. 1084-1091. by Itay Tirosh, Naama Barkai posted by 12 people hagechouchin443 tonamswish athma emptyhb vega nklee roys fpattyn djkt dchughes aalibes siebert
	Rethinking some mechanisms invoked to explain translational regulation in eukaryotes [My Copy] Gene, Vol. In Press, Corrected Proof by Marilyn Kozak posted by 6 people bpcusack guhjy eckart_bindewald dchughes G4ID Genetics-of-Gambling
	Human-specific insertions and deletions inferred from mammalian genome sequences [My Copy] Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 16-22. by Feng-Chi Chen, Chueng-Jong Chen, Wen-Hsiung Li, Trees-Juen Chuang posted by 5 people dchughes olympos G4ID Genetics-of-Gambling caseybrown
	Defining an epigenetic code [My Copy] Nature Cell Biology, Vol. 9, No. 1., pp. 2-6. by Bryan M. Turner posted by 5 people dchughes Anders G4ID Genetics-of-Gambling inesdesantiago
	The relationship between DNA replication and human genome organization [My Copy] Mol Biol Evol (6 January 2009), msn303. by Anamaria Necsulea, Claire Guillet, Jean-Charles Cadoret, Marie-Noelle Prioleau, Laurent Duret posted by 7 people BergmanLab daveGerrard maximilianh inesdesantiago djkt JLab cisevol
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted by 7 people darian sebastien_vigneau ewilban1 guhjy magusina inesdesantiago djkt
	Core transcriptional regulatory circuitry in human embryonic stem cells. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956. by Laurie A. Boyer, Tong Ihn I. Lee, Megan F. Cole, et al.Sarah E. Johnstone, Stuart S. Levine, Jacob P. Zucker, Matthew G. Guenther, Roshan M. Kumar, Heather L. Murray, Richard G. Jenner, David K. Gifford, Douglas A. Melton, Rudolf Jaenisch, Richard A. Young posted by 15 people jodavila rklancer kentsis tardigrade balicea tabu cconboy koller Stew faisalm mikaelhuss tdmckee brant dquest kengg
	Histone acetyltransferase complexes: one size doesn't fit all [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 4., pp. 284-295. by Kenneth K. Lee, Jerry L. Workman posted by 5 people aprickett guhjy dchughes G4ID Genetics-of-Gambling
	Regulation of histone methylation by demethylimination and demethylation [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 4. (07 March 2007), pp. 307-318. by Robert J. Klose, Yi Zhang posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted by 11 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb caseybrown
	Normalization and experimental design for ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (25 June 2007), 219. by Shouyong Peng, Artyom A. Alekseyenko, Erica Larschan, Mitzi I. Kuroda, Peter J. Park posted by 10 people rschulz siebert guhjy kengg Stew EisenLab Plantandetc yevishere caseybrown baldigroup
	Phosphoproteomic approaches to elucidate cellular signaling networks. [My Copy] Curr Opin Biotechnol (26 June 2006) by Katrin Schmelzle, Forest M M. White posted by 7 people guhjy dchughes lhonigberg cdppublications G4ID CDP Genetics-of-Gambling
	Enhancement of soluble protein expression through the use of fusion tags [My Copy] Current Opinion in Biotechnology In Protein technologies, Vol. 17, No. 4. (August 2006), pp. 353-358. by D. Esposito, D. Chatterjee posted by 5 people ts3435 guhjy dchughes G4ID Genetics-of-Gambling
	Genome-wide approaches to studying chromatin modifications. [My Copy] Nature reviews. Genetics, Vol. 9, No. 3. (March 2008), pp. 179-191. by Dustin E. Schones, Keji Zhao posted by 16 people ewilban1 clearbluespring athma hkuhn geniac epigenetics inesdesantiago tmmurali dchughes vega zwang cabbagezs idonaldson faion bpcusack guhjy
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature In Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted by 25 people cajunsushi hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Roswell Cancer Crosstalk Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar
	Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions [My Copy] Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 104-115. by Christian Lanctot, Thierry Cheutin, Marion Cremer, Giacomo Cavalli, Thomas Cremer posted by 11 people dchughes emilyhare margaritis tenpils massivemayhem mdimon EisenLab G4ID Genetics-of-Gambling echinotrix inesdesantiago
	Signature-tagged mutagenesis: barcoding mutants for genome-wide screens [My Copy] Nature Reviews Genetics, Vol. 7, No. 12., pp. 929-939. by Piotr Mazurkiewicz, Christoph M. Tang, Charles Boone, David W. Holden posted by 4 people guhjy dchughes G4ID Genetics-of-Gambling