maryee's Top Recommendations

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	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 85 people 8_01 suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted by 24 people phoenixzxl ruichu bertelsen bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards kdl Bioinformatics Evangelia kallberg isimpson carlk srp33 frohike
	Functional organization of the yeast proteome by systematic analysis of protein complexes [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147. by Anne-Claude Gavin, Markus Bosche, Roland Krause, et al.Paola Grandi, Martina Marzioch, Andreas Bauer, Jorg Schultz, Jens M. Rick, Anne-Marie Michon, Cristina-Maria Cruciat, Marita Remor, Christian Hofert, Malgorzata Schelder, Miro Brajenovic, Heinz Ruffner, Alejandro Merino, Karin Klein, Manuela Hudak, David Dickson, Tatjana Rudi, Volker Gnau, Angela Bauch, Sonja Bastuck, Bettina Huhse, Christina Leutwein, Marie-Anne Heurtier, Richard R. Copley, Angela Edelmann, Erich Querfurth, Vladimir Rybin, Gerard Drewes, Manfred Raida, Tewis Bouwmeester, Peer Bork, Bertrand Seraphin, Bernhard Kuster, Gitte Neubauer, Giulio Superti-Furga posted by 27 people aceol carlk chica lawraga semin cerca taenneken adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq kdl steinmetzlab iris_2001 csanford frohike ethkim
	The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease [My Copy] Science, Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935. by Justin Lamb, Emily D. Crawford, David Peck, et al.Joshua W. Modell, Irene C. Blat, Matthew J. Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N. Ross, Michael Reich, Haley Hieronymus, Guo Wei, Scott A. Armstrong, Stephen J. Haggarty, Paul A. Clemons, Ru Wei, Steven A. Carr, Eric S. Lander, Todd R. Golub posted by 39 people gbloeb zufar ipark-kaist bertelsen mingzhi AbnerCYH Dulcinea dansullivanblk BragilMassoud guhjy kuhn jfr yas balajis marcius lhonigberg neveaire kengg ealloza koller mlovell jdiggans ezra jeremymiller frohike massivemayhem lp2 pablomendes Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab BioinfoCIPF SGU-CIPF GeschwindLab Plantandetc jdiezperezj askrajiv
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted by 49 people robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest Network Analysis of Genes Regulated in Renal Diseases daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab shoshin ic4 generif_paper shikin nolodie GomezLab mingzhi carlk yaredo
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong D. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted by 32 people colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer kdl Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin GeneGo ksiek carlk
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 47 people darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted by 23 people aceol MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes kdl Bioinformatics shikin hplatero csanford carlk
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted by 36 people aceol mpotamias Paccanaro Lab paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq kdl EBI-regulation BioinfoCIPF SGU-CIPF Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted by 83 people antonkratz jaspervoskuilen complex networks Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon GEB dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin GeneGo carlk applesnow subhacom i-stevenson ethkim
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted by 36 people antonkratz dagmar biomcgary poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock carlk awooga tvdbulck vsausg dragonrez
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted by 26 people daforerog shikin jimineep Jarman Lab ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards kdl Bioinformatics JJJ athleem
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted by 25 people zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu Bioinformatics shikin idonaldson Pao-Yang OPIG thomaskelder heliopais AlexanderPico
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted by 18 people myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller frohike kdl Bioinformatics carlk
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted by 42 people Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli Jarman Lab ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet EBI-regulation Plantandetc heliopais mariakmejia tmmurali
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted by 35 people stharward antonkratz ipark-kaist svozil bertelsen Bioinformatics - CRUK Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura structural_bioinformatics Bioinformatics heliopais shikin minostro giovenko jo_davies aviad_work
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted by 19 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted by 43 people Biostatistics ctacmo abrentnall jperkins CulCog jlorent zufar bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos Bioinformatics Regulomics_UCHSC rschulz dragonrez isimpson vertikalist BTS-PT-AS-CS
	Statistical significance for genomewide studies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445. by John D. Storey, Robert Tibshirani posted by 37 people jperkins arider1 ilyashl icecrown bertelsen jbhiatt aviad_work biomcgary daforerog treangen druvus vertikalist maximilianh BTS-PT-AS-CS diging_data egreenfest guhjy textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso Bioinformatics shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted by 29 people Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff rsantana druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum Bioinformatics vietanh0 eacosta aaalxy srp33
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted by 49 people sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies parkinson's disease references psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB srp33 Ema daed
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted by 18 people kaarsinogen pdelosri jfr chad_davis balajis nirfriedman dquest grahamc cjeans EPFL_SB_ITP_LBS hpaces Pao-Yang oktie carlk Borelli AbnerCYH cerca ethkim
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted by 25 people cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel kdl EBI-regulation Evangelia shung phoenixzxl penpen926 carlk frohike
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted by 23 people hzoltan zufar srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar SIMR bioinformatics ghattem jfr ealloza shigepong BioinfoCIPF heliopais guhjy diging_data BTS-PT-AS-CS
	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted by 32 people jperkins VGreiff lwaldron shikin jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies MathBio Bioinformatics Computational_Systems_Biology Systems_Biology waszak bakakaj vertikalist
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 26 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted by 34 people yaredo Complex Networks fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus Jarman Lab ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac Bioinformatics shikin oelemento roys GeneGo ptrobajo dap5087 saman_vp verdicchio
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted by 24 people chica akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel T_lab mingzhi vietanh0 cdeane carlk
	A comprehensive analysis of protein\|[ndash]\|protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted by 22 people aceol mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry kdl hplatero csanford carlk
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted by 38 people JeremyZucker daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 dIEMoSIRIS MoSi-Rostock compneur Evangelia pmendes yggdrasil carlk Borelli
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted by 22 people carlk snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz kdl EBI-regulation shikin s041629 GeneGo pmendes mtruksa chasmand
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted by 26 people cerca ptrobajo kiekyon AbnerCYH roys jwhitney dragonrez Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel SysbioMPI-TCells mingzhi ellakat carlk
	Probabilistic model of the human protein-protein interaction network [My Copy] Nature Biotechnology, Vol. 23, No. 8., pp. 951-959. by Daniel R. Rhodes, Scott A. Tomlins, Sooryanarayana Varambally, et al.Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M. Chinnaiyan posted by 21 people snow_dragon Borelli tonamswish ilyashl aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz kdl EBI-regulation mingzhi maralena phoenixzxl penpen926
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [My Copy] Nature genetics, Vol. 34, No. 2. (11 June 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted by 28 people chasmand stharward bertelsen ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne Jarman Lab ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work
	A human phenome-interactome network of protein complexes implicated in genetic disorders. [My Copy] Nature biotechnology, Vol. 25, No. 3. (07 March 2007), pp. 309-316. by Kasper Lage, E. Olof Karlberg, Zenia M. Størling, et al.Páll I. Olason, Anders G. Pedersen, Olga Rigina, Anders M. Hinsby, Zeynep Tümer, Flemming Pociot, Niels Tommerup, Yves Moreau, Søren Brunak posted by 15 people ptrobajo daforerog saket carlk yyby daed guhjy kuhn jfr ealloza JBEgwa01 grahamc cjeans BioinfoCIPF jiny
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	GOLEM: an interactive graph-based gene-ontology navigation and analysis tool [My Copy] BMC Bioinformatics, Vol. 7 (10 October 2006), 443. by Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya posted by 9 people bertelsen guhjy tardigrade ealloza giovanni jdiggans BioinfoCIPF GeschwindLab carlk
	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. [My Copy] Nature biotechnology, Vol. 24, No. 9. (September 2006), pp. 1151-1161. by , L. Shi, L. H. Reid, et al.W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, W. Slikker posted by 19 people VGreiff bertelsen lwaldron daforerog rdiaz jo_davies pengchy kentsis jfr jdiggans qmwwallace cberry shigepong caseybrown giovenko shikin slevy03 guhjy vmsr
	Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways. [My Copy] Genome biology, Vol. 7, No. 10. (17 October 2006), R93. by David M. Levine, David R. Haynor, John C. Castle, et al.Sergey B. Stepaniants, Matteo Pellegrini, Mao Mao, Jason M. Johnson posted by 9 people ptrobajo daforerog ipark-kaist fisherp dragonrez jfr ealloza BioinfoCIPF heliopais
	A map of the interactome network of the metazoan C. elegans. [My Copy] Science (New York, N.Y.), Vol. 303, No. 5657. (23 January 2004), pp. 540-543. by S. Li, C. M. Armstrong, N. Bertin, et al.H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, S. Van Den Heuvel, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, M. Vidal posted by 17 people mgomes Scis0000002 lawraga thegoose2 semin cerca C. elegans / WormBase tharris shivaram lfriedl nuke2005 lyongu sesejun Chue kdl carlk ksiek
	Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better [My Copy] PLoS Biol, Vol. 2, No. 12. (14 December 2004), e439. by Joel E. Cohen posted by 58 people pjmaybank balabu pick600 jsvoboda tkf jorisslob dIEMoSIRIS arne beete rklancer BioGeek betainverse korakot cito pete hamish karbak A_Olympia beccaf22 rmj001 devin dsquared nozeresc DineshGaitonde macowell marimo bpb grzegorz cmmorel bayesian piscinero marcius eckart_bindewald eweaver wnpx dullhunk caporaso mmt xinian jrbanga Philosophy_of_Information Blog_and_Wiki_Research Fluid-Mechanics-and-Thermal-Science-Research MathBio bpcusack EisenLab Computational_Systems_Biology XMLDataManagement biomedical-nlp BUiGEM BioinfoCIPF SGU-CIPF quianominorleo jn221 grahamc joseph_x_zhou bioNetwork_sysBio biophysics
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by Hidde de Jong posted by 34 people mjoach Borelli qluo antonkratz reyez smac tlse65 wangbo GEB dlobo jago behindtherabbit cswinburne Jarman Lab ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies VirtualPlants Plantandetc compneur roys maburkitt phoenixzxl
	Similarities and Differences in Genome-Wide Expression Data of Six Organisms [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e9. by Sven Bergmann, Jan Ihmels, Naama Barkai posted by 14 people bertelsen thegoose2 floatingpoint roys C. elegans / WormBase tharris dragonrez Ayest RMGraze marcius koller BioinfoCIPF SGU-CIPF jeremymiller
	Conserved pathways within bacteria and yeast as revealed by global protein network alignment [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11394-11399. by Brian P. Kelley, Roded Sharan, Richard M. Karp, et al.Taylor Sittler, David E. Root, Brent R. Stockwell, Trey Ideker posted by 12 people chica emmackinnon okarsligil balajis nuke2005 gurkanbebek mirzazadeh denilw shu Bioinformatics mdstobbe carlk
	Genomics of microRNA [My Copy] Trends in Genetics, Vol. 22, No. 3. (27 March 2006), pp. 165-173. by V. Kim, J. Nam posted by 19 people dayjm heliopais GustavoLacerda marcius eckart_bindewald tardigrade andersbj dchughes mtagaya stajich Garamonfok Bioinformatics microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling ale jo_davies
	Natural selection on human microRNA binding sites inferred from SNP data. [My Copy] Nat Genet (29 October 2006) by Kevin Chen, Nikolaus Rajewsky posted by 17 people emptyhb provero capitall lp2 jfr tardigrade andersbj mtagaya ealloza plofje Garamonfok Bioinformatics microRNA BioinfoCIPF heliopais bpcusack ramensky
	A gene atlas of the mouse and human protein-encoding transcriptomes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067. by Andrew I. Su, Tim Wiltshire, Serge Batalov, et al.Hilmar Lapp, Keith A. Ching, David Block, Jie Zhang, Richard Soden, Mimi Hayakawa, Gabriel Kreiman, Michael P. Cooke, John R. Walker, John B. Hogenesch posted by 21 people sjcockell daveGerrard harel_shein suizifish lawraga frohike daforerog dragonrez nickluscombe jeremymiller eukfn usagi-kirin cjeans asu EBI-regulation GeschwindLab shikin jdiezperezj caseybrown maralena gjuggler
	Summaries of Affymetrix GeneChip probe level data [My Copy] Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted by 18 people jperkins daforerog lwaldron shikin dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz bertelsen srp33
	Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e108-116. by Elena Edelman, Alessandro Porrello, Justin Guinney, et al.Bala Balakumaran, Andrea Bild, Phillip G. Febbo, Sayan Mukherjee posted by 11 people ipark-kaist guhjy aviad_work ptrobajo dragonrez jfr frohike Bioinformatics heliopais barriot srp33
	The Transcriptional Landscape of the Mammalian Genome [My Copy] Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563. by The FANTOM Consortium, P. Carninci, T. Kasukawa, et al.S. Katayama, J. Gough, M. C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V. B. Bajic, S. E. Brenner, S. Batalov, A. R. R. Forrest, M. Zavolan, M. J. Davis, L. G. Wilming, V. Aidinis, J. E. Allen, A. Ambesi-Impiombato, R. Apweiler, R. N. Aturaliya, T. L. Bailey, M. Bansal, L. Baxter, K. W. Beisel, T. Bersano, H. Bono, A. M. Chalk, K. P. Chiu, V. Choudhary, A. Christoffels, D. R. Clutterbuck, M. L. Crowe, E. Dalla, B. P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C. F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, P. Georgii-Hemming, T. R. Gingeras, T. Gojobori, R. E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T. K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S. P. T. Krishnan, A. Kruger, S. K. Kummerfeld, I. V. Kurochkin, L. F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. McWilliam, Madan M. Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, S. Mottagui-Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K. C. Pang, W. J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J. F. Reid, B. Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S. L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C. A. M. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S. L. Tan, S. Tang, M. S. Taylor, J. Tegner, S. A. Teichmann, H. R. Ueda, E. van Nimwegen, R. Verardo, C. L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S. M. Grimmond, R. D. Teasdale, E. T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J. S. Mattick, D. A. Hume, RIKEN Genome Exploration Research Group and Genome Science Group Genome Network Project Core Group, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, M. Kanamori-Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Y. Okamura-Oho, H. Suzuki, J. Kawai, Y. Hayashizaki posted by 21 people hagechouchin443 daforerog guhjy myrtilus setar miguel Cortel jwortman jfr tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mtagaya olympos raylim Bioinformatics gjuggler
	Uncovering the overlapping community structure of complex networks in nature and society [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 814-818. by Gergely Palla, Imre Derenyi, Illes Farkas, Tamas Vicsek posted by 22 people carlk hendysh rst colmryan saket haewoon theshadowhost kuhn jfr lfriedl wilmegape gcalda ltabourier michaelmampaey Scis0000002 kdl ADMiRes maralena lmichan ellakat tmmurali betaparticle