mcbla's Top Recommendations

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	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted by 18 people krapnik bmduggan pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 sebk granujilla
	Accurate modeling of protein conformation by automatic segment matching. [My Copy] J Mol Biol, Vol. 226, No. 2. (20 July 1992), pp. 507-533. by M. Levitt posted by 5 people rabio mijam warlock6x3 dgront granujilla
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted by 12 people rabio pavanghatty mijam dgront structural_bioinformatics McCammon Bioinformatics barry baker-group sobolevnrm biehl itmeson
	Introduction To Monte Carlo Algorithms [My Copy] (14 Nov 2006) by Werner Krauth posted by 16 people zhengyun Olmi thegoose2 muraken bertelsen ansobol stephensalomons penka dgront gane5h rabio ujarmatokyaniv softsimu mijam tharris tertel
	Replica Monte Carlo Simulation of Spin-Glasses [My Copy] Physical Review Letters, Vol. 57, No. 21. (24 November 1986), 2607. by Robert H. Swendsen, Jian-Sheng Wang posted by 7 people mijam Sylvain_Prigent dgront sikorski rabio qwermish iantunbridge
	Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement. [My Copy] Proteins, Vol. 44, No. 2. (1 August 2001), pp. 133-149. by A. Kolinski, M. R. Betancourt, D. Kihara, P. Rotkiewicz, J. Skolnick posted by 3 people mijam dgront rabio
	Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures [My Copy] The Journal of Chemical Physics, Vol. 113, No. 12. (2000), pp. 5065-5071. by Dominik Gront, Andrzej Kolinski, Jeffrey Skolnick posted by 4 people mijam dgront sikorski rabio
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 34 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	BioShella package of tools for structural biology computations [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 621-622. by Dominik Gront, Andrzej Kolinski posted by 7 people krapnik dimka bicko chad_davis dgront rabio mijam
	Prediction of protein conformational freedom from distance constraints [My Copy] Proteins: Structure, Function, and Genetics, Vol. 29, No. 2. (7 December 1998), pp. 240-251. by B. L. de Groot, D. M. F. van Aalten, R. M. Scheek, A. Amadei, G. Vriend, H. J. C. Berendsen posted by 7 people yhu dgront rabio superpyrin TSRI_MGL Conformational_disease mijam
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted by 12 people rpetrenko kgutwin pjcite chad_davis wouterboomsma j3xucite dgront rabio rph dandaman saunders granujilla
	Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods. [My Copy] Proteins, Vol. 57, No. 1. (1 October 2004), pp. 188-197. by Tomas Ohlson, Björn Wallner, Arne Elofsson posted by 4 people maria_hauser dgront rabio granujilla
	Hidden Markov models for detecting remote protein homologies [My Copy] Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 846-856. by K. Karplus, C. Barrett, R. Hughey posted by 10 people ldiambra treangen j3xucite ana dgront rabio structural_bioinformatics Bioinformatics saunders granujilla
	MaxSub: an automated measure for the assessment of protein structure prediction quality. [My Copy] Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785. by N. Siew, A. Elofsson, L. Rychlewski, D. Fischer posted by 9 people sebk rabio granujilla BragilMassoud marcius dgront BioinfoCIPF SGU-CIPF biehl
	Scoring function for automated assessment of protein structure template quality [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4. (2004), pp. 702-710. by Yang Zhang, Jeffrey Skolnick posted by 12 people dfdong pjcite saunders reyez karbak marcius dgront aengisch rabio BioinfoCIPF SGU-CIPF granujilla
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted by 8 people mijam granujilla bullli502 nigham thaliana dgront JimmyMac saunders
	Protein structure prediction and structural genomics. [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 93-96. by D. Baker, A. Sali posted by 15 people krapnik mijam newton1234 saunders taikoo ana vavi dgront sriram_s mirzazadeh structural_bioinformatics Bioinformatics mingzhi granujilla janasont
	T-Pile--a package for thermodynamic calculations for biomolecules. [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1840-1842. by D. Gront, A. Kolinski posted by 1 person rabio
	How to derive a protein folding potential? A new approach to an old problem. [My Copy] J Mol Biol, Vol. 264, No. 5. (20 December 1996), pp. 1164-1179. by L. A. Mirny, E. I. Shakhnovich posted by 4 people krapnik dgront rabio Ema
	On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review [My Copy] Journal of Computational Chemistry, Vol. 29, No. 2. (14 June 2008), pp. 157-166. by Markus Christen, Wilfred F. van Gunsteren posted by 6 people tovrstra BragilMassoud dgront rabio somak dmobley
	How to write consistently boring scientific literature [My Copy] Oikos, Vol. 116, No. 5. (May 2007), pp. 723-727. by Kaj Sand-Jensen posted by 290 people atlantis2360 teichman gena gbierens kgrothoff fbaroni brembs di_hernandez scorullon Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org INK-SSCI-SCI hearton965 raf003 dejang jrfine421 wkretzsch mzygmunt pajoma ddimitriu mlj pcornill zio_tom78 tramullas alun willwade rabio librarymistress jcb1973 hideojoho mykanth123 HCCSProgram Journal picks jimburton yeminjiao JillianHowlett orrajabi marcela janneb goncalojustino clementinecornu isp Nezha jchiovaro michaelfieseler nathancooper amjedbj fredericraymond Geknitics debeerjonathan nuin thorium ELMlab pirapira arghavani Wikipedia Social Web qili joawe96 lperg paulymer dgront coherent ZhangXiatian richardmcgee andre7520 derchao mittinatten iskanbasal JoseBrox jstenman zhangrenxia janderz8 ulmer azwinkau sdaehne fjanoos eudominguezmartin jaspervoskuilen gvdh kimbatchelor welliegirl DavidG67 nellapower jimo75 sachingarg claudiushauptmann jmzhuo Horduna toszko chriswillmott mthomure Thaverkamp ibre sfalsharif lafuente Sergey_gerbek Torsten_Holmer aaltenburger tminze mmborges Dannycoutinho soniapereira Anita13 simonhearne rudalert ulrichs UWA Science Communication duel_jetty nmsx TVB timsenior livingthingdan alhoori poojamaj letillett christianholz amynmoore pvdg leonardo Med Anthro @ UF cgravlee bhengeveld ansobol jrw proportional wendygarnica jsatkosk eumelus pdpcosta AnthonySoprano wasteland93 buchgeher lmichan NIlz sxs732 artaban421 kieranhood rabit pauljhurtado SantoshKalwar aldra zchen75 nbawia Zephyrus jgebbie lanmuzi amadeusstevenson akuhn metatheory Fneesen hkimura beete CamilleH luciensamary jcreed R_C_Cordeiro thenose cyounkin robertlischke bspackman lyss Scholarly Communication sebpaquet c_hughes klauso kaiserm tomhebbron tarokiritani nGrenier girabbit jaia CulCog alexander_bauer Gaetan cjhall mdwelsh231 sniklas polivares MurphysLab ckai1 tux2000 petko_bogdanov carelcad Tomste yangjustinc thegoose michaelbanks mrt2k9 marekrud ibuch pawelsobko klexa tunheim Elley AJCann amoreno operon McCammon barry jod999 guhjy pick600 leliavski ombamawu mjoach Publicase Thermaneutist gwallau tnhh signori birte bertelsen mmuecke Mohan-S Dori2008 konstantinos charoy flips arsyed sjefarrar rohanlowe syah jjray zzh1986 brownstudy abellogin fungal sgeuter jkglenn psique anphony ajaymalik jjrohal markusd conradlee mschmer gkoenig natstreet BergmanLab cisevol silberbauer Khavkin's lab ArtemPankin druvus allysonlister dullhunk VGreiff dbk ultrascichick ahaeusler rickl brian toomash orca Borelli cmunson lfriedl sterovetta maike echinotrix awooga scpeters jford pratap williamdwalker sjones pseudopharm cjeans sensesublime TaqSys soumitri GeeSharpMinor tumo rebeccamancy ascharle suizan kaniko erklaerbaer boosda kdl Neuroscience STS ColDyn feminist_technoscience OrganizationResearch Enactment Academic Writing, Literacies and Discourse hejibo randomname
	Sequence alignments in the neighborhood of the optimum with general application to dynamic programming. [My Copy] Proc Natl Acad Sci U S A, Vol. 80, No. 10. (May 1983), pp. 3123-3124. by Michael S S. Waterman posted by 3 people jengeldk dgront rabio
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection. [My Copy] Nucleic Acids Res, Vol. 34, No. 17. (2006) by D. Chivian, D. Baker posted by 3 people jwm dgront rabio
	CHARMM: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (FebruaryFebruary 1983), pp. 187-217. by Bernard .. Brooks,, Robert .. Bruccoleri,, Barry .. Olafson,, David .. States,, S. Swaminathan,, Martin Karplus, posted by 19 people ckmyo anallam ubcg08l flbarroso nickolay newton1234 kgutwin r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan gisle
	Practical conversion from torsion space to Cartesian space for in silico protein synthesis. [My Copy] J Comput Chem, Vol. 26, No. 10. (30 July 2005), pp. 1063-1068. by J. Parsons, J. B. Holmes, J. M. Rojas, J. Tsai, C. E. Strauss posted by 2 people dgront rabio
	New Monte Carlo algorithms for protein folding. [My Copy] Current opinion in structural biology, Vol. 9, No. 2. (April 1999), pp. 177-183. by U. H. Hansmann, Y. Okamoto posted by 7 people apaydin flbarroso dgront rabio insectopalo iantunbridge nigham
	Efficient, multiple-range random walk algorithm to calculate the density of states. [My Copy] Phys Rev Lett, Vol. 86, No. 10. (5 March 2001), pp. 2050-2053. by F. Wang, D. P. Landau posted by 2 people dgront rabio
	A reliable sequence alignment method based on probabilities of residue correspondences [My Copy] Protein Eng., Vol. 8, No. 10. (1 October 1995), pp. 999-1009. by Sanzo Miyazawa posted by 3 people krapnik dgront rabio
	Finite-temperature sequence alignment. [My Copy] Pac Symp Biocomput (2000), pp. 624-635. by M. Kschischo, M. Lässig posted by 2 people dgront rabio
	A new approach to Monte Carlo simulations in statistical physics: Wang-Landau sampling [My Copy] American Journal of Physics, Vol. 72, No. 10. (2004), pp. 1294-1302. by D. P. Landau, Shan H. Tsai, M. Exler posted by 5 people Paulius_m pcarbo dgront rabio softsimu
	A unified statistical framework for sequence comparison and structure comparison [My Copy] PNAS, Vol. 95, No. 11. (26 May 1998), pp. 5913-5920. by Michael Levitt, Mark Gerstein posted by 2 people dgront rabio
	Clustering protein sequences--structure prediction by transitive homology [My Copy] Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 935-941. by Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader posted by 4 people yuslinaz verdicchio dgront rabio
	Statistical errors in histogram reweighting [My Copy] Physical Review E, Vol. 51, No. 5. (May 1995), 5092. by Alan M. Ferrenberg, D. P. Landau, Robert H. Swendsen posted by 2 people dgront rabio
	Theory of protein folding. [My Copy] Current opinion in structural biology, Vol. 14, No. 1. (February 2004), pp. 70-75. by José Nelson N. Onuchic, Peter G. Wolynes posted by 8 people krapnik siggi84 flbarroso dgront choonpeng rabio allmensch Diego_Prada
	Modelling the polypeptide backbone with 'spare parts' from known protein structures [My Copy] Protein Eng., Vol. 2, No. 5. (1 January 1989), pp. 335-345. by Michel Claessens, Eric van Cutsem, Ignace Lasters, Shoshana Wodak posted by 3 people rabio j3xucite dgront
	Stochastic pairwise alignments. [My Copy] Bioinformatics, Vol. 18 Suppl 2 (2002) by U. Mückstein, I. L. Hofacker, P. F. Stadler posted by 2 people dgront rabio
	Protein Folding with a Reduced Model and Inaccurate Short-Range Restraints [My Copy] Macromolecular Theory and Simulations, Vol. 14, No. 7. (2005), pp. 444-451. by Dorota Plewczynska, Andrzej Kolinski posted by 2 people dgront rabio
	Conformer generation under restraints. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 2. (April 2006), pp. 160-165. by P. I. de Bakker, N. Furnham, T. L. Blundell, M. A. DePristo posted by 5 people aqeel yongzhao dgront rabio TSRI_MGL
	Scoring profile-to-profile sequence alignments. [My Copy] Protein Sci, Vol. 13, No. 6. (June 2004), pp. 1612-1626. by G. Wang, R. L. Dunbrack posted by 3 people dgront rabio newton1234
	Profile-profile alignment: a powerful tool for protein structure prediction. [My Copy] Pac Symp Biocomput (2003), pp. 252-263. by N. von Ohsen, I. Sommer, R. Zimmer posted by 2 people dgront rabio
	Profile analysis: detection of distantly related proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 84, No. 13. (July 1987), pp. 4355-4358. by M. Gribskov, A. D. McLachlan, D. Eisenberg posted by 4 people dgront rabio Evangelia ca3295
	HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins1 [My Copy] Journal of Molecular Biology, Vol. 301, No. 1. (04 August 2000), pp. 173-190. by Christopher Bystroff, Vesteinn Thorsson, David Baker posted by 7 people jwm wouterboomsma j3xucite dgront rabio wenhan MBLAB
	Exploiting the past and the future in protein secondary structure prediction. [My Copy] Bioinformatics, Vol. 15, No. 11. (November 1999), pp. 937-946. by P. Baldi, S. Brunak, P. Frasconi, G. Soda, G. Pollastri posted by 5 people dgront paolo rabio Bioinformatics girschick
	Is there a unifying mechanism for protein folding? [My Copy] Trends Biochem Sci, Vol. 28, No. 1. (January 2003), pp. 18-25. by V. Daggett, A. R. Fersht posted by 6 people Einat dgront allmensch rabio mirzazadeh structural_bioinformatics
	Exploring protein energy landscapes with hierarchical clustering. [My Copy] Int J Quantum Chem, Vol. 105, No. 6. (2005), pp. 826-830. by Dominik Gront, Ulrich H E H. Hansmann, Andrzej Kolinski posted by 2 people dgront rabio
	HCPM--program for hierarchical clustering of protein models. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3179-3180. by D. Gront, A. Kolinski posted by 5 people barry dgront rabio structural_bioinformatics Bioinformatics
	PDB file parser and structure class implemented in Python [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2308-2310. by Thomas Hamelryck, Bernard Manderick posted by 10 people krapnik edws klexa Structural Biology Group TorVergata oteri dgruiz bicko dgront rabio massivemayhem
	Profile hidden Markov models [My Copy] Bioinformatics, Vol. 14, No. 9. (1 October 1998), pp. 755-763. by S. R. Eddy posted by 15 people ldiambra farhat BioNica druvus albert_swart miguel chad_davis eweaver dgront rabio cjeans suizan nklee yoanjacquemin ca3295
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. [My Copy] Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747. by I. N. Shindyalov, P. E. Bourne posted by 14 people medic0747 sebk reyez pjcite nigham jwm analogAI dgront rabio siebertm Radiation_Damage Stressosome Inchoate sim82
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted by 25 people krapnik mgomes Marcotte_Lab qluo stevanspringer Einat marcius eckart_bindewald analogAI dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF mingzhi bethbromley ca3295
	Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. [My Copy] J Mol Biol, Vol. 213, No. 4. (20 June 1990), pp. 859-883. by M. J. Sippl posted by 8 people rabio bicko P2324548 apostola bpb tolot27 dgront aengisch
	PROFcon: novel prediction of long-range contacts [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2960-2968. by Marco Punta, Burkhard Rost posted by 2 people dgront rabio
	Using quaternions to calculate RMSD. [My Copy] J Comput Chem, Vol. 25, No. 15. (30 November 2004), pp. 1849-1857. by E. A. Coutsias, C. Seok, K. A. Dill posted by 7 people eskay Diego_Prada BragilMassoud apaydin nachtalp dgront rabio
	Topology fingerprint approach to the inverse protein folding problem. [My Copy] J Mol Biol, Vol. 227, No. 1. (5 September 1992), pp. 227-238. by A. Godzik, A. Kolinski, J. Skolnick posted by 6 people ana vavi dgront rabio structural_bioinformatics Bioinformatics
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	A minimal sequence code for switching protein structure and function. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 50. (15 December 2009), pp. 21149-21154. by Patrick A. Alexander, Yanan He, Yihong Chen, John Orban, Philip N. Bryan posted by 8 people paulschlesinger bpcusack paulymer rabio mijam TRHvidsten sobolevnrm biehl
	Generalized ensemble methods for de novo structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1415-1420. by Alena Shmygelska, Michael Levitt posted by 7 people mijam rabio kentsis apaydin nurban hmk amishp
	RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. S3. (1999), pp. 15-21. by Tim J. P. Hubbard posted by 2 people mijam rabio
	Comparative modeling without implicit sequence alignments [My Copy] Bioinformatics (27 July 2007), btm380. by Andrzej Kolinski, Dominik Gront posted by 3 people rabio carlescorbi sekmi
	Hierarchical modeling of protein interactions [My Copy] Journal of Molecular Modeling, Vol. 13, No. 6. (1 July 2007), pp. 691-698. by Mateusz Kurcinski, Andrzej Kolinski posted by 4 people rabio mijam mkurc naitsabes
	Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field [My Copy] BMC Structural Biology, Vol. 7, No. 1. (29 June 2007), 43. by Sebastian Kmiecik, Dominik Gront, Andrzej Kolinski posted by 4 people mijam wouterboomsma rabio sekmi
	Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures. [My Copy] Biophys J, Vol. 90, No. 12. (15 June 2006), pp. 4558-4573. by K. L. Damm, H. A. Carlson posted by 6 people mijam nickolay blackbart choonpeng rabio higueruelo
	A composite score for predicting errors in protein structure models [My Copy] Protein Science, Vol. 15, No. 7. (July 2006), pp. 1653-1666. by David Eramian, Min-yi Shen, Damien Devos, Francisco Melo, Andrej Sali, Marc A. Marti-Renom posted by 6 people rabio dimka vavi wouterboomsma mijam j3xucite
	REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Yunqi Li, Yang Zhang posted by 2 people dgront mijam
	The phase problem. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 59, No. Pt 11. (November 2003), pp. 1881-1890. by G. Taylor posted by 2 people mijam dgront
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted by 11 people dgront bmduggan choonpeng mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders gisle
	Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by El-Ad D. Amir, Nir Kalisman, Chen Keasar posted by 3 people rsantana dgront mijam
	Analytical approximation to the accessible surface area of proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 77, No. 4. (April 1980), pp. 1736-1740. by Shoshana J. Wodak, Joël Janin posted by 3 people melo_mcr dgront mijam
	Characterization of protein-folding pathways by reduced-space modeling. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 30. (24 July 2007), pp. 12330-12335. by Sebastian Kmiecik, Andrzej Kolinski posted by 7 people saunders carlosjavierna mijam wouterboomsma mkurc sekmi nh
	Joint neighbors approximation of macromolecular solvent accessible surface area. [My Copy] J Comput Chem (3 April 2007) by Georgy Rychkov, Michael Petukhov posted by 4 people dgront mijam hryk BragilMassoud
	Evaluation of coarse grained models for hydrogen bonds in proteins. [My Copy] J Comput Chem (13 February 2007) by David De Sancho, Antonio Rey posted by 4 people Vadikus dgront choonpeng mijam
	The penultimate rotamer library [My Copy] Proteins: Structure, Function, and Genetics, Vol. 40, No. 3. (2000), pp. 389-408. by Simon C. Lovell, Michael J. Word, Jane S. Richardson, David C. Richardson posted by 3 people dgront kazemi mijam
	A contact map matching approach to protein structure similarity analysis. [My Copy] Genet Mol Res, Vol. 5, No. 2. (2006), pp. 284-308. by R. C. de Melo, C. E. Lopes, F. A. Fernandes, et al.C. H. da Silveira, M. M. Santoro, R. L. Carceroni, W. Meira, A. d. e. . A. Araújo posted by 3 people vavi dgront mijam
	Structure validation by Calpha geometry: &phis;,psi and Cbeta deviation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 3. (15 February 2003), pp. 437-450. by Simon C. Lovell, Ian W. Davis, W. Bryan Arendall, et al.Paul I. W. de Bakker, J. Michael Word, Michael G. Prisant, Jane S. Richardson, David C. Richardson posted by 12 people Diego_Prada bmduggan aqeel jwm robert dgront xiaobeizhao martainn Radiation_Damage Stressosome mijam pavanghatty
	A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 369-379. by Jan Kosinski, Iwona A. Cymerman, Marcin Feder, Michal A. Kurowski, Joanna M. Sasin, Janusz M. Bujnicki posted by 4 people mijam Einat dgront structural_bioinformatics
	Recovery of protein structure from contact maps. [My Copy] Fold Des, Vol. 2, No. 5. (1997), pp. 295-306. by M. Vendruscolo, E. Kussell, E. Domany posted by 4 people vavi dgront babakap mijam
	Protein fragment reconstruction using various modeling techniques. [My Copy] J Comput Aided Mol Des, Vol. 17, No. 11. (November 2003), pp. 725-738. by M. Boniecki, P. Rotkiewicz, J. Skolnick, A. Kolinski posted by 2 people mijam dgront
	Efficient rotamer elimination applied to protein side-chains and related spin glasses. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1335-1340. by R. F. Goldstein posted by 7 people dfgreen dgront bluvsh1 kazemi rsantana mijam carlk
	The dead-end elimination theorem and its use in protein side-chain positioning [My Copy] Nature, Vol. 356, No. 6369. (April 1992), pp. 539-542. by Johan Desmet, , Marc D. Maeyer, Bart Hazes, Ignace Lasters posted by 4 people dfgreen dgront bluvsh1 mijam
	Cyclic coordinate descent: A robotics algorithm for protein loop closure. [My Copy] Protein Sci, Vol. 12, No. 5. (May 2003), pp. 963-972. by A. A. Canutescu, R. L. Dunbrack posted by 6 people vavi yongzhao j3xucite dgront TSRI_MGL mijam
	Rotamer libraries in the 21st century. [My Copy] Current opinion in structural biology, Vol. 12, No. 4. (August 2002), pp. 431-440. by Roland L. Dunbrack posted by 11 people bmduggan yongzhao dgront blackbart kazemi rsantana medic0747 TSRI_MGL LamBras mijam jwm
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted by 15 people MuraLab karbak nknii j3xucite dgront blackbart kazemi rsantana hmk TCR_Signaling LamBras mijam jwm phoenixzxl zwang
	Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics. [My Copy] J Mol Biol, Vol. 307, No. 1. (16 March 2001), pp. 429-445. by L. L. Looger, H. W. Hellinga posted by 6 people dfgreen nknii dgront TCR_Signaling mijam carlk
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted by 8 people dfdong rsaito cactus karbak thaliana fjc1 rabio granujilla
	VERIFY3D: assessment of protein models with three-dimensional profiles. [My Copy] Methods Enzymol, Vol. 277 (1997), pp. 396-404. by D. Eisenberg, R. Lüthy, J. U. Bowie posted by 3 people j3xucite dgront granujilla
	Searching databases of conserved sequence regions by aligning protein multiple-alignments. [My Copy] Nucleic Acids Res, Vol. 24, No. 19. (1 October 1996), pp. 3836-3845. by S. Pietrokovski posted by 3 people Dulce dgront granujilla
	Errors in protein structures. [My Copy] Nature, Vol. 381, No. 6580. (23 May 1996) by R. W. Hooft, G. Vriend, C. Sander, E. E. Abola posted by 2 people dgront granujilla
	SWISS-MODEL: An automated protein homology-modeling server. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3381-3385. by T. Schwede, J. Kopp, N. Guex, M. C. Peitsch posted by 10 people krapnik flbarroso shacko sebk bpb ffranca dgront gelack Haggan granujilla
	The Sequence of the Human Genome [My Copy] Science In Science, Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351. by J. Craig Venter, Mark D. Adams, Eugene W. Myers, et al.Peter W. Li, Richard J. Mural, Granger G. Sutton, Hamilton O. Smith, Mark Yandell, Cheryl A. Evans, Robert A. Holt, Jeannine D. Gocayne, Peter Amanatides, Richard M. Ballew, Daniel H. Huson, Jennifer R. Wortman, Qing Zhang, Chinnappa D. Kodira, Xiangqun H. Zheng, Lin Chen, Marian Skupski, Gangadharan Subramanian, Paul D. Thomas, Jinghui Zhang, George L. Gabor Miklos, Catherine Nelson, Samuel Broder, Andrew G. Clark, Joe Nadeau, Victor A. McKusick, Norton Zinder, Arnold J. Levine, Richard J. Roberts, Mel Simon, Carolyn Slayman, Michael Hunkapiller, Randall Bolanos, Arthur Delcher, Ian Dew, Daniel Fasulo, Michael Flanigan, Liliana Florea, Aaron Halpern, Sridhar Hannenhalli, Saul Kravitz, Samuel Levy, Clark Mobarry, Knut Reinert, Karin Remington, Jane Abu-Threideh, Ellen Beasley, Kendra Biddick, Vivien Bonazzi, Rhonda Brandon, Michele Cargill, Ishwar Chandramouliswaran, Rosane Charlab, Kabir Chaturvedi, Zuoming Deng, Valentina D. Francesco, Patrick Dunn, Karen Eilbeck, Carlos Evangelista, Andrei E. Gabrielian, Weiniu Gan, Wangmao Ge, Fangcheng Gong, Zhiping Gu, Ping Guan, Thomas J. Heiman, Maureen E. Higgins, Rui-Ru Ji, Zhaoxi Ke, Karen A. Ketchum, Zhongwu Lai, Yiding Lei, Zhenya Li, Jiayin Li, Yong Liang, Xiaoying Lin, Fu Lu, Gennady V. Merkulov, Natalia Milshina, Helen M. Moore, Ashwinikumar K. Naik, Vaibhav A. Narayan, Beena Neelam, Deborah Nusskern, Douglas B. Rusch, Steven Salzberg, Wei Shao, Bixiong Shue, Jingtao Sun, Zhen Y. Wang, Aihui Wang, Xin Wang, Jian Wang, Ming-Hui Wei, Ron Wides, Chunlin Xiao, Chunhua Yan, Alison Yao, Jane Ye, Ming Zhan, Weiqing Zhang, Hongyu Zhang, Qi Zhao, Liansheng Zheng, Fei Zhong, Wenyan Zhong, Shiaoping C. Zhu, Shaying Zhao, Dennis Gilbert, Suzanna Baumhueter, Gene Spier, Christine Carter, Anibal Cravchik, Trevor Woodage, Feroze Ali, Huijin An, Aderonke Awe, Danita Baldwin, Holly Baden, Mary Barnstead, Ian Barrow, Karen Beeson, Dana Busam, Amy Carver, Angela Center, Ming L. Cheng, Liz Curry, Steve Danaher, Lionel Davenport, Raymond Desilets, Susanne Dietz, Kristina Dodson, Lisa Doup, Steven Ferriera, Neha Garg, Andres Gluecksmann, Brit Hart, Jason Haynes, Charles Haynes, Cheryl Heiner, Suzanne Hladun, Damon Hostin, Jarrett Houck, Timothy Howland, Chinyere Ibegwam, Jeffery Johnson, Francis Kalush, Lesley Kline, Shashi Koduru, Amy Love, Felecia Mann, David May, Steven McCawley, Tina McIntosh, Ivy McMullen, Mee Moy, Linda Moy, Brian Murphy, Keith Nelson, Cynthia Pfannkoch, Eric Pratts, Vinita Puri, Hina Qureshi, Matthew Reardon, Robert Rodriguez, Yu-Hui Rogers, Deanna Romblad, Bob Ruhfel, Richard Scott, Cynthia Sitter, Michelle Smallwood, Erin Stewart, Renee Strong, Ellen Suh, Reginald Thomas, Ni N. Tint, Sukyee Tse, Claire Vech, Gary Wang, Jeremy Wetter, Sherita Williams, Monica Williams, Sandra Windsor, Emily Winn-Deen, Keriellen Wolfe, Jayshree Zaveri, Karena Zaveri, Josep F. Abril, Roderic Guigo, Michael J. Campbell, Kimmen V. Sjolander, Brian Karlak, Anish Kejariwal, Huaiyu Mi, Betty Lazareva, Thomas Hatton, Apurva Narechania, Karen Diemer, Anushya Muruganujan, Nan Guo, Shinji Sato, Vineet Bafna, Sorin Istrail, Ross Lippert, Russell Schwartz, Brian Walenz, Shibu Yooseph, David Allen, Anand Basu, James Baxendale, Louis Blick, Marcelo Caminha, John Carnes-Stine, Parris Caulk, Yen-Hui Chiang, My Coyne, Carl Dahlke, Anne D. Mays, Maria Dombroski, Michael Donnelly, Dale Ely, Shiva Esparham, Carl Fosler, Harold Gire, Stephen Glanowski, Kenneth Glasser, Anna Glodek, Mark Gorokhov, Ken Graham, Barry Gropman, Michael Harris, Jeremy Heil, Scott Henderson, Jeffrey Hoover, Donald Jennings, Catherine Jordan, James Jordan, John Kasha, Leonid Kagan, Cheryl Kraft, Alexander Levitsky, Mark Lewis, Xiangjun Liu, John Lopez, Daniel Ma, William Majoros, Joe McDaniel, Sean Murphy, Matthew Newman, Trung Nguyen, Ngoc Nguyen, Marc Nodell, Sue Pan, Jim Peck, Marshall Peterson, William Rowe, Robert Sanders, John Scott, Michael Simpson, Thomas Smith, Arlan Sprague, Timothy Stockwell, Russell Turner, Eli Venter, Mei Wang, Meiyuan Wen, David Wu, Mitchell Wu, Ashley Xia, Ali Zandieh, Xiaohong Zhu posted by 40 people VGreiff darenberg n00c rshe dspringett humburg vplagnol mqbphcw3 Scis0000002 fisherp sgoetz thegoose treangen frohike jo_davies reyez twenta aramata Cortel jwortman jnemecek bicko Dax42 yas balajis xdeupi arcticrasta dgront olympos incovoma naegele mimulus_99 Proteinkinases T_lab LabCompMed brant granujilla CitoJam renatomilani Neeperando
	Comparative protein structure modeling of genes and genomes. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 29 (2000), pp. 291-325. by M. A. Martí-Renom, A. C. Stuart, A. Fiser, R. Sánchez, F. Melo, A. Sali posted by 18 people tjimenez jperkins fautore aalibes nigham chad_davis ttjoseph marcius ffranca duartemolha dgront ruvido insectopalo BioinfoCIPF SGU-CIPF min013 IrinaMoreira granujilla
	Detecting distant homology with Meta-BASIC [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W576-581. by Krzysztof Ginalski, Marcin von Grotthuss, Nick V. Grishin, Leszek Rychlewski posted by 3 people jperkins rabio schuylrp
	Sequence comparison and protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 16, No. 3. (June 2006), pp. 374-384. by R. L. Dunbrack posted by 7 people flbarroso agustinarce wouterboomsma xiaobeizhao rabio schuylrp jwm
	Critical assessment of methods of protein structure prediction (CASP)--round 6. [My Copy] Proteins, Vol. 61 Suppl 7 (2005), pp. 3-7. by J. Moult, K. Fidelis, B. Rost, T. Hubbard, A. Tramontano posted by 6 people timhubbard j3xucite dgront aengisch schuylrp saunders
	GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. [My Copy] Journal of molecular biology, Vol. 287, No. 4. (9 April 1999), pp. 797-815. by D. T. Jones posted by 6 people jperkins pjcite j3xucite dgront schuylrp janasont
	Defrosting the frozen approximation: PROSPECTOR--a new approach to threading. [My Copy] Proteins, Vol. 42, No. 3. (15 February 2001), pp. 319-331. by J. Skolnick, D. Kihara posted by 2 people dgront schuylrp
	TASSER: An automated method for the prediction of protein tertiary structures in CASP6. [My Copy] Proteins (26 September 2005) by Yang Zhang, Adrian K K. Arakaki, Jeffrey Skolnick posted by 7 people nigham marcius dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
	Free modeling with Rosetta in CASP6. [My Copy] Proteins (26 September 2005) by Philip Bradley, Lars Malmström, Bin Qian, et al.Jack Schonbrun, Dylan Chivian, David E E. Kim, Jens Meiler, Kira M S M. Misura, David Baker posted by 9 people krapnik saunders jwm marcius dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
	Loop modeling: sampling, filtering, and scoring. [My Copy] Proteins (29 August 2007) by Cinque S S. Soto, Marc Fasnacht, Jiang Zhu, Lucy Forrest, Barry Honig posted by 4 people mijam granujilla cdeane OPIG
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted by 8 people maria_hauser operon newton1234 joseolucha mijam reyez pjcite granujilla