mdperry's Top Recommendations

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	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted by 29 people bsamal hzoltan Neuroblastoma fpattyn stubrown isimpson SIMR bioinformatics huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg BenosLab bais idonaldson
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted by 23 people torfinnnome hzoltan darian n00c polivares idonaldson tonamswish ewilban1 humburg Bioinformatics Thaverkamp natstreet druvus Mycology stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 48 people ongenetics cajunsushi davidmam manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted by 21 people bedo hzoltan fpattyn gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley SIMR bioinformatics ghattem abizar polivares idonaldson WanderingAengus guhjy
	Design and analysis of ChIP-seq experiments for DNA-binding proteins [My Copy] Nature Biotechnology, Vol. 26, No. 12. (16 November 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted by 23 people oannes hzoltan stubrown guhjy gdb tonamswish KCL & UCL Bioinformatics ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz SIMR bioinformatics ghattem
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted by 21 people hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish JLab BergmanLab guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 53 people sotacam CPI UU AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted by 48 people arthegall provero rsaito BergmanLab daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre Mycology stajich bpcusack jbhiatt djkt structural_bioinformatics dhlbh friendpine RockmanLab EisenLab cis-regulatory-evolution dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. [My Copy] Genome biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven L. Salzberg posted by 45 people jts oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 54 people kshameer mayercd bsamal icecrown natstreet provero psique darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology In PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted by 54 people frohike michaelbarton Jporci kevinemamy heliopais Bioinformatics Core Service jforment jfr burak idoerg Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet BergmanLab polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz Bioinformatics dswan reyez kshameer TRHvidsten djkt Journal picks ppgardne
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted by 46 people rschulz bsamal zufar CUBES hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted by 47 people icecrown GustavoLacerda lisa1 singhsh epigenetics davidmam Thaverkamp druvus dullhunk 8_01 suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia logics of knowledge realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa FAB-lab bpcusack
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 44 people aheilbut claire_jubin urgi seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted by 41 people jts urgi agbiotec lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton BergmanLab polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon SIMR bioinformatics ghattem n00c Bioinformatics danmaclean Journal picks ppgardne nuin rschulz natstreet druvus humburg
	Next-generation DNA sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted by 54 people bertelsen tux2000 JamesBarger darian burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin jbhiatt yupu Bioinformatics behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Roswell Cancer Crosstalk Zephyrus psique natstreet druvus nuin alexknight reyez dbk Oxford Virology wsjames pengchy GeeSharpMinor
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (7 March 2008), pp. 393-403. by David S. Johnson, Wei Li, D. Benjamin Gordon, et al.Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu posted by 15 people fenghezi jfr kengg djkt xiaobeizhao cabbagezs idonaldson BergmanLab caseybrown magusina lp2 stajich Mycology gracio gdb
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted by 30 people idonaldson ongenetics juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown BergmanLab polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c SIMR bioinformatics ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted by 31 people humburg hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp BergmanLab idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl Mycology stajich n00c torfinnnome nuin kshameer neils druvus natstreet
	SOAP2: an improved ultrafast tool for short read alignment. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah W. Lam, Siu-Ming M. Yiu, Karsten Kristiansen, Jun Wang posted by 38 people jts Mycology stajich darian nuin hzoltan agbiotec torfinnnome natstreet cthachuk Bioinformatics Core Service jforment GustavoLacerda adijr bozdagd stubrown BergmanLab polivares guhjy Orengo Group Journal Picks ollieredfernwork operon cassj adamjamesreid Bioinformatics - CRUK Stew jamselem Bioinformatics dswan Journal picks idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted by 19 people hzoltan Vincent_Rouilly mfgreen ewilban1 idonaldson guhjy Chinnaiyan Lab mkiyer rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago SIMR bioinformatics malcook BergmanLab polivares Journal picks
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted by 15 people bsamal jfr tonamswish rdiaz fpattyn Journal picks jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg
	How to map billions of short reads onto genomes. [My Copy] Nature biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted by 38 people michaelbarton frohike agbiotec burak cthachuk hzoltan tonamswish heliopais giovenko Bioinformatics jfr torfinnnome daforerog jonilaserson Chinnaiyan Lab mkiyer Annab darian BergmanLab polivares SIMR bioinformatics ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Bioinformatics - CRUK Stew inesdesantiago idonaldson neils
	JBrowse: a next-generation genome browser. [My Copy] Genome research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted by 33 people ongenetics dullhunk hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn BergmanLab cisevol danmaclean Journal picks timhubbard operon neils
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted by 26 people hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony RockmanLab cis-regulatory-evolution dpollard caseybrown biomcgary xingxu idonaldson djkt
	Gene expression profiling by massively parallel sequencing [My Copy] Genome research In Genome Research, Vol. 18, No. 1. (21 January 2008), pp. 172-177. by Tatiana T. Torres, Muralidhar Metta, Birgit OttenwÃ¤lder, Christian SchlÃ¶tterer posted by 22 people GustavoLacerda chriscole oannes hzoltan manduca n00c druvus daed floatingpoint inesdesantiago orzenil guhjy jfr dchughes stsaft echinotrix giovanni caseybrown ghattem idonaldson ohara gracio
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted by 31 people hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick BenosLab gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin Khavkin's lab zwang
	BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Tim Hulsen, Jacob de Vlieg, Wynand Alkema posted by 25 people daveGerrard n00c jfr lscarafia jmeppley hessec GustavoLacerda Mycology stajich dswan polivares egonw ptrobajo guhjy jameswasmuth lptolik msampson pengchy natstreet druvus barriot Zephyrus BergmanLab cisevol thulsen
	High-Resolution Profiling of Histone Methylations in the Human Genome [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by A. Barski, S. Cuddapah, K. Cui, et al.T. Roh, D. Schones, Z. Wang, G. Wei, I. Chepelev, K. Zhao posted by 27 people viren4388 antonkratz rsaito darian tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 suizifish jochenG caseybrown raylim jernst JLab giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics Plantandetc ksha inesdesantiago dquest
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted by 16 people Vincent_Rouilly Bioinformatics tonamswish dswan fenghezi inesdesantiago idonaldson JLab BergmanLab polivares mkiyer druvus Mycology stajich humburg rschulz
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert Jansen, Remo Suppi posted by 31 people humburg bsamal darian Zephyrus daveGerrard sotacam cassj walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy shikin robertlischke chrisamiller BergmanLab cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted by 23 people jeremymiller zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy nolodie druvus aramesh2 kengg roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted by 11 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb caseybrown
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted by 32 people guhjy akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez Journal picks qayub fenghezi tonamswish Orengo Group Journal Picks robertrentzsch JLab BergmanLab polivares idonaldson rschulz CTCF Chromatin cvaldes danmaclean
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted by 15 people hzoltan hagechouchin443 ashraya stubrown cassj guhjy humburg ewilban1 gdb inesdesantiago fenghezi SIMR bioinformatics ghattem BergmanLab polivares
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted by 31 people jts darian jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon BergmanLab polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan Mycology stajich jbhiatt erikarner
	Bioinformatics challenges of new sequencing technology. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted by 37 people michaelbarton Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted by 17 people Yanno jfr jandot ewilban1 BergmanLab polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz paszkows
	The antisense transcriptomes of human cells. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1855-1857. by Yiping He, Bert Vogelstein, Victor E. Velculescu, Nickolas Papadopoulos, Kenneth W. Kinzler posted by 23 people rsaito guhjy gdb maximilianh xingxu hagechouchin443 caseybrown jfr fhalbrit inesdesantiago Koch_Lab skoch3 Roswell Cancer Crosstalk Zephyrus djkt strands balicea shikin coela ealloza diaz0058 gfliustu jbhiatt
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1. (January 2009), pp. 24-32. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted by 15 people aprickett suizifish gdb fenghezi clearbluespring rschulz xingxu CTCF sebastien_vigneau cassj caseybrown polivares inesdesantiago oelemento maximilianh
	Widespread changes in protein synthesis induced by microRNAs [My Copy] Nature, Vol. 455, No. 7209. (30 July 2008), pp. 58-63. by Matthias Selbach, Bjorn Schwanhausser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky posted by 31 people frohike hryk dandaman framancuso inesdesantiago lwaldron danaiancu fishtank dswan TRHvidsten pengchy valeriehilgers druvus guhjy martin-novak cajunsushi microRNA heliopais BTS-PT-AS-CS vertikalist jfr caizhiqiang psique megraw neils j_rodriguez erel10 maralena reyez mtagaya gdb
	A gene wiki for community annotation of gene function. [My Copy] PLoS biology, Vol. 6, No. 7. (8 July 2008), e175. by Jon W. Huss, Camilo Orozco, James Goodale, et al.Chunlei Wu, Serge Batalov, Tim J. Vickers, Faramarz Valafar, Andrew I. Su posted by 25 people sinhaa daforerog rolawren PaoloRomano thegoose2 xingxu fuwiki lptolik druvus Mycology stajich dullhunk tharris thomaskelder sjc inesdesantiago kintoki zwang ChrisEvelo reyez kristina VisionLab GMTurner barriot guhjy
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted by 9 people darian mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt epigenetics
	Positional distribution of human transcription factor binding sites. [My Copy] Nucleic acids research (25 October 2008) by Mark Koudritsky, Eytan Domany posted by 13 people bsamal daforerog jfr jforman SIMR bioinformatics ghattem BenosLab barriot fpattyn nklee maximilianh idonaldson nuin
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted by 20 people humburg hzoltan seb1 heliopais bozdagd katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem mdimon kmdaily caseybrown
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