Michal Joachimczak's Top Recommendations

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	Biologically Inspired Evolutionary Development [My Copy] Evolvable Systems: From Biology to Hardware (2003), pp. 99-106. by Sanjeev Kumar, Peter J. Bentley posted by 3 people wangbo GEB dlobo
	Evolution by gene duplication: an update [My Copy] Trends in Ecology and Evolution, Vol. 18, No. 6. (June 2003), pp. 292-298. by J. Zhang posted by 7 people mgomes wangbo dlobo GEB ruvido RamuAnandakrishnan BioNica
	DO WE NEED AN EXTENDED EVOLUTIONARY SYNTHESIS? [My Copy] Evolution Int J Org Evolution (9 October 2007) by Massimo Pigliucci posted by 3 people wangbo dlobo GEB
	A formal language-based approach in biology [My Copy] Comparative and Functional Genomics, Vol. 5, No. 1. (2004), pp. 91-94. by Marian Gheorghe, Victor Mitrana posted by 6 people wangbo dlobo GEB gemammr livingthingdan livingthing
	Robustness, evolvability, and neutrality. [My Copy] FEBS letters, Vol. 579, No. 8. (21 March 2005), pp. 1772-1778. by A. Wagner posted by 7 people chica wangbo GEB dlobo stevanspringer timflutre FAB-lab
	A Gene Network Model for Developing Cell Lineages [My Copy] Artificial Life, Vol. 11, No. 3. (2005), pp. 249-268. by Nicholas Geard, Janet Wiles posted by 3 people wangbo GEB dlobo
	The evolution of self-replicating computer organisms [My Copy] Physica D: Nonlinear Phenomena, Vol. 98, No. 1. (01 November 1996), pp. 111-127. by A. Pargellis posted by 3 people adamnellis dlobo GEB
	Introduction to Artificial Life [My Copy] (30 July 1999) by Christoph Adami posted by 4 people adamnellis jjray dlobo GEB
	Compositional pattern producing networks: A novel abstraction of development [My Copy] Genetic Programming and Evolvable Machines, Vol. 8, No. 2. (June 2007), pp. 131-162. by Stanley, Kenneth posted by 4 people adamnellis cwr dlobo GEB
	Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000206. by Merav Parter, Nadav Kashtan, Uri Alon posted by 12 people ynaito cambray rouault ocs djkt balicea shoshin rebeccamancy cabbagesofdoom GEB dlobo kentsis
	Evolution of Complex Modular Biological Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (8 February 2008), e23. by Arend Hintze, Christoph Adami posted by 9 people jeargle wangbo rouault saket grahamc laughcry rcaze alhufton phoenixzxl
	Linear and Context-Free Graph Grammars [My Copy] J. ACM, Vol. 19, No. 1. (1972), pp. 11-22. by T. Pavlidis posted by 2 people GEB dlobo
	A grammatical approach to self-organizing robotic systems [My Copy] Automatic Control, IEEE Transactions on, Vol. 51, No. 6. (19 June 2006), pp. 949-962. by E. Klavins, R. Ghrist, D. Lipsky posted by 2 people GEB dlobo
	The hierarchical structure of organisms: a scale and documentation of a trend in the maximum [My Copy] Paleobiology, Vol. 27, No. 2. (1 June 2001), pp. 405-423. by Daniel W. Mcshea posted by 2 people GEB dlobo
	Dynamics of unperturbed and noisy generalized Boolean networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 4. (21 October 2009), pp. 531-544. by Ch Darabos, M. Tomassini, M. Giacobini posted by 2 people GEB dlobo
	Mathematical Biology Education: Beyond Calculus [My Copy] Science, Vol. 325, No. 5940. (31 July 2009), pp. 542-543. by Raina Robeva, Reinhard Laubenbacher posted by 6 people flbarroso nicholasflann ajitkumar22 GEB dlobo Borelli
	Graphical applications of L-systems [My Copy] In Proceedings on Graphics Interface '86/Vision Interface '86 (1986), pp. 247-253. by P. Prusinkiewicz posted by 2 people GEB dlobo
	Morphological models of plant growth: Possibilities and ecological relevance [My Copy] Ecological Modelling, Vol. 75-76 (September 1994), pp. 299-308. by W. Kurth posted by 2 people GEB dlobo
	Principles of Animal Locomotion [My Copy] (25 November 2002) by R. Mcneill Alexander posted by 3 people robertmuil GEB dlobo
	Locomotion like a wheel? [My Copy] Nature, Vol. 365, No. 6446. (7 October 1993), pp. 495-495. by Robert Full, Kathleen Earls, Mary Wong, Roy Caldwell posted by 2 people GEB dlobo
	Evolving Complete Agents Using Artificial Ontogeny [My Copy] In In Morpho-functional Machines: The New Species (Designing Embodied Intelligence (2003), pp. 237-258. by Josh C. Bongard, Rolf Pfeifer posted by 2 people GEB dlobo
	Order or chaos in Boolean gene networks depends on the mean fraction of canalizing functions [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 384, No. 2. (15 October 2007), pp. 747-757. by F. Karlsson, M. Hornquist posted by 2 people GEB dlobo
	Computational embryology: past, present and future [My Copy] (2003), pp. 461-477. by Sanjeev Kumar, Peter J. Bentley posted by 2 people GEB dlobo
	Animal asymmetry. [My Copy] Current biology : CB, Vol. 19, No. 12. (23 June 2009) by A. R. Palmer posted by 2 people GEB dlobo
	Evolutionary form-finding of tensegrity structures [My Copy] In GECCO '05: Proceedings of the 2005 conference on Genetic and evolutionary computation (2005), pp. 3-10. by Chandana Paul, Hod Lipson, Francisco posted by 2 people GEB dlobo
	Illustrating Evolutionary Computation with Mathematica (The Morgan Kaufmann Series in Artificial Intelligence) [My Copy] (01 February 2001) by Christian Jacob posted by 2 people GEB dlobo
	Presented February 13, 1993 at the Symposium on Pattern Formation (SPF-93) at Claremont, California [My Copy] In Symposium on Pattern Formation - SPF-93 (1993) by Discovery O. Rewrite, John R. Koza posted by 2 people GEB dlobo
	Adaptive walks through fitness landscapes for early vascular land plants [My Copy] Am. J. Bot., Vol. 84, No. 1. (17 January 1997), 16. by K. J. Niklas posted by 2 people GEB dlobo
	On hopeful monsters, neutral networks and junk code in evolving L-systems [My Copy] In GECCO '08: Proceedings of the 10th annual conference on Genetic and evolutionary computation (2008), pp. 193-200. by Stefan Bornhofen, Claude Lattaud posted by 2 people GEB dlobo
	Life History Evolution of Virtual Plants: Trading Off Between Growth and Reproduction [My Copy] Parallel Problem Solving from Nature - PPSN IX (2006), pp. 808-817. by Stefan Bornhofen, Claude Lattaud posted by 3 people rebeccamancy GEB dlobo
	Evolution and Growth of Virtual Plants [My Copy] Advances in Artificial Life (2003), pp. 228-237. by Marc Ebner posted by 2 people GEB dlobo
	Coevolution Produces an Arms Race among Virtual Plants [My Copy] Genetic Programming (2002), pp. 114-170. by Marc Ebner, Adrian Grigore, Alexander Heffner, Jürgen Albert posted by 2 people GEB dlobo
	Evolution Programs Evolved [My Copy] In PPSN IV: Proceedings of the 4th International Conference on Parallel Problem Solving from Nature (1996), pp. 42-51. by Christian Jacob posted by 2 people GEB dlobo
	An L-System-Based Plant Modeling Language [My Copy] Applications of Graph Transformations with Industrial Relevance (2000), pp. 258-261. by Przemyslaw Prusinkiewicz, Jim Hanan, Radomír Měch posted by 2 people GEB dlobo
	An automata-theoretical model of the vegetative and flowering development of Hieracium murorum L. [My Copy] Biological Cybernetics, Vol. 24, No. 1. (1 March 1976), pp. 1-13. by Dinnus Frijters posted by 2 people GEB dlobo
	3D Architectural Modelling of Aerial Photomorphogenesis in White Clover (Trifolium repens L.) using L-systems [My Copy] Ann Bot, Vol. 85, No. 3. (1 March 2000), pp. 359-370. by H. Gautier, R. Mech, P. Prusinkiewicz, C. Varlet-Grancher posted by 2 people GEB dlobo
	Simulation of the clonal growth of Bostrychia radicans (Ceramiales-Rhodophyta) using Lindenmayer systems [My Copy] Biosystems, Vol. 42, No. 1. (March 1997), pp. 19-27. by L. Collado-Vides posted by 2 people GEB dlobo
	Derivation of L-system Models from Measurements of Biological Branching Structures Using Genetic Algorithms [My Copy] Developments in Applied Artificial Intelligence (2002), pp. 321-324. by Bian Runqiang, Phoebe Chen, Kevin Burrage, Jim Hanan, Peter Room, John Belward posted by 2 people GEB dlobo
	Using Genetic Algorithms to Improve the Visual Quality of Fractal Plants Generated with CSG-PL-Systems [My Copy] In In Proc. Fourth Intl. Conf. in Central Europe on Computer Graphics and Visualization 96, Vol. 2 (1996), pp. 367-376. by Christoph T. And, Christoph Traxler, Michael Gervautz posted by 2 people GEB dlobo
	Wildwood: the evolution of L-system plants for virtual environments [My Copy] Evolutionary Computation Proceedings, 1998. IEEE World Congress on Computational Intelligence., The 1998 IEEE International Conference on In Evolutionary Computation Proceedings, 1998. IEEE World Congress on Computational Intelligence., The 1998 IEEE International Conference on (1998), pp. 476-480. by K. J. Mock posted by 2 people GEB dlobo
	Genetic L-System Programming: Breeding and Evolving Artificial Flowers with Mathematica [My Copy] In In Proceedings of the First International Mathematica Symposium, Vol. 33976 (1995), pp. 215-222. by C. Jacob posted by 2 people GEB dlobo
	Feast and famine in plant genomes [My Copy] Genetica, Vol. 115, No. 1. (1 May 2002), pp. 37-47. by Jonathan F. Wendel, Richard C. Cronn, Spencer, James posted by 2 people GEB dlobo
	Plant Biomechanics: Using Shape to Steal Motion [My Copy] Vol. 19, No. 10. (26 May 2009), pp. R409-R410. by Charles W. Wolgemuth posted by 2 people GEB dlobo
	Computation Beyond the Turing Limit [My Copy] Science, Vol. 268, No. 5210. (28 April 1995), pp. 545-548. by Hava T. Siegelmann posted by 2 people GEB dlobo
	Organically Grown Architectures: Creating Decentralized, Autonomous Systems by Embryomorphic Engineering [My Copy] Organic Computing (2008), pp. 167-199. by René Doursat posted by 2 people GEB dlobo
	Twice as natural [My Copy] Nature, Vol. 414, No. 6861. (15 November 2001), pp. 255-255. by Richard E. Lenski posted by 2 people GEB dlobo
	On the robustness of update schedules in Boolean networks [My Copy] Biosystems (02 April 2009) by J. Aracena, E. Goles, A. Moreira, L. Salinas posted by 2 people GEB dlobo
	Natural Selection in Relation to Complexity [My Copy] Artificial Life, Vol. 14, No. 3. (July 2008), pp. 363-374. by Stanley N. Salthe posted by 3 people tomhebbron GEB dlobo
	Four Steps Toward Open-Ended Evolution [My Copy] In GECCO-99: Proceedings of the Genetic and Evolutionary Computation Conference (1999), pp. 1336-1343. by C. C. Maley posted by 1 person dlobo
	Counting and Classifying Attractors in High Dimensional Dynamical Systems [My Copy] Journal of Theoretical Biology, Vol. 183, No. 3. (07 December 1996), pp. 269-284. by R. Bagley posted by 2 people GEB dlobo
	Modeling stochasticity and robustness in gene regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i101-109. by Abhishek Garg, Kartik Mohanram, Alessandro Di Cara, Giovanni De Micheli, Ioannis Xenarios posted by 5 people pkm ruichu GEB dlobo jvb
	Evolution and complexity: the double-edged sword. [My Copy] Artificial life, Vol. 14, No. 3. (2008), pp. 325-344. by Thomas Miconi posted by 4 people rebeccamancy GEB dlobo tomhebbron
	Computation: The edge of reductionism [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 332-334. by P. M. Binder posted by 8 people rdiaz LGNR GEB dlobo apocapoc yse leliavski deanmalmgren
	The Evolution of Structural Design Through Artificial Embryogeny [My Copy] Artificial Life, 2007. ALIFE '07. IEEE Symposium on In Artificial Life, 2007. ALIFE '07. IEEE Symposium on (2007), pp. 425-432. by T. Kowaliw, P. Grogono, N. Kharma posted by 3 people dlobo GEB josedavid
	Early evolution of symmetry and polarity in metazoan body plans [My Copy] Comptes Rendus Biologies, Vol. 332, No. 2-3. (February 2009), pp. 184-209. by Michaël Manuel posted by 2 people GEB dlobo
	Evolutionary design of Evolutionary Algorithms [My Copy] Genetic Programming and Evolvable Machines, Vol. 10, No. 3. (1 September 2009), pp. 263-306. by Laura Dioşan, Mihai Oltean posted by 8 people GEB dlobo petrposik Shirakawa tomhebbron Metaheuristics EvolutionaryComputation nojhan
	Random Networks of Automata: A Simple Annealed Approximation [My Copy] EPL (Europhysics Letters), Vol. 1, No. 2. (1986), pp. 45-49. by B. Derrida, Y. Pomeau posted by 3 people GEB dlobo kinop
	Through the Interaction of Neutral and Adaptive Mutations, Evolutionary Search Finds a Way [My Copy] Artif. Life, Vol. 12, No. 4. (2006), pp. 525-551. by Tina Yu, Julian F. Miller posted by 4 people Shirakawa rebeccamancy GEB dlobo
	On the Utility of Redundant Encodings in Mutation-Based Evolutionary Search [My Copy] Parallel Problem Solving from Nature — PPSN VII (2002), pp. 88-98. by Joshua Knowles, Richard Watson posted by 2 people GEB dlobo
	Size and shape in ontogeny and phylogeny [My Copy] Paleobiology, Vol. 5, No. 3. (1 July 1979), pp. 296-317. by Pere Alberch, Stephen J. Gould, George F. Oster, David B. Wake posted by 2 people GEB dlobo
	Heterochrony and Artificial Embryogeny: A Method for Analyzing Artificial Embryogenies Based on Developmental Dynamics. [My Copy] Artificial life (14 January 2009) by Artur Matos, Reiji Suzuki, Takaya Arita posted by 2 people GEB dlobo
	Some operations preserving primitivity of words [My Copy] Theoretical Computer Science (03 February 2009) by Jürgen Dassow, Gema M. Martín, Francisco J. Vico posted by 1 person dlobo
	Fundamentals of edge-label controlled graph grammars [My Copy] In Proceedings of the 3rd International Workshop on Graph-Grammars and Their Application to Computer Science (1987), pp. 411-426. by Michael G. Main, Grzegorz Rozenberg posted by 2 people dlobo GEB
	Automated discovery and optimization of large irregular tensegrity structures [My Copy] Computers & Structures, Vol. 87, No. 5-6. (March 2009), pp. 368-379. by John Rieffel, Francisco Valero-Cuevas, Hod Lipson posted by 3 people GEB dlobo jenda_z
	Structure and dynamics of a gene network model incorporating small RNAs [My Copy] Evolutionary Computation, 2003. CEC '03. The 2003 Congress on In Evolutionary Computation, 2003. CEC '03. The 2003 Congress on, Vol. 1 (2003), pp. 199-206 Vol.1. by N. Geard, J. Wiles posted by 2 people GEB dlobo
	Parallelism and evolutionary algorithms [My Copy] IEEE Transactions on Evolutionary Computation, Vol. 6 (2002), pp. 443-462. by M. Tomassini posted by 2 people GEB dlobo
	How to Build a Beowulf: A Guide to the Implementation and Application of PC Clusters (Scientific and Engineering Computation) [My Copy] (28 May 1999) by Thomas Sterling, Donald J. Becker, Daniel F. Savarese posted by 2 people GEB dlobo
	Artificial neural networks on massively parallel computer hardware [My Copy] Neurocomputing, Vol. 57 (2004), pp. 135-150. by Udo Seiffert posted by 2 people GEB dlobo
	Distributed Computing: Principles, Algorithms, and Systems [My Copy] (19 May 2008) by Ajay D. Kshemkalyani, Mukesh Singhal posted by 2 people GEB dlobo
	Toward Automatic Data Distribution for Migrating Computations [My Copy] Parallel Processing, 2007. ICPP 2007. International Conference on In Parallel Processing, 2007. ICPP 2007. International Conference on (2007), pp. 27-27. by Lei Pan, Jingling Xue, Ming K. Lai posted by 2 people GEB dlobo
	Computational Modeling Of Gene Regulatory Networks -- A Primer [My Copy] (13 August 2008) by Hamid Bolouri posted by 2 people GEB dlobo
	Drug target validation and identification of secondary drug target effects using DNA microarrays [My Copy] Nat Med, Vol. 4, No. 11. (November 1998), pp. 1293-1301. by Matthew J. Marton, Joseph L. Derisi, Holly A. Bennett, et al.Vishwanath R. Iyer, Michael R. Meyer, Christopher J. Roberts, Roland Stoughton, Julja Burchard, David Slade, Hongyue Dai, Douglas E. Bassett, Leland H. Hartwell, Patrick O. Brown, Stephen H. Friend posted by 2 people GEB dlobo
	Shapes in the shadow: evolutionary dynamics of morphogenesis. [My Copy] Artificial life, Vol. 6, No. 1. (2000), pp. 85-101. by P. Hogeweg posted by 2 people GEB dlobo
	String variable grammar: A logic grammar formalism for the biological language of DNA [My Copy] The Journal of Logic Programming, Vol. 24, No. 1-2. (August 1995), pp. 73-102. by D. Searls posted by 2 people GEB dlobo
	Formal grammars for intermolecular structure [My Copy] In INBS '95: Proceedings of the First International Symposium on Intelligence in Neural and Biological Systems (INBS'95) (1995) by D. B. Searls posted by 2 people GEB dlobo
	RNA modeling using Gibbs sampling and stochastic context free grammars [My Copy] In In ISMB-94, Menlo Park, CA, Vol. 2 (1994), pp. 138-146. by Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, Saira I. Mian, Harry Noller posted by 3 people gemammr GEB dlobo
	Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model [My Copy] Theoretical Computer Science, Vol. 298, No. 1. (04 April 2003), pp. 235-251. by T. Akutsu posted by 2 people GEB dlobo
	Temporal constraints in the logical analysis of regulatory networks [My Copy] Theoretical Computer Science, Vol. 391, No. 3. (14 February 2008), pp. 258-275. by H. Siebert, A. Bockmayr posted by 2 people GEB dlobo
	GemCell: A generic platform for modeling multi-cellular biological systems [My Copy] Theoretical Computer Science, Vol. 391, No. 3. (14 February 2008), pp. 276-290. by H. Amirkroll, A. Sadot, I. Cohen, D. Harel posted by 2 people GEB dlobo
	The evolutionary dynamics of evolvability in a gene network model [My Copy] Journal of Evolutionary Biology, Vol. 9999, No. 9999. (2008) by J. Draghi, G. P. Wagner posted by 3 people dlobo josedavid GEB
	Operations and language generating devices suggested by the genome evolution [My Copy] Theoretical Computer Science, Vol. 270, No. 1-2. (6 January 2002), pp. 701-738. by J. Dassow posted by 2 people GEB dlobo
	The Essential Motif that wasn't there: Topological and Lesioning Analysis of Evolved Genetic Regulatory Networks [My Copy] Artificial Life, 2007. ALIFE '07. IEEE Symposium on In Artificial Life, 2007. ALIFE '07. IEEE Symposium on (2007), pp. 69-76. by J. F. Knabe, C. L. Nehaniv, M. J. Schilstra posted by 2 people GEB dlobo
	A maximum path length pumping lemma for edge-replacement languages [My Copy] Fundamentals of Computation Theory (1993), pp. 342-351. by Sabine Kuske posted by 2 people GEB dlobo
	A pumping lemma for context-free graph languages [My Copy] Graph-Grammars and Their Application to Computer Science and Biology (1979), pp. 270-283. by Hans-Jörg Kreowski posted by 2 people GEB dlobo
	Characteristics of graph languages generated by edge replacement [My Copy] Theoretical Computer Science, Vol. 51, No. 1-2. (1987), pp. 81-115. by A. Habel posted by 2 people GEB dlobo
	Obtaining multiple distinct solutions with genetic algorithm niching methods [My Copy] Parallel Problem Solving from Nature — PPSN IV (1996), pp. 451-460. by Alasdair Turner, David Corne, Graeme Ritchie, Peter Ross posted by 2 people GEB dlobo
	A tutorial and bibliographical survey on graph grammars [My Copy] Graph-Grammars and Their Application to Computer Science and Biology (1979), pp. 70-126. by Manfred Nagl posted by 2 people GEB dlobo
	Generating r-regular graphs [My Copy] Discrete Applied Mathematics, Vol. 129, No. 2-3. (01 August 2003), pp. 329-343. by G. Ding posted by 2 people GEB dlobo
	Recursive Generation of 5-Regular Planar Graphs [My Copy] WALCOM: Algorithms and Computation (2009), pp. 129-140. by Mahdieh Hasheminezhad, Brendan McKay, Tristan Reeves posted by 2 people GEB dlobo
	Generating all 3-connected 4-regular planar graphs from the octahedron graph [My Copy] Journal of Graph Theory, Vol. 17, No. 5. (1993), pp. 613-620. by H. J. Broersma, A. J. W. Duijvestijn, F. Göbel posted by 2 people GEB dlobo
	Generating all planar 0-,1-,2-,3-connected graphs [My Copy] Graphtheoretic Concepts in Computer Science (1981), pp. 379-382. by Peter Läuchli posted by 2 people GEB dlobo
	Universal Self-Replication Using Graph Grammars [My Copy] MEMS, NANO, and Smart Systems, International Conference on, Vol. 0 (2004), pp. 198-204. by Eric Klavins posted by 2 people GEB dlobo
	Rigidity and scene analysis [My Copy] (1997), pp. 893-916. by Walter Whiteley posted by 2 people GEB dlobo
	Stability of the Kauffman model [My Copy] Physical Review E, Vol. 65, No. 1. (Dec 2001), 016129. by Sven Bilke, Fredrik Sjunnesson posted by 2 people GEB dlobo
	Parallel and Sequential Computation on Boolean Networks [My Copy] Theor. Comput. Sci., Vol. 40 (1985), pp. 275-300. by Françoise F. Soulié posted by 2 people GEB dlobo
	Predicting the Evolution of Sex on Complex Fitness Landscapes [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (18 September 2009), e1000510. by Dusan Misevic, Roger D. Kouyos, Sebastian Bonhoeffer posted by 5 people maren GEB dlobo scmelton bpcusack
	Graph Transformation for Specification and Programming [My Copy] Science of Computer Programming, Vol. 34 (1996), pp. 1-54. by Marc Andries, Gregor Engels, Annegret Habel, et al.Berthold Hoffmann, Hans-Jörg Kreowski, Sabine Kuske, Detlef Plump, Andy Schürr, Gabriele Taentzer posted by 2 people GEB dlobo
	From graphs to tensegrity structures: Geometric and symbolic approaches [My Copy] (13 Mar 2006) by Miguel de Guzmán, David Orden posted by 2 people GEB dlobo
	Geometrical reasoning based on attributed graph grammar for prismatic parts [My Copy] IIE Transactions, Vol. 31, No. 1. (1 January 1999), pp. 61-74. by David Ben-arieh posted by 2 people GEB dlobo
	Geometric representation of graphs in low dimension [My Copy] (31 Jul 2007) by L. Sunil Chandran, Mathew C. Francis, Naveen Sivadasan posted by 2 people GEB dlobo