Eugene Scherba's Top Recommendations

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	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted by 6 people hzoltan Bioinformatics - CRUK Stew torfinnnome guhjy fpattyn
	Transcriptome sequencing to detect gene fusions in cancer [My Copy] Nature, Vol. 458, No. 7234. (11 January 2009), pp. 97-101. by Christopher A. Maher, Chandan Kumar-Sinha, Xuhong Cao, et al.Shanker Kalyana-Sundaram, Bo Han, Xiaojun Jing, Lee Sam, Terrence Barrette, Nallasivam Palanisamy, Arul M. Chinnaiyan posted by 18 people hzoltan manduca stubrown ajbattle frohike torfinnnome jessopher guhjy jfr burak myzhang inesdesantiago dswan fenghezi jbhiatt mtagaya abizar xingxu
	Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. [My Copy] Genome research, Vol. 19, No. 4. (April 2009), pp. 521-532. by Melissa J. Fullwood, Chia-Lin L. Wei, Edison T. Liu, Yijun Ruan posted by 21 people hzoltan cthachuk GustavoLacerda jandot inesdesantiago Chinnaiyan Lab mkiyer rschulz guhjy lp2 natstreet druvus absterga coela hpaces orzenil idoerg behindtherabbit nuin djkt jbhiatt
	Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3264-3269. by Moran Yassour, Tommy Kaplan, Hunter B. Fraser, et al.Joshua Z. Levin, Jenna Pfiffner, Xian Adiconis, Gary Schroth, Shujun Luo, Irina Khrebtukova, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman, Aviv Regev posted by 10 people hzoltan fstrozzi GustavoLacerda stubrown jfr Mycology stajich GeeSharpMinor jmcq provero
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted by 26 people hzoltan bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi stajich Mycology semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 47 people darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted by 20 people operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose danmaclean Mycology stajich natstreet neils druvus GustavoLacerda Journal picks avilella
	Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes [My Copy] Nucl. Acids Res., Vol. 34, No. 12. (13 July 2006), e84. by Patrick Ng, Jack J. S. Tan, Hong S. Ooi, et al.Yen L. Lee, Kuo P. Chiu, Melissa J. Fullwood, Kandhadayar G. Srinivasan, Clotilde Perbost, Lei Du, Wing-Kin Sung, Chia-Lin Wei, Yijun Ruan posted by 5 people darian torfinnnome floatingpoint guhjy bozdagd
	Automated generation of heuristics for biological sequence comparison. [My Copy] BMC bioinformatics, Vol. 6, No. 1. (2005), 31. by Guy St S. Slater, Ewan Birney posted by 13 people rshe darian mhamada orzenil jmcq druvus waszak indigoviolet massivemayhem wenhan EisenLab hpaces marti
	edgeR: a Bioconductor package for differential expression analysis of digital gene expression data [My Copy] Bioinformatics (11 November 2009), btp616. by Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth posted by 3 people heliopais hzoltan druvus
	TIGERA: A New Tool for Illumina Gene Expression Reads Analysis [My Copy] Bioinformatics, 2009 Ohio Collaborative Conference, Vol. 0 (2009), pp. 37-41. by Xiaodong Bai, Parwinder S. Grewal posted by 2 people hzoltan heliopais
	Identifiability of isoform deconvolution from junction arrays and RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3056-3059. by David Hiller, Hui Jiang, Weihong Xu, Wing H. Wong posted by 8 people Journal picks jwfoley djkt hzoltan cajunsushi SIMR bioinformatics ghattem GeeSharpMinor
	Deep sequencing of the zebrafish transcriptome response to mycobacterium infection [My Copy] Molecular Immunology (24 July 2009) by Zoltán Hegedűs, Anna Zakrzewska, Vilmos C. Ágoston, et al.Anita Ordas, Péter Rácz, Mátyás Mink, Herman P. Spaink, Annemarie H. Meijer posted by 2 people hzoltan ThomasDOtto
	Transcriptome analysis by strand-specific sequencing of complementary DNA [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), e123. by Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, et al.Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, Alexey Soldatov posted by 8 people hzoltan inesdesantiago dswan Mycology stajich guhjy SIMR bioinformatics ghattem
	A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus <italic>Salmonella</italic> Typhi [My Copy] PLoS Genet, Vol. 5, No. 7. (17 July 2009), e1000569. by Timothy T. Perkins, Robert A. Kingsley, Maria C. Fookes, et al.Paul P. Gardner, Keith D. James, Lu Yu, Samuel A. Assefa, Miao He, Nicholas J. Croucher, Derek J. Pickard, Duncan J. Maskell, Julian Parkhill, Jyoti Choudhary, Nicholas R. Thomson, Gordon Dougan posted by 8 people hzoltan stubrown fenghezi SIMR bioinformatics ghattem GeeSharpMinor Journal picks ppgardne
	A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level [My Copy] Nucl. Acids Res., Vol. 37, No. 10. (1 June 2009), e75. by Sika Zheng, Liang Chen posted by 8 people hzoltan debasis woodson8 guhjy GeeSharpMinor neils SIMR bioinformatics ghattem
	miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W68-76. by Michael Hackenberg, Martin Sturm, David Langenberger, Juan M. Falcon-Perez, Ana M. Aransay posted by 15 people hzoltan druvus heliopais orzenil fishtank microRNA tonamswish Bioinformatics dswan natstreet guhjy fenghezi pengchy ealloza daforerog
	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted by 25 people hzoltan Zephyrus antonkratz bertelsen frohike natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza RockmanLab dpollard hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt Mycology stajich
	Tiny RNAs associated with transcription start sites in animals. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 572-578. by Ryan J. Taft, Evgeny A. Glazov, Nicole Cloonan, et al.Cas Simons, Stuart Stephen, Geoffrey J. Faulkner, Timo Lassmann, Alistair R. Forrest, Sean M. Grimmond, Kate Schroder, Katharine Irvine, Takahiro Arakawa, Mari Nakamura, Atsutaka Kubosaki, Kengo Hayashida, Chika Kawazu, Mitsuyoshi Murata, Hiromi Nishiyori, Shiro Fukuda, Jun Kawai, Carsten O. Daub, David A. Hume, Harukazu Suzuki, Valerio Orlando, Piero Carninci, Yoshihide Hayashizaki, John S. Mattick posted by 16 people hzoltan inesdesantiago guhjy jfr gdb xingxu fpattyn galka8_diploma tonamswish antonkratz mtagaya fenghezi ilyashl jbhiatt TRHvidsten natstreet
	Estimating accuracy of RNA-Seq and microarrays with proteomics. [My Copy] BMC genomics, Vol. 10, No. 1. (16 April 2009), 161. by Xing Fu, Ning Fu, Song Guo, et al.Zheng Yan, Ying Xu, Hao Hu, Corinna Menzel, Wei Chen, Yixue Li, Rong Zeng, Philipp Khaitovich posted by 9 people hzoltan sjcockell GustavoLacerda guhjy burak dswan Mycology stajich shikin
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted by 17 people hzoltan jfr inesdesantiago heliopais manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	Expression profiling of microRNAs by deep sequencing [My Copy] Brief Bioinform, Vol. 10, No. 5. (30 March 2009), pp. bbp019-497. by Chad J. Creighton, Jeffrey G. Reid, Preethi H. Gunaratne posted by 11 people hzoltan fishtank guhjy reyez TRHvidsten microRNA heliopais natstreet druvus nuin cassj
	Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 218-223. by Nicholas T. Ingolia, Sina Ghaemmaghami, John R. S. Newman, Jonathan S. Weissman posted by 22 people hzoltan jwfoley yyfwuhan gbloeb guhjy RockmanLab NYU Journal Review dpollard fenghezi gangcai idonaldson coela fpattyn jbhiatt kshundyak absterga myzhang bertelsen VGreiff provero microbiology_nijmegen kinestetika
	Comparison of small n statistical tests of differential expression applied to microarrays. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Carl Murie, Owen Woody, Anna Y. Lee, Robert Nadon posted by 13 people hzoltan zufar guhjy daforerog rdiaz renatomilani Bioinformatics dswan Zephyrus behindtherabbit SIMR bioinformatics ghattem druvus
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted by 32 people hzoltan jwfoley rsaito greg Chinnaiyan Lab mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga JLab cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada
	Repeatability of published microarray gene expression analyses. [My Copy] Nature genetics, Vol. 41, No. 2. (28 February 2009), pp. 149-155. by John P. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedín C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted by 23 people hzoltan Roswell Cancer Crosstalk heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows
	Small silencing RNAs: an expanding universe [My Copy] Nat Rev Genet, Vol. 10, No. 2. (01 February 2009), pp. 94-108. by Megha Ghildiyal, Phillip D. Zamore posted by 21 people NicolSiegel hzoltan tonamswish Small RNAs sebastien_vigneau gwallau guhjy timflutre galka8_diploma jbhiatt idonaldson xingxu natstreet mhamada microRNA heliopais misonneh valeriehilgers diaz0058 lp2 druvus
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted by 24 people hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Roswell Cancer Crosstalk Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar
	Next-generation sequencing: applications beyond genomes. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 5. (October 2008), pp. 1091-1096. by S. Marguerat, B. T. Wilhelm, J. Bähler posted by 5 people hzoltan cbouyio kiekyon guhjy Pascalichouchou
	Small-sample estimation of negative binomial dispersion, with applications to SAGE data. [My Copy] Biostatistics (Oxford, England), Vol. 9, No. 2. (April 2008), pp. 321-332. by Mark D. Robinson, Gordon K. Smyth posted by 4 people hzoltan dandaman floatingpoint guhjy
	Applications of next-generation sequencing technologies in functional genomics [My Copy] Genomics, Vol. 92, No. 5. (11 November 2008), pp. 255-264. by O. Morozova, M. Marra posted by 20 people hzoltan heliopais viren4388 fishtank Journal picks jandot lusk natstreet druvus floatingpoint usagi-kirin SIMR bioinformatics malcook abizar reyez dchughes xingxu giovenko GeeSharpMinor guhjy
	Discovering microRNAs from deep sequencing data using miRDeep [My Copy] Nat Biotech, Vol. 26, No. 4. (April 2008), pp. 407-415. by Marc R. Friedlander, Wei Chen, Catherine Adamidi, et al.Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky posted by 17 people hzoltan thegoose2 natstreet fishtank ealloza GustavoLacerda iris42 C. elegans / WormBase tharris tmmurali giovanni stajich Mycology jfr heliopais microRNA gdb
	Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. [My Copy] Genome research, Vol. 18, No. 4. (19 April 2008), pp. 610-621. by Ryan D. Morin, Michael D. O'Connor, Malachi Griffith, et al.Florian Kuchenbauer, Allen Delaney, Anna-Liisa L. Prabhu, Yongjun Zhao, Helen McDonald, Thomas Zeng, Martin Hirst, Connie J. Eaves, Marco A. Marra posted by 14 people hzoltan giovenko ealloza fishtank inesdesantiago GustavoLacerda microRNA heliopais stajich Mycology maralena jfr caseybrown gdb
	Moderated statistical tests for assessing differences in tag abundance [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2881-2887. by Mark D. Robinson, Gordon K. Smyth posted by 12 people hzoltan dandaman daed debasis gdb thegoose heliopais fishtank floatingpoint guhjy rdiaz ghattem
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted by 23 people hzoltan zufar srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar SIMR bioinformatics ghattem jfr ealloza shigepong BioinfoCIPF heliopais guhjy diging_data BTS-PT-AS-CS
	Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species. [My Copy] BMC genomics, Vol. 10, No. 1. (24 November 2009), 555. by Diana Bellin, Alberto Ferrarini, Antonio Chimento, et al.Olaf Kaiser, Natasha Levenkova, Pascal Bouffard, Massimo Delledonne posted by 3 people torfinnnome GeeSharpMinor druvus
	Microdroplet-based PCR enrichment for large-scale targeted sequencing. [My Copy] Nature biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted by 5 people Reunions Biblio Spectro-IAB chvlyl torfinnnome Journal picks qayub
	MALDI Profiling of Human Lung Cancer Subtypes [My Copy] PLoS ONE, Vol. 4, No. 11. (5 November 2009), e7731. by Angelo Gámez-Pozo, Iker Sánchez-Navarro, Manuel Nistal, et al.Enrique Calvo, Rosario Madero, Esther Díaz, Emilio Camafeita, Javier de Castro, Juan A. López, Manuel González-Barón, Enrique Espinosa, Juan Fresno Vara posted by 2 people frohike torfinnnome
	A unique, consistent identifier for alternatively spliced transcript variants. [My Copy] PloS one, Vol. 4, No. 10. (28 October 2009), e7631. by Alberto Riva, Graziano Pesole posted by 3 people ongenetics booker torfinnnome
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted by 6 people burak torfinnnome Journal picks qayub chvlyl frohike
	Next-generation gap [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S2-S5. by John D. McPherson posted by 9 people pst owenlancaster torfinnnome Vincent_Rouilly seb1 idoerg oannes74 heliopais GeeSharpMinor
	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted by 7 people burak torfinnnome operon wilbur kshameer renatomilani druvus
	Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts. [My Copy] Genome biology, Vol. 10, No. 10. (16 October 2009), R115. by Joshua Z. Levin, Michael F. Berger, Xian Adiconis, et al.Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A. Garraway, Andreas Gnirke posted by 4 people pst jwfoley Journal picks torfinnnome
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted by 7 people Orengo Group Journal Picks sillitoe rcr1991 trogdor rdiaz druvus torfinnnome
	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. [My Copy] Bioinformatics (Oxford, England) (6 October 2009), btp579. by Jacob F. Degner, John C. Marioni, Athma A. Pai, et al.Joseph K. Pickrell, Everlyne Nkadori, Yoav Gilad, Jonathan K. Pritchard posted by 3 people papamicd torfinnnome heliopais
	BASE - 2nd generation software for microarray data management and analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 330. by Johan V. Christersson, Nicklas Nordborg, Martin Svensson, Jari Hakkinen posted by 7 people dswan Orengo Group Journal Picks sillitoe heliopais daforerog druvus torfinnnome
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted by 16 people misonneh pst jwfoley stubrown chvlyl giovenko frohike brianb Zephyrus jsuchit Chinnaiyan Lab mkiyer torfinnnome Journal picks merpublic djkt
	High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity [My Copy] BMC Genetics, Vol. 10, No. 1. (05 October 2009), 63. by Weiyin Zhou, Margaret Calciano, Heather Jordan, et al.Michael Brenner, Seth Johnson, Darong Wu, Lin Lei, Diego Pallares, Pascale Beurdeley, Fabien Rouet, Pritmohinder Gill, Laurent Bracco, Cyril Soucaille, Richard Einstein posted by 2 people GeeSharpMinor torfinnnome
	Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3151-3157. by Hojung Nam, Bong C. Chung, Younghoon Kim, KiYoung Lee, Doheon Lee posted by 4 people torfinnnome dswan brianb neils
	A first principles approach to differential expression in microarray data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 292. by Robert Rubin posted by 6 people dswan brianb neils renatomilani rdiaz torfinnnome
	Distinct High-Profile Methylated Genes in Colorectal Cancer [My Copy] PLoS ONE, Vol. 4, No. 9. (11 September 2009), e7012. by Pooneh Mokarram, Krishan Kumar, Hassan Brim, et al.Fakhraddin Naghibalhossaini, Mehdi Saberi-firoozi, Mehdi Nouraie, Robert Green, Ed Lee, Duane T. Smoot, Hassan Ashktorab posted by 1 person torfinnnome
	Analysis of SNPs and Haplotypes in Vitamin D Pathway Genes and Renal Cancer Risk [My Copy] PLoS ONE, Vol. 4, No. 9. (15 September 2009), e7013. by Sara Karami, Paul Brennan, Philip S. Rosenberg, et al.Marie Navratilova, Dana Mates, David Zaridze, Vladimir Janout, Helena Kollarova, Vladimir Bencko, Vsevolod Matveev, Neonila Szeszenia-Dabrowska, Ivana Holcatova, Meredith Yeager, Stephen Chanock, Idan Menashe, Nathaniel Rothman, Wong-Ho Chow, Paolo Boffetta, Lee E. Moore posted by 1 person torfinnnome
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted by 8 people carolep jsatkosk daforerog djkt shikin dswan rdiaz torfinnnome
	Characterization of a QTL region affecting clinical mastitis and protein yield on BTA6 [My Copy] Animal Genetics, Vol. 9999, No. 9999. (2009) by H. Nilsen, H. G. Olsen, B. Hayes, et al.T. Nome, E. Sehested, M. Svendsen, T. H. E. Meuwissen, S. Lien posted by 1 person torfinnnome
	Casein haplotypes and their association with milk production traits in Norwegian Red cattle [My Copy] Genetics Selection Evolution, Vol. 41, No. 1. (2009), 24. by Heidi Nilsen, Hanne Olsen, Ben Hayes, et al.Erling Sehested, Morten Svendsen, Torfinn Nome, Theo Meuwissen, Sigbjorn Lien posted by 1 person torfinnnome
	Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing [My Copy] PLoS ONE, Vol. 4, No. 8. (17 August 2009), e6659. by Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, et al.Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis posted by 2 people torfinnnome thegoose
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted by 42 people singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari Orengo Group Journal Picks robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell Journal picks jandot megraw leliavski frohike Neuroblastoma fpattyn jhyang
	The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2730-2731. by John W. Nicol, Gregg A. Helt, Steven G. Blanchard, Archana Raja, Ann E. Loraine posted by 13 people Bioinformatics Core Service jforment ronbun_2009au dokky inesdesantiago daforerog torfinnnome idonaldson pkonings sebastien_vigneau guhjy natstreet druvus
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted by 13 people fstrozzi manduca Journal picks djkt rdiaz sjcockell torfinnnome walshtp nuin natstreet druvus Orengo Group Journal Picks ollieredfernwork
	Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 9. (28 September 2009), pp. 1616-1621. by Daniel Summerer, Haiguo Wu, Bettina Haase, et al.Yang Cheng, Nadine Schracke, Cord F. StÃ¤hler, Mark S. Chee, Peer F. StÃ¤hler, Markus Beier posted by 5 people xingxu torfinnnome guhjy jbhiatt natstreet
	Chimeric transcript discovery by paired-end transcriptome sequencing. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (10 July 2009) by Christopher A. Maher, Nallasivam Palanisamy, John C. Brenner, et al.Xuhong Cao, Shanker Kalyana-Sundaram, Shujun Luo, Irina Khrebtukova, Terrence R. Barrette, Catherine Grasso, Jindan Yu, Robert J. Lonigro, Gary Schroth, Chandan Kumar-Sinha, Arul M. Chinnaiyan posted by 3 people torfinnnome guhjy jasontsai
	GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2188-2193. by Te-Chin Chu, Tsunglin Liu, D. T. Lee, Greg C. Lee, Arthur C. Shih posted by 3 people torfinnnome nlapalu jmeppley
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	A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis [My Copy] Molecular Cancer, Vol. 8, No. 1. (19 January 2009), 5. by Rolf Skotheim, Gard Thomassen, Marthe Eken, et al.Guro Lind, Francesca Micci, Franclim Ribeiro, Nuno Cerveira, Manuel Teixeira, Sverre Heim, Torbjorn Rognes, Ragnhild Lothe posted by 1 person torfinnnome
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	Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes [My Copy] Genes & Development, Vol. 23, No. 12. (15 June 2009), pp. 1379-1386. by Benjamin J. Blencowe, Sidrah Ahmad, Leo J. Lee posted by 7 people cthachuk heliopais woodson8 guhjy fenghezi SIMR bioinformatics huali
	Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer. [My Copy] Nucleic acids research (16 October 2008) by Liqiang Xi, Andrew Feber, Vanita Gupta, et al.Maoxin Wu, Andrew D D. Bergemann, Rodney J J. Landreneau, Virginia R R. Litle, Arjun Pennathur, James D D. Luketich, Tony E E. Godfrey posted by 2 people jfr cthachuk
	Fusion and Fission of Genes Define a Metric between Fungal Genomes [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000200. by Pascal Durrens, Macha Nikolski, David Sherman posted by 8 people jameswasmuth skembel cthachuk taguchi Mycology stajich iSEEM djkt
	The Bloomier filter: an efficient data structure for static support lookup tables [My Copy] In SODA '04: Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms (2004), pp. 30-39. by Bernard Chazelle, Joe Kilian, Ronitt Rubinfeld, Ayellet Tal posted by 2 people Scis0000002 cthachuk
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	An optimal Bloom filter replacement [My Copy] In SODA '05: Proceedings of the sixteenth annual ACM-SIAM symposium on Discrete algorithms (2005), pp. 823-829. by Anna Pagh, Rasmus Pagh, Srinivasa S. Rao posted by 2 people cthachuk toba
	More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature [My Copy] Nucl. Acids Res., Vol. 35, No. 2. (28 January 2007), pp. 433-440. by Istvan Ladunga posted by 3 people puranjoy_b mtagaya cthachuk
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	Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities [My Copy] Nature Biotechnology, Vol. 24, No. 11. (24 September 2006), pp. 1429-1435. by Michael F. Berger, Anthony A. Philippakis, Aaron M. Qureshi, Fangxue S. He, Preston W. Estep, Martha L. Bulyk posted by 13 people seb1 absterga cambray aalibes jfr dpollard stsaft maldi cthachuk olympos EisenLab yevishere kristallreiner
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	Secondary Structure Prediction of Interacting RNA Molecules [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001. by Mirela Andronescu, Zhi C. Zhang, Anne Condon posted by 8 people rb_india marcius eckart_bindewald Hosna cthachuk physics BioinfoCIPF SGU-CIPF
	The approximability of the String Barcoding problem [My Copy] Algorithms for Molecular Biology, Vol. 1 (08 August 2006), 12. by Giuseppe Lancia, Romeo Rizzi posted by 1 person cthachuk
	Revolutions in RNA Secondary Structure Prediction [My Copy] Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532. by David H. Mathews posted by 15 people rb_india bmduggan heliopais marcius arcticrasta penka Eonwe cthachuk emidio_capriotti physics BioinfoCIPF SGU-CIPF maralena winterschlaefer austin
	Analysis of internal loops within the RNA secondary structure in almost quadratic time. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 11. (1 June 2006), pp. 1317-1324. by A. Y. Ogurtsov, S. A. Shabalina, A. S. Kondrashov, M. A. Roytberg posted by 5 people hendrik85 marcius cthachuk BioinfoCIPF SGU-CIPF
	Predicting RNA secondary structure by free energy minimization [My Copy] Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta) (May 2006), pp. 1-9. by David Mathews posted by 10 people rb_india marcius condon Hosna hesam cthachuk apop beta BioinfoCIPF SGU-CIPF
	OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach [My Copy] Nucl. Acids Res., Vol. 31, No. 12. (15 June 2003), pp. 3057-3062. by Jean-Marie Rouillard, Michael Zuker, Erdogan Gulari posted by 6 people guxiyou stsaft malcook cthachuk nedwards yoanjacquemin
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	RNAsoft: A suite of RNA secondary structure prediction and design software tools. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3416-3422. by M. Andronescu, R. Aguirre-Hernández, A. Condon, H. H. Hoos posted by 11 people marcius eckart_bindewald stsaft Hosna cthachuk mgaldzic stajich BioinfoCIPF SGU-CIPF CHIP Mycology
	A new algorithm for RNA secondary structure design. [My Copy] J Mol Biol, Vol. 336, No. 3. (20 February 2004), pp. 607-624. by M. Andronescu, A. P. Fejes, F. Hutter, H. H. Hoos, A. Condon posted by 11 people gzm55 marcius eckart_bindewald gane5h cthachuk mgaldzic smallbadguy 18th-century_history_culture_and_society BioinfoCIPF SGU-CIPF CHIP
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	Space/time trade-offs in hash coding with allowable errors [My Copy] Commun. ACM, Vol. 13, No. 7. (July 1970), pp. 422-426. by Burton H. Bloom posted by 14 people burt tnhh ecronin lillejul cthachuk diegolino_veneziano damaru jlxu babyone InformationRetrieval meisner benwei pcamacho jweslley
	miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST. [My Copy] Nucleic acids research, Vol. 33, No. 13. (2005), pp. 4335-4344. by You Jung J. Kim, Andrew Boyd, Brian D. Athey, Jignesh M. Patel posted by 3 people guhjy blackbart cthachuk
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