nedwards's Publications

There are 22 publications listed

	Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes. [My Copy] Analytical chemistry, Vol. 81, No. 23. (2 November 2009), pp. 9633-9642. by Colin Wynne, Catherine Fenselau, Plamen A. Demirev, Nathan Edwards posted to top-down proteomics protein-identification prosight phylogenetic-analysis microorganism-identification by nedwards on 2009-11-05 22:20:30 as along with 2 people gjuggler brianb
	Insignia: a DNA signature search web server for diagnostic assay development. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp286. by A. M. Phillippy, K. Ayanbule, N. J. Edwards, S. L. Salzberg posted to microorganism-identification oligonucleotide-design by nedwards on 2009-05-06 15:47:00 as along with 1 person guhjy
	Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications [My Copy] J. Proteome Res., Vol. 7, No. 2. (12 January 2008), pp. 579-586. by Stephen Swatkoski, Peter Gutierrez, Colin Wynne, et al.Alexey Petrov, Jonathan D. Dinman, Nathan Edwards, Catherine Fenselau posted to acid-cleavage proteomics ribosomal-proteins by nedwards on 2008-09-28 15:34:42 as
	Proteomic strategies for rapid characterization of micro-organisms [My Copy] European Journal of Mass Spectrometry, Vol. 13, No. 1. (2007), pp. 35-39. by C. Fenselau, S. Russell, S. Swatkoski, N. Edwards posted to bacillus mass-spectrometry microorganism-identification proteomics by nedwards on 2008-05-05 16:04:15 as
	Combinatorial Problems Arising in SNP and Haplotype Analysis [My Copy] Discrete Mathematics and Theoretical Computer Science (2003), pp. 26-47. by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail posted to haplotypes phasing by nedwards on 2008-05-02 18:57:12 as
	Identification of beta-Lactamase in Antibiotic-Resistant Bacillus cereus Spores [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 3. (1 February 2008), pp. 904-906. by Catherine Fenselau, Crystal Havey, Nuttinee Teerakulkittipong, Stephen Swatkoski, Olli Laine, Nathan Edwards posted to antibiotic-resistance bacillus proteomics by nedwards on 2008-02-01 20:05:29 as
	HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models [My Copy] Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043. by Xue Wu, Chau-Wen Tseng, Nathan Edwards posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as along with 1 person guhjy
	Integration of 18O Labeling and Solution Isoelectric Focusing in a Shotgun Analysis of Mitochondrial Proteins [My Copy] J. Proteome Res., Vol. 6, No. 12. (7 December 2007), pp. 4601-4607. by Jinshan Wang, Peter Gutierrez, Nathan Edwards, Catherine Fenselau posted to isotope-label mass-spectrometry protein-quantitation proteomics by nedwards on 2007-12-16 19:55:55 as
	Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry [My Copy] Algorithms in Bioinformatics: Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002. Proceedings (2002), pp. 68-81. by Nathan Edwards, Ross Lippert posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-10 16:29:41 as
	A Survey of Computational Methods for Determining Haplotypes [My Copy] Computational Methods for SNPs and Haplotype Inference (2004), pp. 613-614. by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail posted to haplotypes by nedwards on 2007-12-10 16:18:30 as
	Whole-genome shotgun assembly and comparison of human genome assemblies [My Copy] Proceedings of the National Academy of Sciences, Vol. 101, No. 7. (17 February 2004), pp. 1916-1921. by Sorin Istrail, Granger G. Sutton, Liliana Florea, et al.Aaron L. Halpern, Clark M. Mobarry, Ross Lippert, Brian Walenz, Hagit Shatkay, Ian Dew, Jason R. Miller, Michael J. Flanigan, Nathan J. Edwards, Randall Bolanos, Daniel Fasulo, Bjarni V. Halldorsson, Sridhar Hannenhalli, Russell Turner, Shibu Yooseph, Fu Lu, Deborah R. Nusskern, Bixiong C. Shue, Xiangqun H. Zheng, Fei Zhong, Arthur L. Delcher, Daniel H. Huson, Saul A. Kravitz, Laurent Mouchard, Knut Reinert, Karin A. Remington, Andrew G. Clark, Michael S. Waterman, Evan E. Eichler, Mark D. Adams, Michael W. Hunkapiller, Eugene W. Myers, Craig J. Venter posted to genome-assembly by nedwards on 2007-12-10 15:45:42 as
	A unique Mycobacterium ESX-1 protein co-secretes with CFP-10/ESAT-6 and is necessary for inhibiting phagosome maturation [My Copy] Molecular Microbiology, Vol. 66, No. 3. (November 2007), pp. 787-800. by Junjie Xu, Olli Laine, Mark Masciocchi, et al.Joanna Manoranjan, Jennifer Smith, Shao J. Du, Nathan Edwards, Xiaoping Zhu, Catherine Fenselau, Lian-Yong Gao posted to proteomics by nedwards on 2007-10-04 18:31:46 as
	Integration of Residue-Specific Acid Cleavage into Proteomic Workflows [My Copy] J. Proteome Res. (29 September 2007) by S. Swatkoski, P. Gutierrez, J. Ginter, et al.A. Petrov, J. D. Dinman, N. Edwards, C. Fenselau posted to acid-cleavage proteomics by nedwards on 2007-10-04 15:37:07 as
	Alignment of Mass Spectrometry Data by Clique Finding and Optimization [My Copy] Systems Biology and Computational Proteomics (2007), pp. 119-129. by Daniel Fasulo, Anne-Katrin Emde, Lu-Yong Wang, Karin Noy, Nathan Edwards posted to label-free mass-spectrometry protein-quantitation proteomics by nedwards on 2007-10-04 15:30:13 as
	SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001) by V. Bafna, N. Edwards posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:18:18 as
	On de novo interpretation of tandem mass spectra for peptide identification [My Copy] In RECOMB '03: Proceedings of the seventh annual international conference on Research in computational molecular biology (2003), pp. 9-18. by Vineet Bafna, Nathan Edwards posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:16:37 as
	Sequence Database Compression for Peptide Identification from Tandem Mass Spectra [My Copy] In Algorithms in Bioinformatics, Vol. 3240 (2004), pp. 230-241. by Nathan Edwards, Ross Lippert posted to peptide-identification proteomics sequence-database sequencing-by-hybridization-graph tandem-mass-spectrometry by nedwards on 2007-08-07 16:55:54 as
	Proteomic Strategies for Rapid Analysis of Microorganisms [My Copy] European Journal of Mass Spectrometry, Vol. 13, No. 1. (2007), pp. 35-39. by C. Fenselau, S. Russell, S. Swatkoski, N. Edwards posted to mass-spectrometry microorganism-identification proteomics species-signatures by nedwards on 2007-08-07 16:38:36 as
	Detection of Plasmid Insertion in Escherichia coli by MALDI-TOF Mass Spectrometry [My Copy] Anal. Chem., Vol. 79, No. 14. (15 July 2007), pp. 5399-5406. by S. C. Russell, N. Edwards, C. Fenselau posted to genetic-engineering microorganism-identification proteomics by nedwards on 2007-08-07 15:00:47 as
	Rapid Chemical Digestion of Small Acid-Soluble Spore Proteins for Analysis of Bacillus Spores [My Copy] Anal. Chem., Vol. 78, No. 1. (1 January 2006), pp. 181-188. by S. Swatkoski, S. C. Russell, N. Edwards, C. Fenselau posted to acid-cleavage microorganism-identification proteomics by nedwards on 2007-08-07 14:59:51 as
	Analysis of a Model Virus Using Residue-Specific Chemical Cleavage and MALDI-TOF Mass Spectrometry [My Copy] Anal. Chem., Vol. 79, No. 2. (15 January 2007), pp. 654-658. by S. Swatkoski, S. Russell, N. Edwards, C. Fenselau posted to acid-cleavage proteomics by nedwards on 2007-08-07 14:58:46 as
	Novel peptide identification from tandem mass spectra using ESTs and sequence database compression [My Copy] Molecular Systems Biology In Mol Syst Biol, Vol. 3 (17 April 2007) by Nathan J. Edwards posted to genome-annotation peptide-identification proteomics sequence-database sequencing-by-hybridization-graph tandem-mass-spectrometry by nedwards on 2007-08-07 14:46:00 as along with 1 person zwang