okarsligil's Top Recommendations

These recommendations were last updated about 2 hours ago.

	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 82 people Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted by 32 people sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller C. elegans / WormBase tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience vertikalist BTS-PT-AS-CS
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted by 28 people schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang carlk RobMills streptomyces dbk-lab kdl Bioinformatics Diego_Prada marcio
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted by 83 people antonkratz jaspervoskuilen complex networks Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon GEB dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin GeneGo carlk applesnow subhacom i-stevenson ethkim
	An automated method for finding molecular complexes in large protein interaction networks. [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003) by G. D. Bader, C. W. Hogue posted by 13 people zufar Bioinformatics dswan waqaralikeble cswinburne jiny dragonrez lfriedl nirfriedman massivemayhem kdl carlk ethkim
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted by 32 people aceol nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper Evangelia shikin Pao-Yang GeneGo carlk cerca ethkim
	Interrogating protein interaction networks through structural biology. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by P. Aloy, R. B. Russell posted by 17 people kgutwin tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale structural_bioinformatics kdl Bioinformatics Evangelia
	Functional organization of the yeast proteome by systematic analysis of protein complexes [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147. by Anne-Claude Gavin, Markus Bosche, Roland Krause, et al.Paola Grandi, Martina Marzioch, Andreas Bauer, Jorg Schultz, Jens M. Rick, Anne-Marie Michon, Cristina-Maria Cruciat, Marita Remor, Christian Hofert, Malgorzata Schelder, Miro Brajenovic, Heinz Ruffner, Alejandro Merino, Karin Klein, Manuela Hudak, David Dickson, Tatjana Rudi, Volker Gnau, Angela Bauch, Sonja Bastuck, Bettina Huhse, Christina Leutwein, Marie-Anne Heurtier, Richard R. Copley, Angela Edelmann, Erich Querfurth, Vladimir Rybin, Gerard Drewes, Manfred Raida, Tewis Bouwmeester, Peer Bork, Bertrand Seraphin, Bernhard Kuster, Gitte Neubauer, Giulio Superti-Furga posted by 27 people aceol carlk chica lawraga semin cerca taenneken adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq kdl steinmetzlab iris_2001 csanford frohike ethkim
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted by 36 people aceol mpotamias Paccanaro Lab paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq kdl EBI-regulation BioinfoCIPF SGU-CIPF Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong D. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted by 32 people colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer kdl Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin GeneGo ksiek carlk
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted by 45 people mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT dandaman vietanh0 ep161302 nuin Stew
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted by 22 people carlk snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz kdl EBI-regulation shikin s041629 GeneGo pmendes mtruksa chasmand
	Data clustering: a review [My Copy] ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323. by A. K. Jain, M. N. Murty, P. J. Flynn posted by 78 people emailhy erikv thegoose elan urvoy stharward thefillm operon avoregnitiv fer votis pick600 pbk nhoussos qwermish svozil takeha-e eabait mthomure mercutio egh ericyu karbak dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul marcius stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ paulovn AbnerCYH tnhh flaviovdf dragonrez iraklis
	Systems Biology: A Brief Overview [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664. by Hiroaki Kitano posted by 45 people pjmaybank kokphinchooi schmidtm abhishek_tiwari fgibson roys daforerog Scis0000002 agomez smac tlse65 fierykylin Adso dansullivanblk rsantana joseph_x_zhou reyez softsimu irenas Yanno Borelli wnpx biosv shivakumar3_14 dgront kehan cconboy mmt margaritis grahamc roland_ewald carmaus dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock jdiezperezj maburkitt mertnuhoglu edvin lenov soramame_0518 nsamways
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted by 38 people viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling cisevol BergmanLab njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted by 35 people stharward antonkratz ipark-kaist svozil bertelsen Bioinformatics - CRUK Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura structural_bioinformatics Bioinformatics heliopais shikin minostro giovenko jo_davies aviad_work
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted by 50 people gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet Bioinformatics BioinfoCIPF GeschwindLab Indigene heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted by 25 people cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel kdl EBI-regulation Evangelia shung phoenixzxl penpen926 carlk frohike
	A protein interaction network of the malaria parasite Plasmodium falciparum. [My Copy] Nature, Vol. 438, No. 7064. (3 November 2005), pp. 103-107. by Douglas J. LaCount, Marissa Vignali, Rakesh Chettier, et al.Amit Phansalkar, Russell Bell, Jay R. Hesselberth, Lori W. Schoenfeld, Irene Ota, Sudhir Sahasrabudhe, Cornelia Kurschner, Stanley Fields, Robert E. Hughes posted by 16 people arider1 chica shung gildario marcio ana tmmurali dyermd Sharpshoot becarmson grahamc GeeSharpMinor lpfernandes structural_bioinformatics Bioinformatics csanford
	Evolutionary information for specifying a protein fold [My Copy] Nature, Vol. 437, No. 7058., pp. 512-518. by Michael Socolich, Steve W. Lockless, William P. Russ, Heather Lee, Kevin H. Gardner, Rama Ranganathan posted by 21 people ucbcjbm ana barry lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF mingzhi bethbromley ca3295
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted by 15 people winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF Evangelia kintoki
	Genome evolution reveals biochemical networks and functional modules. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15428-15433. by C. von Mering, E. M. Zdobnov, S. Tsoka, et al.F. D. Ciccarelli, J. B. Pereira-Leal, C. A. Ouzounis, P. Bork posted by 4 people ujh lfriedl kdl Bioinformatics
	Structural variation in the human genome [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 85-97. by Lars Feuk, Andrew R. Carson, Stephen W. Scherer posted by 37 people ajbattle bertelsen baizhang APRegier Neeperando xingxu daforerog psique Zephyrus GEB dlobo jandot cgreal balajis bala balicea dchughes tabu darcyduke adepace AaronDarling rdiaz massivemayhem cat_worth jmrivort ccr Lip CGREL structural_bioinformatics Bioinformatics EisenLab SFX-Verde-team-MITLibraries G4ID G-quadruplex Supramolecular DictyosteliumGroup Genetics-of-Gambling
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted by 25 people ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF nigham sim82
	MicroRNA expression profiles classify human cancers [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 834-838. by Jun Lu, Gad Getz, Eric A. Miska, et al.Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L. Ebert, Raymond H. Mak, Adolfo A. Ferrando, James R. Downing, Tyler Jacks, H. Robert Horvitz, Todd R. Golub posted by 18 people songpku tibbitts abhattac cswinburne jfr tmmurali ajeffs tuck mtagaya ealloza frohike Bioinformatics capitall maralena giovenko srp33 microRNA zhouyu
	Natural-like function in artificial WW domains [My Copy] Nature, Vol. 437, No. 7058., pp. 579-583. by William P. Russ, Drew M. Lowery, Prashant Mishra, Michael B. Yaffe, Rama Ranganathan posted by 12 people ana barry balajis marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF bethbromley ca3295
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted by 49 people robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest Network Analysis of Genes Regulated in Renal Diseases daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab shoshin ic4 generif_paper shikin nolodie GomezLab mingzhi carlk yaredo
	Hierarchical Organization of Modularity in Metabolic Networks [My Copy] Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabasi posted by 33 people ganden feshbach cn_honjyo haewoon Scis0000002 schwartzjmc zufar deanmalmgren diamantis shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab Evangelia stefanoallesina ellakat iris_2001
	Statistical significance for genomewide studies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445. by John D. Storey, Robert Tibshirani posted by 37 people jperkins arider1 ilyashl icecrown bertelsen jbhiatt aviad_work biomcgary daforerog treangen druvus vertikalist maximilianh BTS-PT-AS-CS diging_data egreenfest guhjy textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso Bioinformatics shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics (11 August 2005) by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted by 16 people natstreet druvus BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan za structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF bertelsen
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted by 12 people ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF kgutwin
	SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks [My Copy] Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451. by Stefan Bornholdt posted by 9 people jmenche snuppepuppan eldan jmeppley balajis wnpx biosv fishtank Bioinformatics
	Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network [My Copy] Genome Research, Vol. 13, No. 2. (1 February 2003), pp. 244-253. by Jochen FÃ¶rster, Iman Famili, Patrick Fu, Bernhard Palsson, Jens Nielsen posted by 15 people sergiun schwartzjmc michaelbarton csanford opheliav wnpx nirfriedman JeremyZucker bsmagic gcalda jpoyatos edwardmorrissey Bioinformatics bioinplant MetabolicModeling
	A comprehensive analysis of protein\|[ndash]\|protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted by 22 people aceol mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry kdl hplatero csanford carlk
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted by 20 people martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Reverse Engineering of Biological Complexity [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669. by Marie E. Csete, John C. Doyle posted by 31 people tomhebbron yyfwuhan abhishek_tiwari jdscheff jporternj Scis0000002 reyez camster snuppepuppan barry monod lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan kevinemamy anatiferous timflutre dbilar jrbanga dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab edvin bayesian
	Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs [My Copy] Nature, Vol. 433, No. 7027. (30 January 2005), pp. 769-773. by Lee P. Lim, Nelson C. Lau, Philip Garrett-Engele, et al.Andrew Grimson, Janell M. Schelter, John Castle, David P. Bartel, Peter S. Linsley, Jason M. Johnson posted by 23 people daforerog giovenko guhjy jtextori sanjeevpillai jfr balicea tabu mtagaya neveaire cgessmu ealloza skoch koller lp2 Biostatistics Computational-Genomics Bioinformatics Neuroscience microRNA heliopais maralena caseybrown
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted by 24 people chica akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel T_lab mingzhi vietanh0 cdeane carlk
	ROCR: visualizing classifier performance in R [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3940-3941. by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted by 7 people megraw ana balajis structural_bioinformatics Bioinformatics chad_davis baldigroup
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted by 16 people dfdong timg mgomes barry bjorns wiehe julianm bicko chad_davis cjeans structural_bioinformatics ZLAB Bioinformatics Evangelia marti higueruelo
	The Transcriptional Landscape of the Mammalian Genome [My Copy] Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563. by The FANTOM Consortium, P. Carninci, T. Kasukawa, et al.S. Katayama, J. Gough, M. C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V. B. Bajic, S. E. Brenner, S. Batalov, A. R. R. Forrest, M. Zavolan, M. J. Davis, L. G. Wilming, V. Aidinis, J. E. Allen, A. Ambesi-Impiombato, R. Apweiler, R. N. Aturaliya, T. L. Bailey, M. Bansal, L. Baxter, K. W. Beisel, T. Bersano, H. Bono, A. M. Chalk, K. P. Chiu, V. Choudhary, A. Christoffels, D. R. Clutterbuck, M. L. Crowe, E. Dalla, B. P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C. F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, P. Georgii-Hemming, T. R. Gingeras, T. Gojobori, R. E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T. K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S. P. T. Krishnan, A. Kruger, S. K. Kummerfeld, I. V. Kurochkin, L. F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. McWilliam, Madan M. Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, S. Mottagui-Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K. C. Pang, W. J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J. F. Reid, B. Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S. L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C. A. M. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S. L. Tan, S. Tang, M. S. Taylor, J. Tegner, S. A. Teichmann, H. R. Ueda, E. van Nimwegen, R. Verardo, C. L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S. M. Grimmond, R. D. Teasdale, E. T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J. S. Mattick, D. A. Hume, RIKEN Genome Exploration Research Group and Genome Science Group Genome Network Project Core Group, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, M. Kanamori-Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Y. Okamura-Oho, H. Suzuki, J. Kawai, Y. Hayashizaki posted by 21 people hagechouchin443 daforerog guhjy myrtilus setar miguel Cortel jwortman jfr tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mtagaya olympos raylim Bioinformatics gjuggler
	Functional annotation and network reconstruction through cross-platform integration of microarray data [My Copy] Nat Biotech, Vol. 23, No. 2. (16 February 2005), pp. 238-243. by Xianghong J. Zhou, Ming-Chih J. Kao, Haiyan Huang, et al.Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M. Aparicio, Caleb E. Finch, Todd E. Morgan, Wing H. Wong posted by 11 people Borelli cswinburne setar andytseng imouthesmp lyongu wnpx rdiaz bsmagic Bioinformatics bioinplant
	Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling [My Copy] Science, Vol. 301, No. 5629. (4 July 2003), pp. 102-105. by Timothy S. Gardner, Diego di Bernardo, David Lorenz, James J. Collins posted by 24 people Borelli edwardmorrissey myzhang mmcclean BTS-PT-AS-CS vertikalist rklancer kentsis dragonrez rhem1224 rubendrr adepace neveaire jayster4 Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells heliopais roys
	Linked: How Everything Is Connected to Everything Else and What It Means [My Copy] (29 April 2003) by Albert-Laszlo Barabasi posted by 134 people kinop borkurdotnet scottmoody davidleitner simdoc makrehchi fierykylin tomhebbron boosda Information Integration Architecture mxro thegoose rickl MariaChiaraP pdlug nazimkeven eddymier mboehmer ajaymalik pacianca3 donade einatb gastarblogger fbr maike emre panisson Adso gkoenig mattjb mooniii pick600 germoglio hrwiltse laurobeltrao nigini camster draggin korakot Mandre A_Olympia zephoria RyanSchultz fmatthes scholz barry cyprien riadlem lehel zinp nkorf tautai wcrosbie cchesher cmmorel jekky Typewriter mbliemel Jenneke cgjj slariccia irinas petzlux marije seawidget hannont matteodellamico leonardo bibliothecaire bigbossman krisl spirit_of_numenor cristinaalp brusilovsky jwdietrich britton cerkut awooga mzygmunt azygmunt RafG jaspervoskuilen kevinemamy timflutre alexevasion flavian_vasile mattlandau PaulBHartzog roland_ewald jenna anansi sidds1601 rkalvi JimFolk CMU-HCII Philosophy_of_Information dbk-lab Blog_and_Wiki_Research automatic_summarization structural_bioinformatics CSCW MathBio ASR digital_youth Sociology Librarians Semantic-Social-Networks Wikipedia CoP_CMS Bioinformatics folksonomy ETEC533 CMS Cybernetics social_navigation ComplexAdaptiveSystems Biomedical_Cybernetics AGH-IISG Adaptive-Web dIEMoSIRIS MoSi-Rostock AQUA-FONTIS-Study MASSS CSU_School_of_Education Web2-0_Education asrilova Social Web anton-tayanovskyy ICT4D aelzaim copyculture kamccollum kikimu thecolourblue
	Fragnostic: walking through protein structure space. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by I. Friedberg, A. Godzik posted by 12 people ana barry pansapiens aalibes Einat marcius alexg eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Complexity vs stability in small-world networks [My Copy] (24 July 2004) by Sitabhra Sinha posted by 22 people nettraq korakot sccook annagold tglaisyer rasca barry jrw zqshen rvasa lyongu cwoodward scottmoody balicea fuzzy7761 Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics GraphVis Bioinformatics semantic-multicast-routing DickSilver
	Identifying regulatory networks by combinatorial analysis of promoter elements [My Copy] Nature Genetics, Vol. 29, No. 2. (10 September 2001), pp. 153-159. by Yitzhak Pilpel, Priya Sudarsanam, George M. Church posted by 10 people ipark-kaist farhat imouthesmp troels_marstrand xwbcn wnpx noano koller Bioinformatics windman83
	Toward High-Resolution de Novo Structure Prediction for Small Proteins [My Copy] Science, Vol. 309, No. 5742. (16 September 2005), pp. 1868-1871. by Philip Bradley, Kira M. S. Misura, David Baker posted by 16 people ucbcjbm paddydu kgutwin BragilMassoud ana barry thaliana jwm vavi marcius gbart thamelry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted by 21 people GeeSharpMinor coela biozhang2001 lyongu marcius alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant SGU-CIPF
	Global Mapping of the Yeast Genetic Interaction Network [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 808-813. by Amy H. Tong, Guillaume Lesage, Gary D. Bader, et al.Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F. Berriz, Renee L. Brost, Michael Chang, YiQun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S. Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N. Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B. Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L. Wong, Lan V. Zhang, Hongwei Zhu, Christopher G. Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P. Roth, Grant W. Brown, Brenda Andrews, Howard Bussey, Charles Boone posted by 33 people kentz colmryan meanerelk rdowell TheresaNiederberger dakelley kinop nzm roys ajbattle czeller ldfu pcahan1 lfriedl lyongu luispedro opheliav tabu Chue nirfriedman nickluscombe koller raiyar patrycjam patrycja_missiuro kdl EBI-regulation jiny chasmand tresch Takayuki ksiek carlk
	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted by 32 people jperkins VGreiff lwaldron shikin jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies MathBio Bioinformatics Computational_Systems_Biology Systems_Biology waszak bakakaj vertikalist
	Gaining confidence in high-throughput protein interaction networks. [My Copy] Nature biotechnology, Vol. 22, No. 1. (January 2004), pp. 78-85. by Joel S. Bader, Amitabha Chaudhuri, Jonathan M. Rothberg, John Chant posted by 19 people aceol carlk chica anf dakelley lawraga wenhui ocs dragonrez lfriedl gurkanbebek raiyar cjeans iris_2001 patrycjam patrycja_missiuro kdl Evangelia ellakat
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted by 10 people ana marcius tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Statistical analysis and prediction of protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366. by Andrew J. Bordner, Ruben Abagyan posted by 10 people boris_aguilar barry bicko lyongu ameetsoni cjeans structural_bioinformatics Bioinformatics Evangelia marti
	Probabilistic model of the human protein-protein interaction network [My Copy] Nature Biotechnology, Vol. 23, No. 8., pp. 951-959. by Daniel R. Rhodes, Scott A. Tomlins, Sooryanarayana Varambally, et al.Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M. Chinnaiyan posted by 21 people snow_dragon Borelli tonamswish ilyashl aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz kdl EBI-regulation mingzhi maralena phoenixzxl penpen926
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	Protein families and TRIBES in genome sequence space. [My Copy] Nucleic Acids Res, Vol. 31, No. 15. (1 August 2003), pp. 4632-4638. by A. J. Enright, V. Kunin, C. A. Ouzounis posted by 4 people ana tmmurali structural_bioinformatics Bioinformatics
	Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. [My Copy] J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795. by X. Li, O. Keskin, B. Ma, R. Nussinov, J. Liang posted by 13 people barry baaden bicko nickolay j3xucite bluvsh1 xz grahamc structural_bioinformatics Bioinformatics Evangelia ladab paolomarcatili
	Simulating protein evolution in sequence and structure space. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207. by Y. Xia, M. Levitt posted by 18 people idoerg yuslinaz saunders betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart analogAI insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7203-7208. by Amos Tanay, Aviv Regev, Ron Shamir posted by 5 people vingron roys Schmidtc Bioinformatics carlk
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted by 10 people aqeel ana barry lna marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Protein molecular function prediction by Bayesian phylogenomics. [My Copy] PLoS computational biology, Vol. 1, No. 5. (7 October 2005) by B. E. Engelhardt, M. I. Jordan, K. E. Muratore, S. E. Brenner posted by 14 people sgoetz engelhardt kentsis ana eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted by 36 people antonkratz dagmar biomcgary poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock carlk awooga tvdbulck vsausg dragonrez
	iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 3. (1 February 2005), pp. 410-412. by Robert D. Finn, Mhairi Marshall, Alex Bateman posted by 11 people kiekyon kshameer mdimmic barry chad_davis choonpeng massivemayhem antonkratz structural_bioinformatics Bioinformatics kintoki
	Local complexity of amino acid interactions in a protein core. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116. by R. K. Jain, R. Ranganathan posted by 10 people ana barry lna marcius gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted by 8 people ana barry Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Evolutionary dynamics on graphs [My Copy] Nature, Vol. 433, No. 7023. (20 January 2005), pp. 312-316. by Erez Lieberman, Christoph Hauert, Martin A. Nowak posted by 24 people Soslab halukbingol anarinsk vtraag qwermish mague bpb Borelli shivakumar3_14 cmm pbellec kehan zono jaspervoskuilen timflutre marcusfrean biodiversity_conservation Bioinformatics FAB-lab GrassBase tomrevilla saket balicea davidchavalarias
	Computational identification of noncoding RNAs in E. coli by comparative genomics. [My Copy] Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373. by E. Rivas, R. J. Klein, T. A. Jones, S. R. Eddy posted by 12 people NicholasErho myrtilus evaf marcius eckart_bindewald arcticrasta dquest bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Six Degrees: The New Science of Networks [My Copy] (06 May 2004) by Duncan J. Watts posted by 11 people camster qaramazov korakot barry AdrianMiles dullhunk Philosophy_of_Information dbk-lab Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	Classification of a large microarray data set: algorithm comparison and analysis of drug signatures. [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 724-736. by G. Natsoulis, L. El Ghaoui, G. R. Lanckriet, et al.A. M. Tolley, F. Leroy, S. Dunlea, B. P. Eynon, C. I. Pearson, S. Tugendreich, K. Jarnagin posted by 5 people mingzhi tmmurali jdiggans frohike Bioinformatics
	DrugBank: a comprehensive resource for in silico drug discovery and exploration [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D668-672. by David S. Wishart, Craig Knox, An C. Guo, et al.Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey posted by 14 people sm-rush bertelsen wenhui yaredo dansullivanblk kuhn maryee sangeetha madhadron jdiggans massivemayhem Bioinformatics insilicodrug elvinado
	'Conserved hypothetical' proteins: prioritization of targets for experimental study. [My Copy] Nucleic Acids Res, Vol. 32, No. 18. (2004), pp. 5452-5463. by M. Y. Galperin, E. V. Koonin posted by 6 people ana dayjm balajis structural_bioinformatics Bioinformatics bakakaj
	Algorithms for estimating relative importance in networks [My Copy] In KDD '03: Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining (2003), pp. 266-275. by Scott White, Padhraic Smyth posted by 19 people gregdavisfromnj ttylenda kohei-o korakot elsantosneto barry aalibes ldietz anon_pl azygmunt jmarcelino hannu Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics AGH-IISG ThinkTank tnhh
	Identifying the conserved network of cis-regulatory sites of a eukaryotic genome [My Copy] PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17400-17405. by Ting Wang, Gary D. Stormo posted by 8 people aprasad tmmurali indigoviolet kaspermunch emilyhare Bioinformatics EisenLab sconlan
	1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap. [My Copy] J Comput Biol, Vol. 11, No. 1. (2004), pp. 27-52. by A. Caprara, R. Carr, S. Istrail, G. Lancia, B. Walenz posted by 5 people ana vavi structural_bioinformatics Bioinformatics carlk
	Structure-based systems biology: a zoom lens for the cell. [My Copy] FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858. by P. Aloy, R. B. Russell posted by 7 people karbak barry lyongu biosv structural_bioinformatics Bioinformatics chad_davis
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted by 10 people tomjad sebk ana dimka marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF tjimenez
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by B. Ma, T. Elkayam, H. Wolfson, R. Nussinov posted by 13 people tbinbal dkoveal mdimmic barry bicko lyongu nickolay choonpeng cjeans carlescorbi structural_bioinformatics Bioinformatics ladab
	Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space. [My Copy] Proteins, Vol. 50, No. 1. (1 January 2003), pp. 35-43. by S. Miyazawa, R. L. Jernigan posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Uncovering evolutionary patterns of gene expression using microarrays [My Copy] Trends in Ecology & Evolution, Vol. 21, No. 1. (January 2006), pp. 29-37. by Jose M. Ranz, Carlos A. Machado posted by 14 people jmeppley marcius balicea tabu cmm sameetmehta natstreet Bioinformatics ProkaryoteInterestGroup FAB-lab BioinfoCIPF SGU-CIPF sunye klo
	Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. [My Copy] J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188. by R. Kolodny, P. Koehl, M. Levitt posted by 8 people karbak ana lulab balajis analogAI structural_bioinformatics Bioinformatics reyez
	The C-type lectin fold as an evolutionary solution for massive sequence variation [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892. by Stephen A. Mcmahon, Jason L. Miller, Jeffrey A. Lawton, et al.Donald E. Kerkow, Asher Hodes, Marc A. Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F. Miller, Partho Ghosh posted by 7 people stevanspringer ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted by 8 people medic0747 chad_davis ronkeliz ana tjimenez cjeans structural_bioinformatics Bioinformatics
	Convergent evolution as a mechanism for pathogenic adaptation. [My Copy] Trends Microbiol (7 September 2005) by Sergey Sikora, Alex Strongin, Adam Godzik posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	A Protein Interaction Map of Drosophila melanogaster [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736. by L. Giot, J. S. Bader, C. Brouwer, et al.A. Chaudhuri, B. Kuang, Y. Li, Y. L. Hao, C. E. Ooi, B. Godwin, E. Vitols, G. Vijayadamodar, P. Pochart, H. Machineni, M. Welsh, Y. Kong, B. Zerhusen, R. Malcolm, Z. Varrone, A. Collis, M. Minto, S. Burgess, L. McDaniel, E. Stimpson, F. Spriggs, J. Williams, K. Neurath, N. Ioime, M. Agee, E. Voss, K. Furtak, R. Renzulli, N. Aanensen, S. Carrolla, E. Bickelhaupt, Y. Lazovatsky, A. DaSilva, J. Zhong, C. A. Stanyon, R. L. Finley, K. P. White, M. Braverman, T. Jarvie, S. Gold, M. Leach, J. Knight, R. A. Shimkets, M. P. McKenna, J. Chant, J. M. Rothberg posted by 20 people nitxin mgomes semin diamantis dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn kdl WetBiology csanford antonkratz carlk cerca
	The ENCODE (ENCyclopedia Of DNA Elements) Project. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 636-640. by posted by 15 people timhubbard polivares ilyashl raistrick setar balajis skhadar qfwills djkt frohike JeffR100 olympos Bioinformatics hpaces siebert
	Small World: Uncovering Nature's Hidden Networks [My Copy] (13 June 2002) by Mark Buchanan posted by 9 people camster korakot barry Philosophy_of_Information dbk-lab Blog_and_Wiki_Research structural_bioinformatics Bioinformatics kaks
	Evolution of protein structures and functions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 400-408. by L. N. Kinch, N. V. Grishin posted by 13 people korakot karbak matzke ana barry joergkurtwegner Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Protein-protein interactions: a review of protein dimer structures. [My Copy] Prog Biophys Mol Biol, Vol. 63, No. 1. (1995), pp. 31-65. by S. Jones, J. M. Thornton posted by 10 people viktor21614 bicko barry chad_davis joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Excluded volume in protein side-chain packing [My Copy] Journal of Molecular Biology, Vol. 311, No. 1. (03 August 2001), pp. 183-193. by E. Kussell posted by 5 people sebk ana structural_bioinformatics Bioinformatics carlk
	A comparison of RNA folding measures [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (3 October 2005), 241. by Eva Freyhult, Paul Gardner, Vincent Moulton posted by 12 people homonecloco druvus imouthesmp marcius eckart_bindewald mtagaya bsmagic Kiarostami Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Conservation of Orientation and Sequence in Protein Domain-Domain Interactions [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 1265-1279. by Stephen J. Littler, Simon J. Hubbard posted by 8 people ana bicko Schmidtc cjeans winterschlaefer structural_bioinformatics Bioinformatics wilbur
	Uncovering the overlapping community structure of complex networks in nature and society [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 814-818. by Gergely Palla, Imre Derenyi, Illes Farkas, Tamas Vicsek posted by 22 people carlk hendysh rst colmryan saket haewoon theshadowhost kuhn jfr lfriedl wilmegape gcalda ltabourier michaelmampaey Scis0000002 kdl ADMiRes maralena lmichan ellakat tmmurali betaparticle
	Inferring Cellular Networks Using Probabilistic Graphical Models [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805. by Nir Friedman posted by 27 people antonkratz jxl phoenixzxl abhishek_tiwari richardbickerton ruichu Jarman Lab ggallone bertelsen ldfu ujh lfriedl opheliav ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey kdl vietanh0 Yumyai srp33 saman_vp jo_davies
	A minimal gene set for cellular life derived by comparison of complete bacterial genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 93, No. 19. (17 September 1996), pp. 10268-10273. by A. R. Mushegian, E. V. Koonin posted by 12 people tomhebbron antonkratz balicea treangen operon ana bjorns jwm gbart structural_bioinformatics Bioinformatics westoll
	BioRAT: extracting biological information from full-length papers [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3206-3213. by David P. A. Corney, Bernard F. Buxton, William B. Langdon, David T. Jones posted by 21 people robert85 Bioinformatics svozil BergmanLab cisevol arafalov camster snuppepuppan irenas Enro guhjy A_Olympia helliontroy massivemayhem Philosophy_of_Information dbk-lab Blog_and_Wiki_Research biomedical-nlp sobolevnrm baker-group satre
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted by 13 people ucbcjbm flbarroso yuslinaz sgoetz ana kuhn tny sriram_s cdallett uz_labu_laimi structural_bioinformatics Bioinformatics sim82
	Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility. [My Copy] J Mol Biol, Vol. 244, No. 3. (2 December 1994), pp. 332-350. by R. B. Russell, G. J. Barton posted by 5 people ana barry chad_davis structural_bioinformatics Bioinformatics