operon's profile

Recent Activity

• 03:06: posted Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

• 07:01: posted Predicting protein function from sequence and structure
• 07:00: posted Discriminative motifs.

• 22:32: posted The ontology of biological sequences
• 22:24: posted COMIT: Identification of noncoding motifs under selection in coding sequences
• 20:49: posted Genome analysis with inter-nucleotide distances
• 20:48: posted Pokey, a new DNA transposon in Daphnia (cladocera: crustacea).
• 20:48: posted Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences.
• 20:48: posted Evolution of the transposable element Pokey in the ribosomal DNA of species in the subgenus Daphnia (Crustacea: Cladocera).
• 20:48: posted The association between breeding system and transposable element dynamics in Daphnia pulex.
• 20:47: posted On Becoming a Scientist
• 20:46: posted Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses.
• 20:46: posted Alternative Methods for Concatenation of Core Genes Indicate a Lack of Resolution in Deep Nodes of the Prokaryotic Phylogeny
• 16:04: posted Is evolution Darwinian or/and Lamarckian?
• 03:09: posted The secondary contact phase of allopatric speciation in Darwin's finches
• 03:08: posted Algorithms for effective querying of compound graph-based pathway databases
• 03:08: posted The B73 Maize Genome: Complexity, Diversity, and Dynamics

• 21:38: posted Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
• 20:56: posted Ants, Cataglyphis cursor, Use Precisely Directed Rescue Behavior to Free Entrapped Relatives
• 00:08: posted Horizontal gene transfer in evolution: facts and challenges
• 00:07: posted The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees

• 01:39: posted Molecular clocks: when timesare a-changin'
• 00:43: posted GenomeGraphs: integrated genomic data visualization with R.
• 00:42: posted RGG: a general GUI Framework for R scripts.
• 00:41: posted Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web
• 00:27: posted A phylogenomic approach to resolve the basal pterygote divergence.
• 00:26: posted Maintenance of transposon-free regions throughout vertebrate evolution
• 00:25: posted Extreme resistance of bdelloid rotifers to ionizing radiation
• 00:25: posted Retrotransposons within Syntenic Regions between Soybean and Medicago truncatula and Their Contribution to Local Genome Evolution
• 00:25: posted The Fate of Transposable Elements in Asexual Populations
• 00:25: posted Evolution and Horizontal Transfer of a DD37E DNA Transposon in Mosquitoes
• 00:25: posted Diverse DNA transposons in rotifers of the class Bdelloidea
• 00:23: posted Identification of Active Transposon dTok, a Member of the hAT Family, in Rice

• 23:57: posted Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea
• 23:49: posted Evolution of Teleost Fish Retroviruses: Characterization of New Retroviruses with Cellular Genes
• 23:47: posted An Ac-like Transposable Element Family With Transcriptionally Active Y-Linked Copies in the White Campion, Silene latifolia
• 23:47: posted Vege and Mar: Two Novel hAT MITE Families from Drosophila willistoni
• 23:44: posted Acquisition of Endonuclease Specificity during Evolution of L1 Retrotransposon
• 23:44: posted mRNA Retrotransposition Coupled with 5' Inversion as a Possible Source of New Genes
• 23:41: posted Transcendent Elements: Whole-Genome Transposon Screens and Open Evolutionary Questions
• 23:40: posted An alternative approach to medical genetics based on modern evolutionary biology. Part 2: retroviral symbiosis
• 23:39: posted Retroposed SNOfall—A mammalian-wide comparison of platypus snoRNAs
• 23:39: posted Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
• 23:38: posted Subtraction by addition: domesticated transposases in programmed DNA elimination
• 23:37: posted Automated recognition of retroviral sequences in genomic data RetroTector(C)
• 23:37: posted A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation
• 23:34: posted Protein coding potential of retroviruses and other transposable elements in vertebrate genomes
• 23:33: posted A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity
• 23:33: posted Mobility Pathways for Vertebrate L1, L2, CR1, and RTE Clade Retrotransposons
• 23:33: posted The opossum genome: Insights and opportunities from an alternative mammal
• 23:33: posted Possible involvement of SINEs in mammalian-specific brain formation
• 23:31: posted The necessary junk: new functions for transposable elements
• 23:22: posted 5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome
• 23:22: posted Mobile elements create structural variation: Analysis of a complete human genome
• 23:21: posted Exon-trapping mediated by the human retrotransposon SVA
• 23:21: posted Cross-Sectional Dating of Novel Haplotypes of HERV-K 113 and HERV-K 115 Indicate These Proviruses Originated in Africa before Homo sapiens
• 23:18: posted Unusual composition of a yeast chromosome arm is associated with its delayed replication
• 23:16: posted Adplot: detection and visualization of repetitive patterns in complete genomes
• 23:12: posted Structural and Evolutionary Analyses of the Ty3/gypsy Group of LTR Retrotransposons in the Genome of Anopheles gambiae
• 23:12: posted Computational Finishing of Large Sequence Contigs Reveals Interspersed Nested Repeats and Gene Islands in the rf1-Associated Region of Maize
• 23:11: posted Using GeneWise in the Drosophila Annotation Experiment
• 23:11: posted Genome annotation past, present, and future: How to define an ORF at each locus
• 23:11: posted CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
• 23:11: posted Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron exon structure
• 23:11: posted EGPred: Prediction of Eukaryotic Genes Using Ab Initio Methods After Combining With Sequence Similarity Approaches
• 20:23: posted Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation
• 18:51: posted Reading between the LINEs to see into the past
• 18:51: posted Characterizing natural variation using next-generation sequencing technologies
• 18:50: posted The impact of next-generation sequencing technology on genetics
• 18:50: posted A SINE species from hippopotamus and its distribution among animal species
• 18:49: posted Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
• 18:48: posted Writing DNA with GenoCAD.
• 18:47: posted Common evolutionary trends for SINE RNA structures
• 18:46: posted What controls nucleosome positions?
• 18:45: posted Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
• 18:44: posted High mitogenomic evolutionary rates and time dependency.
• 18:44: posted Increased rate of human mutations where DNA and RNA polymerases collide.

• 08:14: posted XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services
• 02:24: posted A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML

• 03:53: posted Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life