Marcos Oliveira de Carvalho's Top Recommendations

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	Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation [My Copy] Nature Reviews Genetics, Vol. 10, No. 3. (01 March 2009), pp. 195-205. by Brian Charlesworth posted by 11 people codonusage xingxu gwallau aprasad jmeppley druvus R.E.A.D Zephyrus misonneh pkonings provero
	Lossless filter for multiple repeats with bounded edit distance [My Copy] Algorithms for Molecular Biology, Vol. 4, No. 1. (30 January 2009), 3. by Pierre Peterlongo, Gustavo Sacomoto, Alair D. Lago, Nadia Pisanti, Marie F. Sagot posted by 5 people renatocarmo gwallau timflutre svenrahmann druvus
	Small silencing RNAs: an expanding universe [My Copy] Nat Rev Genet, Vol. 10, No. 2. (01 February 2009), pp. 94-108. by Megha Ghildiyal, Phillip D. Zamore posted by 21 people NicolSiegel hzoltan tonamswish Small RNAs sebastien_vigneau gwallau guhjy timflutre galka8_diploma jbhiatt idonaldson xingxu natstreet mhamada microRNA heliopais misonneh valeriehilgers diaz0058 lp2 druvus
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted by 13 people BioNica mhamada treangen iSEEM pradiptaray zwang nuin timflutre druvus djkt aprasad gjuggler emptyhb
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted by 14 people druvus treangen mdimmic rvosa timflutre stajich zwang cabbagezs groepl Bioinformatics FAB-lab yoanjacquemin marti smbe2008
	SSAHA: a fast search method for large DNA databases. [My Copy] Genome research, Vol. 11, No. 10. (1 October 2001), pp. 1725-1729. by Z. Ning, A. J. Cox, J. C. Mullikin posted by 18 people torfinnnome stharward adthrasher mattwa jmanning2k n00c jmcq APRegier natstreet druvus treangen umit mmartin timflutre bpb j3xucite lp2 dmc
	MAFFT version 5: improvement in accuracy of multiple sequence alignment. [My Copy] Nucleic acids research, Vol. 33, No. 2. (2005), pp. 511-518. by K. Katoh, K. Kuma, H. Toh, T. Miyata posted by 10 people hryk BioNica druvus treangen CharlesM caporaso rabio timflutre biomedical-nlp urgi
	Logarithmic gap costs decrease alignment accuracy [My Copy] BMC Bioinformatics, Vol. 7 (05 December 2006), 527. by Reed A. Cartwright posted by 6 people timflutre druvus treangen dpollard groepl EisenLab
	MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. [My Copy] Nucleic acids research, Vol. 30, No. 14. (15 July 2002), pp. 3059-3066. by Kazutaka Katoh, Kazuharu Misawa, Kei-ichi Kuma, Takashi Miyata posted by 9 people biomcgary calderonv natstreet druvus treangen rabio timflutre marti urgi
	A novel method for multiple alignment of sequences with repeated and shuffled elements [My Copy] Genome Res., Vol. 14, No. 11. (1 November 2004), pp. 2336-2346. by Benjamin Raphael, Degui Zhi, Haixu Tang, Pavel Pevzner posted by 3 people druvus treangen timflutre
	PILER: identification and classification of genomic repeats. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (June 2005) by R. C. Edgar, E. W. Myers posted by 8 people natstreet mmartin druvus treangen jackjackjjj timflutre urgi yoanjacquemin
	De novo identification of repeat families in large genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1, No. suppl_1. (1 June 2005), pp. i351-358. by Alkes L. Price, Neil C. Jones, Pavel A. Pevzner posted by 9 people isimpson sujaikumar natstreet treangen druvus aprasad hoangmit timflutre urgi
	Alignment-free sequence comparison-a review. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 4. (1 March 2003), pp. 513-523. by Susana Vinga, Jonas Almeida posted by 5 people mox timflutre druvus treangen dario
	The many faces of sequence alignment [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 6-22. by Serafim Batzoglou posted by 14 people nuttpo druvus n00c pimmy timflutre BioNica treangen balajis dpollard sdvillal Bioinformatics EisenLab gjuggler yoanjacquemin
	Mobyle: a new full web bioinformatics framework. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 22. (15 November 2009), pp. 3005-3011. by Bertrand Néron, Hervé Ménager, Corinne Maufrais, et al.Nicolas Joly, Julien Maupetit, Sébastien Letort, Sébastien Carrere, Pierre Tuffery, Catherine Letondal posted by 12 people reyez inesdesantiago daforerog gwallau guhjy sebastien_vigneau dullhunk n00c rdiaz nuin pekrau druvus
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted by 24 people hzoltan daveGerrard daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda Journal picks adamjamesreid Bioinformatics dswan mlog LabDros gwallau ewilban1 ThomasDOtto jasontsai BergmanLab polivares natstreet druvus
	Fitness and its role in evolutionary genetics [My Copy] Nat Rev Genet, Vol. 10, No. 8. (23 August 2009), pp. 531-539. by H. Allen Orr posted by 17 people CulCog PabloMarin Zephyrus robfsouza xingxu pkonings gwallau leliavski natstreet shikin Annab psique Journal picks ppgardne druvus leemond31 nuin
	Darwinian evolution in the light of genomics [My Copy] Nucl. Acids Res., Vol. 37, No. 4. (1 March 2009), pp. 1011-1034. by Eugene V. Koonin posted by 26 people jasontsai vvoorr Journal picks qayub michaelbarton polivares pawelsobko Zephyrus gwallau LabDros dayjm nurban natstreet druvus biomcgary mlog tomhebbron haloin VGreiff lizbiogen inquil lp2 gjuggler guhjy sebastien_vigneau sjcockell
	Fundamental concepts in genetics: Genetics and the understanding of selection [My Copy] Nat Rev Genet, Vol. 10, No. 2. (2 February 2009), pp. 83-93. by Laurence D. Hurst posted by 18 people cbforrest raiyar jmeppley jbhiatt ilyashl ramiro2k bcondon R.E.A.D Zephyrus LabDros gwallau xingxu gjuggler misonneh lp2 druvus pkonings nuin
	Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses [My Copy] FASEB J., Vol. 22, No. 2. (1 February 2008), pp. 338-342. by Matthew E. Falagas, Eleni I. Pitsouni, George A. Malietzis, Georgios Pappas posted by 66 people sfalsharif cyounkin Tomste cphelps aaltenburger radagabriel Nursing Essentials bhengeveld pick600 mawds khan004 niathena jeffcrow jmparks R_C_Cordeiro lyss fabiopietrucci tjpp tarokiritani meikipp reginacastro nuttpo CulCog msampson rodney abc623 tnhh jshigh LabDros gwallau sniklas MurphysLab Integrative Expertise for Global Health jago teachingaging thegoose bertelsen bibliotecaria jenniferwilms beska rickl druvus ceft tanyacovi6 carelcad LEONRANGEL microcosmosinagotable MARCOUNAM eudominguezmartin artaban421 frohike nhoussos daforerog lesikv simdoc lmichan rrbarb A_Hoogendam cyrille hpiwowar JSicot Gaetan ashko lilith guhjy dullhunk
	On the need for widespread horizontal gene transfers under genome size constraint [My Copy] Biology Direct, Vol. 4, No. 1. (25 August 2009), 28. by Herve Isambert, Richard Stein posted by 3 people treangen gwallau aprasad
	Horizontal gene transfer in eukaryotic evolution [My Copy] Nature Reviews Genetics, Vol. 9, No. 8. (01 August 2008), pp. 605-618. by Patrick J. Keeling, Jeffrey D. Palmer posted by 10 people mordiano kmachemer gwallau tomhebbron fungal dcolosi treangen Anachff dakelley bootsy
	A Role for RNAi in the Selective Correction of DNA Methylation Defects [My Copy] Science (30 January 2009), 1165313. by Felipe K. Teixeira, Fabiana Heredia, Alexis Sarazin, et al.Francois Roudier, Martine Boccara, Constance Ciaudo, Corinne Cruaud, Julie Poulain, Maria Berdasco, Marioi F. Fraga, Olivier Voinnet, Patrick Wincker, Manel Esteller, Vincent Colot posted by 7 people gwallau rs timflutre biomcgary fenghezi jbhiatt AlesK
	Transposable elements and the evolution of regulatory networks [My Copy] Nat Rev Genet, Vol. 9, No. 5. (27 May 2008), pp. 397-405. by Cedric Feschotte posted by 14 people robfsouza fhalbrit balicea gwallau djkt bootsy idonaldson BergmanLab cmzmasek smbe2008 eskay roys pradiptaray timflutre
	Accumulation of Transposable Elements in the Genome of Drosophila melanogaster is Associated with a Decrease in Fitness [My Copy] J Hered, Vol. 95, No. 4. (1 July 2004), pp. 284-290. by E. G. Pasyukova, S. V. Nuzhdin, T. V. Morozova, T. F. C. Mackay posted by 2 people gwallau timflutre
	Models of the population genetics of transposable elements [My Copy] Genetics Research, Vol. 85, No. 03. (June 2005), pp. 171-181. by C. Arnaud le Rouzi, E. Grégory Decelier posted by 2 people gwallau timflutre
	The first steps of transposable elements invasion: parasitic strategy vs. genetic drift. [My Copy] Genetics, Vol. 169, No. 2. (1 February 2005), pp. 1033-1043. by Arnaud Le Rouzic, Pierre Capy posted by 3 people gwallau jlncdr timflutre
	Repbase Update, a database of eukaryotic repetitive elements. [My Copy] Cytogenetic and genome research, Vol. 110, No. 1-4. (2005), pp. 462-467. by J. Jurka, V. V. Kapitonov, A. Pavlicek, P. Klonowski, O. Kohany, J. Walichiewicz posted by 7 people gwallau natstreet AaronDarling timflutre nume urgi yoanjacquemin
	Role of transposable elements in heterochromatin and epigenetic control [My Copy] Nature, Vol. 430, No. 6998. (22 July 2004), pp. 471-476. by Zachary Lippman, Anne-Valerie Gendrel, Michael Black, et al.Matthew W. Vaughn, Neilay Dedhia, W. Richard Mccombie, Kimberly Lavine, Vivek Mittal, Bruce May, Kristin D. Kasschau, James C. Carrington, Rebecca W. Doerge, Vincent Colot, Rob Martienssen posted by 4 people gwallau polivares briann timflutre
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted by 36 people tomatoe45 rneches LabDros gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet References for 3DSim paper Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle Radiation_Damage Stressosome biomedical-nlp urgi Ema
	Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists [My Copy] Infection, Genetics and Evolution, Vol. 9, No. 4. (July 2009), pp. 656-670. by Gabriela Aguileta, Guislaine Refrégier, Roxana Yockteng, Elisabeth Fournier, Tatiana Giraud posted by 4 people GustavoLacerda druvus treangen robsyme
	Population genomics: diversity and virulence in the Neisseria [My Copy] Current Opinion in Microbiology, Vol. 11, No. 5. (October 2008), pp. 467-471. by M. Maiden posted by 3 people katholt druvus treangen
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted by 14 people pimmy swtimmer dimka mhamada reyez treangen markusd j3xucite nuin kshameer druvus chad_davis taguchi pansapiens
	Complex fate of paralogs [My Copy] BMC Evolutionary Biology, Vol. 8, No. 1. (2008) by Radek Szklarczyk, Martijn Huynen, Berend Snel posted by 5 people swp09 druvus treangen kshameer phoenixzxl
	Comparison of methods for estimating the nucleotide substitution matrix [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Maribeth Oscamou, Daniel Mcdonald, Von B. Yap, Gavin Huttley, Manuel Lladser, Rob Knight posted by 5 people sconlan nklee nuin treangen druvus
	Building communities one bacterium at a time [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 47. (25 November 2008), pp. 18075-18076. by Douglas B. Weibel posted by 2 people druvus treangen
	Phylogenetic reconstruction from transpositions. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by F. Yue, M. Zhang, J. Tang posted by 2 people druvus treangen
	Automatic extraction of reliable regions from multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 5. (2007) by Timo Lassmann, Erik Sonnhammer posted by 2 people druvus treangen
	Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. [My Copy] Journal of experimental zoology. Part B. Molecular and developmental evolution, Vol. 304, No. 1. (15 January 2005), pp. 64-74. by S. R. Gadagkar, M. S. Rosenberg, S. Kumar posted by 2 people druvus treangen
	Ancestral sequence alignment under optimal conditions. [My Copy] BMC bioinformatics, Vol. 6 (2005) by A. K. Hudek, D. G. Brown posted by 2 people druvus treangen
	Detecting Repeat Families in Incompletely Sequenced Genomes [My Copy] Algorithms in Bioinformatics (2008), pp. 342-353. by Amgarten, Jens Stoye posted by 3 people natstreet druvus treangen
	Computational reconstruction of ancestral DNA sequences. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 422 (2008), pp. 171-184. by M. Blanchette, A. B. Diallo, E. D. Green, W. Miller, D. Haussler posted by 2 people druvus treangen
	Comparative analysis of CRISPR loci in lactic acid bacteria genomes. [My Copy] International journal of food microbiology (15 July 2008) by Philippe Horvath, Anne-Claire C. Coûté-Monvoisin, Dennis A A. Romero, Patrick Boyaval, Christophe Fremaux, Rodolphe Barrangou posted by 2 people druvus treangen
	Comparison of Correspondence Analysis Methods for Synonymous Codon Usage in Bacteria [My Copy] DNA Res (21 October 2008), dsn028. by Haruo Suzuki, Celeste J. Brown, Larry J. Forney, Eva M. Top posted by 3 people rshe druvus treangen
	Comparative analysis of Acinetobacters: three genomes for three lifestyles. [My Copy] PLoS ONE, Vol. 3, No. 3. (2008) by D. Vallenet, P. Nordmann, V. Barbe, et al.L. Poirel, S. Mangenot, E. Bataille, C. Dossat, S. Gas, A. Kreimeyer, P. Lenoble, S. Oztas, J. Poulain, B. Segurens, C. Robert, C. Abergel, J. M. Claverie, D. Raoult, C. Médigue, J. Weissenbach, S. Cruveiller posted by 2 people druvus treangen
	Ecology and genomics of Bacillus subtilis. [My Copy] Trends in microbiology, Vol. 16, No. 6. (June 2008), pp. 269-275. by A. M. Earl, R. Losick, R. Kolter posted by 2 people druvus treangen
	Robust E-values for gapped local alignments. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 13, No. 4. (May 2006), pp. 882-896. by D. Metzler posted by 2 people druvus treangen
	An improved string composition method for sequence comparison [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 6. (2008), S15. by Guoqing Lu, Shunpu Zhang, Xiang Fang posted by 2 people druvus treangen
	A Bayesian approach to the estimation of ancestral genome arrangements. [My Copy] Molecular phylogenetics and evolution, Vol. 36, No. 2. (August 2005), pp. 214-223. by B. Larget, J. B. Kadane, D. L. Simon posted by 3 people AaronDarling druvus treangen
	DNAPlotter: circular and linear interactive genome visualization [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 119-120. by Tim Carver, Nick Thomson, Alan Bleasby, Matthew Berriman, Julian Parkhill posted by 15 people kshameer jandot BergmanLab cisevol ewilban1 orzenil Bioinformatics dswan barriot guhjy nuin natstreet GustavoLacerda druvus treangen
	Pseudofam: the pseudogene families database [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D738-743. by Hugo Y. K. Lam, Ekta Khurana, Gang Fang, et al.Philip Cayting, Nicholas Carriero, Kei-Hoi Cheung, Mark B. Gerstein posted by 3 people guhjy druvus treangen
	Evolutionary patterns in prokaryotic genomes. [My Copy] Current opinion in microbiology, Vol. 11, No. 5. (October 2008), pp. 454-460. by E. P. Rocha posted by 2 people druvus treangen
	e-Science: relieving bottlenecks in large-scale genome analyses [My Copy] Nat Rev Micro, Vol. 6, No. 12. (December 2008), pp. 948-954. by Tracy Craddock, Colin R. Harwood, Jennifer Hallinan, Anil Wipat posted by 10 people n00c fisherp fgibson druvus dullhunk guhjy richardbickerton treangen shuzhens jmeppley
	The rise and fall of deleterious mutation. [My Copy] Research in microbiology, Vol. 158, No. 10. (December 2007), pp. 779-786. by K. J. Balbi, E. J. Feil posted by 2 people treangen druvus
	Whole-genome mutational biases in bacteria. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (10 November 2008) by Peter A A. Lind, Dan I I. Andersson posted by 3 people druvus treangen gjuggler
	Testing for Neutrality in Samples With Sequencing Errors [My Copy] Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1409-1424. by Guillaume Achaz posted by 4 people druvus treangen BioNica skembel
	TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops [My Copy] Bioinformatics (4 November 2008), btn575. by Iain Milne, Dominik Lindner, Micha Bayer, et al.Dirk Husmeier, Grainne Mcguire, David F. Marshall, Frank Wright posted by 3 people treangen nuin druvus
	Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis [My Copy] Brief Bioinform (29 October 2008), bbn045. by Mohamed R. Aniba, Sophie Siguenza, Anne Friedrich, et al.Frederic Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie D. Thompson posted by 4 people guhjy treangen nuin druvus
	Stability of Multiple Alignments and Phylogenetic Trees: An Analysis of ABC-Transporter Proteins [My Copy] Algorithms for Molecular Biology, Vol. 3 (06 November 2008), 15. by Andreas W. M. Dress, Burkhard Morgenstern, Holger Wagner posted by 3 people treangen nuin druvus
	Syntenator: multiple gene order alignments with a gene-specific scoring function. [My Copy] Algorithms for molecular biology : AMB, Vol. 3 (06 November 2008), 14. by Christian Rödelsperger, Christoph Dieterich posted by 8 people Ensembl Compara citations avilella Neeperando treangen maximilianh BergmanLab cisevol druvus
	The Organization of the Bacterial Genome [My Copy] Annual Review of Genetics, Vol. 42, No. 1. (2008), pp. 211-233. by Eduardo P. C. Rocha posted by 10 people tomd66 Vincent_Rouilly behindtherabbit ianholmes neils druvus treangen inesdesantiago zwang ocs
	Will the enigma of Francisella tularensis virulence soon be solved? [My Copy] Trends in Microbiology, Vol. 11, No. 3. (March 2003), pp. 118-123. by R. Titball posted by 2 people treangen druvus
	Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18 [My Copy] PLoS ONE, Vol. 3, No. 10. (17 October 2008), e3427. by Daniela Puiu, Steven L. Salzberg posted by 2 people treangen druvus
	Multiple genome alignment for identifying the core structure among moderately related microbial genomes [My Copy] BMC Genomics, Vol. 9 (31 October 2008), 515. by Ikuo Uchiyama posted by 3 people azazello druvus treangen
	FastBLAST: Homology Relationships for Millions of Proteins [My Copy] PLoS ONE, Vol. 3, No. 10. (31 October 2008), e3589. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted by 5 people AaronDarling treangen natstreet druvus reyez
	Large-scale assignment of orthology: back to phylogenetics? [My Copy] Genome Biology, Vol. 9, No. 10. (2008) by Toni Gabaldon posted by 10 people cerca cgaugain GustavoLacerda treangen maximilianh samgj natstreet druvus APRegier barriot
	Microbial genome data resources [My Copy] Current Opinion in Biotechnology, Vol. 18, No. 3. (June 2007), pp. 267-272. by V. Markowitz posted by 3 people richardbickerton treangen druvus
	Comparative genomics and the evolution of prokaryotes [My Copy] Trends in Microbiology, Vol. 15, No. 3. (March 2007), pp. 135-141. by S. Abby, V. Daubin posted by 2 people treangen druvus
	Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. [My Copy] Genome research, Vol. 18, No. 11. (10 November 2008), pp. 1814-1828. by Benedict Paten, Javier Herrero, Kathryn Beal, Stephen Fitzgerald, Ewan Birney posted by 9 people gdb mhamada natstreet druvus davfre rschulz treangen Neeperando gjuggler
	Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by J. Soh, P. M. Gordon, M. L. Taschuk, et al.A. Dong, A. C. Ah-Seng, A. L. Turinsky, C. W. Sensen posted by 12 people dcolosi treangen guhjy Mycology stajich barriot Roswell Cancer Crosstalk Zephyrus joaocarrico GeeSharpMinor neils druvus
	Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2672-2676. by T. Carver, M. Berriman, A. Tivey, et al.C. Patel, U. Böhme, B. G. Barrell, J. Parkhill, M. A. Rajandream posted by 10 people SIMR bioinformatics malcook guhjy dswan neils barriot pengchy jamselem treangen druvus
	Tools for simulating evolution of aligned genomic regions with integrated parameter estimation [My Copy] Genome Biology, Vol. 9, No. 10. (08 October 2008), R147. by Avinash Varadarajan, Robert Bradley, Ian Holmes posted by 10 people inquil mhamada markusd nuin djkt treangen gjuggler pengchy druvus aprasad
	Multiple sequence alignment. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 143-161. by W. Pirovano, J. Heringa posted by 2 people druvus treangen
	M-Coffee: combining multiple sequence alignment methods with T-Coffee. [My Copy] Nucleic acids research, Vol. 34, No. 6. (2006), pp. 1692-1699. by I. M. Wallace, O. O'Sullivan, D. G. Higgins, C. Notredame posted by 2 people treangen druvus
	Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 10039-10044. by Tal Dagan, Yael Artzy-Randrup, William Martin posted by 4 people treangen AaronDarling tomhebbron druvus
	StatAlign: An Extendable Software Package for Joint Bayesian Estimation of Alignments and Evolutionary Trees. [My Copy] Bioinformatics (Oxford, England) (27 August 2008) by Adám Novák, István Miklós, Rune Lyngsø, Jotun Hein posted by 6 people vivianm treangen Mycology stajich druvus nuin
	Computational Molecular Evolution (Oxford Series in Ecology and Evolution) [My Copy] (07 December 2006) by Ziheng Yang posted by 6 people nuttpo ilyashl treangen gjuggler druvus CharlesM
	Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. [My Copy] Annual review of genetics, Vol. 40 (2006), pp. 307-333. by R. Moxon, C. Bayliss, D. Hood posted by 3 people cambray druvus treangen
	Model-based prediction of sequence alignment quality [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2165-2171. by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka posted by 4 people druvus treangen nuin marck
	High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi [My Copy] Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993. by Kathryn E. Holt, Julian Parkhill, Camila J. Mazzoni, et al.Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J. Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan posted by 11 people azazello felsani usagi-kirin lewista treangen abizar druvus caseybrown pengchy Stew aconesa
	Comparative bacterial proteomics: analysis of the core genome concept. [My Copy] PloS one, Vol. 3, No. 2. (6 February 2008), e1542. by Stephen J. Callister, Lee Ann A. McCue, Joshua E. Turse, et al.Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton posted by 7 people vikramjind azazello treangen druvus jlgreen Green Lab iSEEM
	Dynamics of Genome Rearrangement in Bacterial Populations [My Copy] PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128. by Aaron E. Darling, István Miklós, Mark A. Ragan posted by 9 people nyyu AaronDarling lewista treangen neils druvus Ema djkt jjray
	How Well Does the HoT Score Reflect Sequence Alignment Accuracy? [My Copy] Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1576-1580. by Barry G. Hall posted by 8 people druvus treangen nuin gjuggler bpcusack stajich Mycology cabbagesofdoom
	Noisy: identification of problematic columns in multiple sequence alignments [My Copy] Algorithms for Molecular Biology, Vol. 3 (24 June 2008), 7. by Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, et al.Stefan Grunewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler posted by 3 people druvus treangen gjuggler
	A probabilistic model of local sequence alignment that simplifies statistical significance estimation. [My Copy] PLoS computational biology, Vol. 4, No. 5. (30 May 2008), e1000069. by Sean R. Eddy posted by 10 people cmzmasek druvus vwchan treangen BioNica saerni dakelley aramesh2 Ema gdb
	The new paradigm of flow cell sequencing. [My Copy] Genome research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by R. A. Holt, S. J. Jones posted by 19 people mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali stajich Mycology reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr
	Applied Statistics Using SPSS, STATISTICA, MATLAB and R [My Copy] (20 July 2007) by Joaquim posted by 3 people treangen natstreet druvus
	The Bacterial Chromosome [My Copy] Critical Reviews in Biochemistry and Molecular Biology, Vol. 43, No. 2. (2008), pp. 89-134. by Milton H. Saier posted by 4 people treangen druvus microbiology_nijmegen Huub_odc
	JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes [My Copy] BMC Bioinformatics, Vol. 9 (01 April 2008), 177. by Michael Richter, Thierry Lombardot, Ivaylo Kostadinov, et al.Renzo Kottmann, Melissa B. Duhaime, Jorg Peplies, Frank O. Glockner posted by 6 people Bioinformatics Thaverkamp treangen druvus wisdom_love beatrizfernandez
	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? [My Copy] BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95. by Stefanie Hartmann, Todd J. Vision posted by 10 people sriesenfeld iSEEM skembel treangen natstreet druvus stajich Mycology Patola aprasad
	PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell Brittnacher posted by 5 people azazello druvus treangen neils maximilianh
	Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. [My Copy] PloS one, Vol. 2, No. 9. (26 September 2007), e947. by Stephen M. Beckstrom-Sternberg, Raymond K. Auerbach, Shubhada Godbole, et al.John V. Pearson, James S. Beckstrom-Sternberg, Zuoming Deng, Christine Munk, Kristy Kubota, Yan Zhou, David Bruce, Jyothi Noronha, Richard H. Scheuermann, Aihui Wang, Xianying Wei, Jianjun Wang, Jicheng Hao, David M. Wagner, Thomas S. Brettin, Nancy Brown, Paul Gilna, Paul S. Keim posted by 4 people ssiddara treangen Xavier druvus
	MEGAN analysis of metagenomic data. [My Copy] Genome research, Vol. 17, No. 3. (March 2007), pp. 377-386. by Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster posted by 17 people taylor73 esyoun dakelley Thaverkamp druvus idoerg guhjy treangen jmeppley azazello wenhan carpi alexl mjetten anammox microbiology_nijmegen hpaces
	A comparison of common programming languages used in bioinformatics [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 82. by Mathieu Fourment, Michael Gillings posted by 21 people reyez antonkratz daforerog treangen natstreet nlapalu druvus jamselem dullhunk laughcry ibuch urgi sci91078 renatomilani xili03 phoenixzxl guhjy chad_davis barry Bioinformatics structural_bioinformatics
	Confidence in comparative genomics. [My Copy] Genome research, Vol. 18, No. 2. (1 February 2008), pp. 199-200. by Elliott H. Margulies posted by 8 people natstreet druvus pengchy treangen djkt xingxu maximilianh boudinot
	Persistence drives gene clustering in bacterial genomes [My Copy] BMC Genomics, Vol. 9 (07 January 2008), 4. by Gang Fang, Eduardo P. C. Rocha, Antoine Danchin posted by 6 people nikkiwithers druvus treangen barriot evodeva saraballouz
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted by 19 people l00cas vprieto Copper_Calcio TLVincent tomjad BioNica udivi Keksle hpm druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie marck
	A reality check for alignments and trees [My Copy] Trends in Genetics, Vol. 23, No. 10. (October 2007), pp. 478-480. by William Martin, Mayo Roettger, Peter J. Lockhart posted by 3 people treangen druvus hpaces
	Gene duplication and the adaptive evolution of a classic genetic switch [My Copy] Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681. by Chris T. Hittinger, Sean B. Carroll posted by 19 people gjuggler sameersoi gipsoma wangbo dakelley druvus treangen mcphee dpollard dchughes djkt biomcgary EisenLab blobbybirdman cis-regulatory-evolution kjlipin skumagai clearbluespring bpcusack
	The bacterial species definition in the genomic era. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1475. (29 November 2006), pp. 1929-1940. by K. T. Konstantinidis, A. Ramette, J. M. Tiedje posted by 10 people druvus AaronDarling skembel treangen iSEEM jmeppley kinestetika Microbial-Ecology microbiology_nijmegen Thaverkamp