Maciej Paszkowski-Rogacz's Top Recommendations

These recommendations were last updated 19 minutes ago.

	Pvclust: an R package for assessing the uncertainty in hierarchical clustering [My Copy] Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542. by Ryota Suzuki, Hidetoshi Shimodaira posted by 11 people walshtp ltitodem druvus jfr maryee wnpx josepe ghattem elfar quianominorleo briordan
	Clustering microarray gene expression data using weighted Chinese restaurant process. [My Copy] Bioinformatics (9 June 2006) by Zhaohui Qin posted by 4 people jfr maryee archroad bayes
	Visualization methods for statistical analysis of microarray clusters. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. A. Hibbs, N. C. Dirksen, K. Li, O. G. Troyanskaya posted by 6 people guhjy jfr maryee smbaxtersf waszak ndiaz
	Towards precise classification of cancers based on robust gene functional expression profiles [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Zheng Guo, Tianwen Zhang, Xia Li, et al.Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao posted by 4 people jfr maryee eckart_bindewald macavity1g
	Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets [My Copy] Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20. by Benjamin P. Lewis, Christopher B. Burge, David P. Bartel posted by 18 people danaiancu sterovetta ronglais pengchy jfr marcius maryee eckart_bindewald tardigrade mortenlindow andersbj mtagaya microRNA BioinfoCIPF SGU-CIPF heliopais Alexander_Kanitz elfar
	Prediction of mammalian microRNA targets. [My Copy] Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798. by B. P. Lewis, I. H. Shih, M. W. Jones-Rhoades, D. P. Bartel, C. B. Burge posted by 11 people giovenko jfr maryee eckart_bindewald mortenlindow kt arcticrasta mtagaya akiezun Bioinformatics microRNA
	Towards a proteome-scale map of the human protein-protein interaction network [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1173-1178. by Jean-Francois Rual, Kavitha Venkatesan, Tong Hao, et al.Tomoko Hirozane-Kishikawa, Amelie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S. Goldberg, Lan V. Zhang, Sharyl L. Wong, Giovanni Franklin, Siming Li, Joanna S. Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S. Sikorski, Jean Vandenhaute, Huda Y. Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E. Cusick, David E. Hill, Frederick P. Roth, Marc Vidal posted by 25 people frohike yaredo Complex Networks fesousa aelef dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Bioinformatics Evangelia csanford ksiek
	Gene-set analysis and reduction [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 24-34. by Irina Dinu, John D. Potter, Thomas Mueller, et al.Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, Yutaka Yasui posted by 10 people zufar jfr ipark-kaist renatomilani shikin tmmurali guhjy ihpark nuin ptrobajo
	Cancer outlier detection based on likelihood ratio test [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2193-2199. by Jianhua Hu posted by 4 people guhjy jfr nuin ihpark
	Robust and efficient identification of biomarkers by classifying features on graphs. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 18. (15 September 2008), pp. 2023-2029. by TaeHyun Hwang, Hugues Sicotte, Ze Tian, et al.Baolin Wu, Jean-Pierre P. Kocher, Dennis A. Wigle, Vipin Kumar, Rui Kuang posted by 11 people mdharsee frohike VGreiff guhjy jfr ihpark nuin GeeSharpMinor mitko AbnerCYH sg45653
	Genomic outlier profile analysis: mixture models, null hypotheses, and nonparametric estimation. [My Copy] Biostatistics (Oxford, England) (6 June 2008) by Debashis Ghosh, Arul M M. Chinnaiyan posted by 3 people jfr ihpark guhjy
	MOST: detecting cancer differential gene expression [My Copy] Biostat (29 November 2007), kxm042. by Heng Lian posted by 4 people ipark-kaist jfr ihpark aviad_work
	A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Kartik M. Mani, Celine Lefebvre, Kai Wang, et al.Wei K. Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano posted by 8 people ipark-kaist ihpark jfr tmmurali ealloza shikin dap5087 dragonrez
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted by 35 people gowtham yaredo Complex Networks fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus Jarman Lab ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac Bioinformatics shikin oelemento roys GeneGo ptrobajo dap5087 saman_vp verdicchio
	Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2273-2280. by Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sultmann, Achim Tresch posted by 6 people meanerelk ihpark jfr rdiaz ealloza BioinfoCIPF
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted by 15 people bertelsen ptrobajo guhjy tonamswish ipark-kaist jfr aviad_work ihpark ealloza djkt BioinfoCIPF waghsk heliopais giovenko magusina
	How accurately can we control the FDR in analyzing microarray data? [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1730-1736. by S. H. Jung, W. Jang posted by 3 people ihpark jfr justescaped
	Cancer outlier differential gene expression detection. [My Copy] Biostatistics (4 October 2006) by Baolin Wu posted by 4 people ipark-kaist ihpark jfr shigepong
	Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648. by S. A. Tomlins, D. R. Rhodes, S. Perner, et al.S. M. Dhanasekaran, R. Mehra, X. W. Sun, S. Varambally, X. Cao, J. Tchinda, R. Kuefer, C. Lee, J. E. Montie, R. B. Shah, K. J. Pienta, M. A. Rubin, A. M. Chinnaiyan posted by 9 people ipark-kaist absterga ihpark kentsis jfr tuck emb51 oelemento winterschlaefer
	Modeling and managing experimental data using FuGE. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 3. (14 June 2009), pp. 239-251. by Andrew R. Jones, Allyson L. Lister, Leandro Hermida, et al.Peter Wilkinson, Martin Eisenacher, Khalid Belhajjame, Frank Gibson, Phil Lord, Matthew Pocock, Heiko Rosenfelder, Javier Santoyo-Lopez, Anil Wipat, Norman W. Paton posted by 8 people jfr mtaschuk lptolik joergkurtwegner CameronNeylon allysonlister fgibson dullhunk
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted by 21 people lptolik jfr freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan baker-group sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf zwang friendpine
	A method for constructing a confidence bound for the actual error rate of a prediction rule in high dimensions [My Copy] Biostat, Vol. 10, No. 2. (1 April 2009), pp. 282-296. by Kevin K. Dobbin posted by 4 people jfr rdiaz lptolik djkt
	WGCNA: an R package for weighted correlation network analysis [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 559. by Peter Langfelder, Steve Horvath posted by 19 people enelkinsan jeremymiller daforerog sficklin Bioinformatics lwaldron jfr ekotelnikova Bioinformatics - CRUK slv23 rdiaz guhjy natstreet druvus cswinburne lptolik jmeppley irinamohorianu pengchy
	Ensembl 2009 [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D690-697. by T. J. P. Hubbard, B. L. Aken, S. Ayling, et al.B. Ballester, K. Beal, E. Bragin, S. Brent, Y. Chen, P. Clapham, L. Clarke, G. Coates, S. Fairley, S. Fitzgerald, J. Fernandez-Banet, L. Gordon, S. Graf, S. Haider, M. Hammond, R. Holland, K. Howe, A. Jenkinson, N. Johnson, A. Kahari, D. Keefe, S. Keenan, R. Kinsella, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, K. Megy, P. Meidl, B. Overduin, A. Parker, B. Pritchard, D. Rios, M. Schuster, G. Slater, D. Smedley, W. Spooner, G. Spudich, S. Trevanion, A. Vilella, J. Vogel, S. White, S. Wilder, A. Zadissa, E. Birney, F. Cunningham, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, J. Herrero, A. Kasprzyk, G. Proctor, J. Smith, S. Searle, P. Flicek posted by 11 people timhubbard taroleo ilyashl idoerg cpwardell jfr kittipat lptolik coela birney nlapalu
	CleanEx: new data extraction and merging tools based on MeSH term annotation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D880-884. by Viviane Praz, Philipp Bucher posted by 5 people lmichan jfr lptolik nuin guhjy
	Power enhancement via multivariate outlier testing with gene expression arrays. [My Copy] Bioinformatics (Oxford, England) (16 November 2008) by Adam Asare, Zhong Gao, Vincent J J. Carey, Richard Wang, Vicki Seyfert-Margolis posted by 4 people jfr rschulz lptolik guhjy
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted by 29 people bsamal bertelsen giovenko dipenps holecm lwaldron jfr ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit lptolik balicea daforerog Roswell Cancer Crosstalk Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor
	EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 493. by G. Barton, J. Abbott, N. Chiba, et al.D. W. Huang, Y. Huang, M. Krznaric, J. Mack Smith, A. Saleem, B. T. Sherman, B. Tiwari, C. Tomlinson, T. Aitman, J. Darlington, L. Game, M. J. E. Sternberg, S. A. Butcher posted by 12 people gpyle pengchy jfr dullhunk rdiaz guhjy shikin nuin Terkko lptolik GeeSharpMinor dansullivanblk
	Determining gene expression on a single pair of microarrays [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Robert Reid, Anthony Fodor posted by 7 people jfr dswan guhjy lptolik rschulz barriot nuin
	Identifying differential correlation in gene/pathway combinations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (18 November 2008), 488. by Rosemary Braun, Leslie Cope, Giovanni Parmigiani posted by 12 people dolchan dipenps zufar jfr shikin mdstobbe imina rdiaz renatomilani lptolik barriot ptrobajo
	The database of experimentally supported targets: a functional update of TarBase. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (27 January 2009), gkn809. by Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou posted by 8 people daforerog lptolik lp2 druvus guhjy jfr microRNA heliopais
	ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets [My Copy] Genome Biology, Vol. 9, No. 11. (2008) by Patrick Killion, Vishwanath Iyer posted by 10 people jfr aramesh2 guhjy rdiaz pengchy lptolik barriot natstreet shikin druvus
	Implementation of GenePattern within the Stanford Microarray Database. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (25 January 2009) by J. Hubble, J. Demeter, H. Jin, et al.M. Mao, M. Nitzberg, T. B. Reddy, F. Wymore, Z. K. Zachariah, G. Sherlock, C. A. Ball posted by 3 people jfr lptolik guhjy
	Shortest Path analysis using Partial Correlations for classifying gene functions from gene expression data. [My Copy] Bioinformatics (Oxford, England) (3 November 2008) by A M M. Fitch, M B B. Jones posted by 7 people jfr Borelli druvus lptolik rdiaz guhjy Doug
	A Novel Signaling Pathway Impact Analysis (SPIA) [My Copy] Bioinformatics (5 November 2008), btn577. by Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et al.Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong J. Kim, Juan P. Kusanovic, Roberto Romero posted by 10 people ipark-kaist bertelsen jfr heliopais lptolik ConklinLab AlexanderPico thomaskelder guhjy renatomilani
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted by 9 people sotacam kemalpak msuarezdiez jfr pengchy lptolik druvus isimpson sjung
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted by 8 people dolchan jfr diamantis imina saket renatomilani lptolik jonesn
	Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 462. by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted by 8 people HermanSontrop jfr imina kittipat lptolik nuin druvus isimpson
	minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 461. by Patrick Meyer, Frederic Lafitte, Gianluca Bontempi posted by 10 people sotacam jfr pengchy dswan guhjy lptolik renatomilani phoenixzxl druvus natstreet
	Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Peter Dimaggio, Scott Mcallister, Christodoulos Floudas, Xiao J. Feng, Joshua Rabinowitz, Herschel Rabitz posted by 9 people meanerelk jurgenjanes jfr cgaugain rdiaz lptolik druvus nuin barriot
	Feature selection environment for genomic applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 October 2008), 451. by Fabricio Lopes, David Martins, Roberto Cesar posted by 7 people rdiaz jfr TRHvidsten GustavoG imina lptolik operon
	BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Tim Hulsen, Jacob de Vlieg, Wynand Alkema posted by 25 people daveGerrard n00c jfr lscarafia jmeppley hessec GustavoLacerda Mycology stajich dswan polivares egonw ptrobajo guhjy jameswasmuth lptolik msampson pengchy natstreet druvus barriot Zephyrus BergmanLab cisevol thulsen
	Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. [My Copy] Bioinformatics (Oxford, England) (23 September 2008) by Jing Gao, Alex S S. Ade, V Glenn G. Tarcea, et al.Terry E E. Weymouth, Barbara R R. Mirel, H V V. Jagadish, David J J. States posted by 6 people jfr druvus lptolik Bioinformatics dswan guhjy
	PID: the Pathway Interaction Database. [My Copy] Nucleic acids research (2 October 2008) by Carl F F. Schaefer, Kira Anthony, Shiva Krupa, et al.Jeffrey Buchoff, Matthew Day, Timo Hannay, Kenneth H H. Buetow posted by 7 people lptolik jfr ajaymalik mtagaya guhjy dullhunk bootsy
	Network legos: building blocks of cellular wiring diagrams. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 7. (September 2008), pp. 829-844. by T. M. Murali, C. G. Rivera posted by 8 people bertelsen druvus guhjy jfr sjcockell tmmurali lptolik RamuAnandakrishnan
	Constructing disease-specific gene networks using pair-wise relevance metric: application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Wei Jiang, Xia Li, Shaoqi Rao, et al.Lihong Wang, Lei Du, Chuanxing Li, Chao Wu, Hongzhi Wang, Yadong Wang, Baofeng Yang posted by 2 people jfr frohike
	Combining transcriptional datasets using the generalized singular value decomposition. [My Copy] BMC bioinformatics, Vol. 9 (08 August 2008), 335. by Andreas W. Schreiber, Neil J. Shirley, Rachel A. Burton, Geoffrey B. Fincher posted by 8 people rdiaz frohike lptolik jfr rmk GeeSharpMinor shigepong dansullivanblk
	Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 334. by Peter Li, Juan Castrillo, Giles Velarde, et al.Ingo Wassink, Stian S. Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew Pocock, Carole Goble, Stephen Oliver, Douglas Kell posted by 10 people gilesvelarde pekrau fisherp zufar jfr lptolik druvus dullhunk GeeSharpMinor guhjy
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted by 27 people colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich Mycology sebk OPIG rsantana
	ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses. [My Copy] BMC bioinformatics, Vol. 9 Suppl 6 (2008) by Todd H. Stokes, J. T. Torrance, Henry Li, May D. Wang posted by 10 people daforerog PaoloRomano neils shikin jfr lptolik yas guhjy thomaskelder GeeSharpMinor
	Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. [My Copy] Nature biotechnology, Vol. 26, No. 8. (9 August 2008), pp. 941-946. by Marcelo A. German, Manoj Pillay, Dong-Hoon H. Jeong, et al.Amit Hetawal, Shujun Luo, Prakash Janardhanan, Vimal Kannan, Linda A. Rymarquis, Kan Nobuta, Rana German, Emanuele De Paoli, Cheng Lu, Gary Schroth, Blake C. Meyers, Pamela J. Green posted by 14 people danaiancu guhjy valeriehilgers natstreet inesdesantiago GustavoLacerda lptolik microRNA heliopais giovenko jfr stajich Mycology megraw
	The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks [My Copy] BMC Bioinformatics, Vol. 9 (02 May 2008), 227. by Anatolij P. Potapov, Bjorn Goemann, Edgar Wingender posted by 8 people icecrown kshameer lptolik jfr jiny bootsy shigepong joaocarrico
	The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. [My Copy] BMC bioinformatics, Vol. 8 (19 November 2007), 456. by J. Christopher Bare, Paul T. Shannon, Amy K. Schmid, Nitin S. Baliga posted by 16 people thomaskelder cwperth Thaverkamp druvus kshameer lptolik guhjy jfr dullhunk neils ryanraaum mircea NCCT Lab Reading Group srp33 selatham megraw
	Analysis of homodimeric protein interfaces by graph-spectral methods. [My Copy] Protein Eng, Vol. 15, No. 4. (April 2002), pp. 265-277. by K. V. Brinda, N. Kannan, S. Vishveshwara posted by 3 people bicko choonpeng mz2
	A gamut of loops: meandering DNA. [My Copy] Trends Biochem Sci, Vol. 30, No. 6. (June 2005), pp. 334-341. by S. Semsey, K. Virnik, S. Adhya posted by 4 people boko4ikameto afenley uz_labu_laimi mz2
	Detection of Spatial-Specific Phytochrome Responses Using Targeted Expression of Biliverdin Reductase in Arabidopsis [My Copy] Plant Physiol., Vol. 149, No. 1. (1 January 2009), pp. 424-433. by Sankalpi N. Warnasooriya, Beronda L. Montgomery posted by 1 person lptolik
	Identifying and classifying biomedical perturbations in text. [My Copy] Nucleic acids research (12 December 2008) by Raul Rodriguez-Esteban, Phoebe M M. Roberts, Matthew E E. Crawford posted by 2 people lptolik guhjy
	An Open Access Database of Genome-wide Association Results [My Copy] BMC Medical Genetics, Vol. 10, No. 1. (22 January 2009), 6. by Andrew Johnson, Christopher O'Donnell posted by 14 people ongenetics farhat gderwin daforerog guhjy lptolik logics of knowledge A_Olympia Roswell Cancer Crosstalk Zephyrus neils mchelen djkt akmanning
	How to deal with large models[quest] [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by William S. Hlavacek posted by 5 people baker-group sobolevnrm lptolik agonzale brianb
	Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach [My Copy] BMC Genomics, Vol. 10, No. 1. (20 January 2009), 32. by Marie de Tayrac, Sebastien Le, Marc Aubry, Jean Mosser, Francois Husson posted by 5 people mayercd sotacam guhjy rdiaz lptolik
	An innovative approach for testing bioinformatics programs using metamorphic testing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Tsong Y. Chen, Joshua Ho, Huai Liu, Xiaoyuan Xie posted by 12 people rdiaz lptolik Structural Biology Group TorVergata oteri guhjy nuin druvus pkonings kshameer jmeppley barriot agbiotec
	A divide-and-conquer approach to analyze underdetermined biochemical models [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 519-525. by Oliver Kotte, Matthias Heinemann posted by 3 people abhishek_tiwari lptolik guhjy
	A particle swarm pattern search method for bound constrained global optimization [My Copy] Journal of Global Optimization, Vol. 39, No. 2. (1 October 2007), pp. 197-219. by A. Vaz, Luís Vicente posted by 2 people lptolik arne
	Inductive logic: From data analysis to experimental design" in Bayesian Inference and Maximum Entropy Methods in Science and Engineering [My Copy] In Proceedings of the 21st International Workshop (2002), pp. 392-404. by Kevin H. Knuth posted by 1 person lptolik
	Studying alternative splicing regulatory networks through partial correlation analysis [My Copy] Genome Biology, Vol. 10, No. 1. (2009), R3. by Liang Chen, Sika Zheng posted by 4 people cajunsushi lptolik daforerog pengchy
	Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks [My Copy] Bioinformatics (26 December 2008), btn660. by Bai Zhang, Huai Li, Rebecca B. Riggins, et al.Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang posted by 8 people southo bertelsen lptolik mstumpf imina dolchan grahamc roys
	Supervised risk predictor of breast cancer based on intrinsic subtypes. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1160-1167. by Joel S. Parker, Michael Mullins, Maggie C. Cheang, et al.Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu, John F. Quackenbush, Inge J. Stijleman, Juan Palazzo, J. S. Marron, Andrew B. Nobel, Elaine Mardis, Torsten O. Nielsen, Matthew J. Ellis, Charles M. Perou, Philip S. Bernard posted by 4 people Zephyrus misonneh ptrobajo jfr
	Introducing molecular subtyping of breast cancer into the clinic? [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1153-1154. by Therese Sørlie posted by 2 people jfr lrust
	Gene expression signatures for colorectal cancer microsatellite status and HNPCC. [My Copy] British journal of cancer, Vol. 92, No. 12. (20 June 2005), pp. 2240-2248. by M. Kruhøffer, J. L. Jensen, P. Laiho, et al.L. Dyrskjøt, R. Salovaara, D. Arango, K. Birkenkamp-Demtroder, F. B. Sørensen, L. L. Christensen, L. Buhl, J. P. Mecklin, H. Järvinen, T. Thykjaer, F. P. Wikman, F. Bech-Knudsen, M. Juhola, N. N. Nupponen, S. Laurberg, C. L. Andersen, L. A. Aaltonen, T. F. Ørntoft posted by 1 person jfr
	Predictive signatures for chemotherapy sensitivity in breast cancer: are they ready for use in the clinic? [My Copy] European journal of cancer (Oxford, England : 1990), Vol. 45, No. 10. (July 2009), pp. 1733-1743. by Hervé Bonnefoi, Craig Underhill, Richard Iggo, David Cameron posted by 1 person jfr
	Epigenetic-genetic interactions in the APC/WNT, RAS/RAF, and P53 pathways in colorectal carcinoma. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 9. (1 May 2008), pp. 2560-2569. by Y. Suehiro, C. W. Wong, L. R. Chirieac, et al.Y. Kondo, L. Shen, C. R. Webb, Y. W. Chan, A. S. Chan, T. L. Chan, T. T. Wu, A. Rashid, Y. Hamanaka, Y. Hinoda, R. L. Shannon, X. Wang, J. Morris, J. P. Issa, S. T. Yuen, S. Y. Leung, S. R. Hamilton posted by 1 person jfr
	An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer. [My Copy] Cancer research, Vol. 68, No. 15. (1 August 2008), pp. 6084-6091. by Katherine Stemke-Hale, Ana Maria M. Gonzalez-Angulo, Ana Lluch, et al.Richard M. Neve, Wen-Lin L. Kuo, Michael Davies, Mark Carey, Zhi Hu, Yinghui Guan, Aysegul Sahin, W. Fraser Symmans, Lajos Pusztai, Laura K. Nolden, Hugo Horlings, Katrien Berns, Mien-Chie C. Hung, Marc J. van de Vijver, Vicente Valero, Joe W. Gray, René Bernards, Gordon B. Mills, Bryan T. Hennessy posted by 1 person jfr
	An integrated method for cancer classification and rule extraction from microarray data. [My Copy] Journal of biomedical science, Vol. 16 (2009) by L. T. Huang posted by 2 people Bioinformatics jfr
	Detection of KRAS Oncogene in Peripheral Blood as a Predictor of the Response to Cetuximab Plus Chemotherapy in Patients with Metastatic Colorectal Cancer [My Copy] Clinical Cancer Research, Vol. 15, No. 13. (1 July 2009), pp. 4508-4513. by Li-Chen Yen, Yung-Sung Yeh, Chao-Wen Chen, et al.Hwei-Ming Wang, Hsiang-Lin Tsai, Chien-Yu Lu, Yu-Tang Chang, Koung-Shing Chu, Shiu-Ru Lin, Jaw-Yuan Wang posted by 1 person jfr
	Epigenetic regulation of microRNA expression in colorectal cancer. [My Copy] International journal of cancer. Journal international du cancer, Vol. 125, No. 11. (1 December 2009), pp. 2737-2743. by Eva Bandres, Xabier Agirre, Nerea Bitarte, et al.Natalia Ramirez, Ruth Zarate, Jose Roman-Gomez, Felipe Prosper, Jesus Garcia-Foncillas posted by 3 people jrifon microRNA jfr
	N-Myc downstream-regulated gene 4 (NDRG4): a candidate tumor suppressor gene and potential biomarker for colorectal cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 13. (1 July 2009), pp. 916-927. by Veerle Melotte, Marjolein H. Lentjes, Sandra M. van den Bosch, et al.Debby M. Hellebrekers, Joep P. de Hoon, Kim A. Wouters, Kathleen L. Daenen, Iris E. Partouns-Hendriks, Filip Stessels, Joost Louwagie, Kim M. Smits, Matty P. Weijenberg, Silvia Sanduleanu, Carolina A. Khalid-de Bakker, Frank A. Oort, Gerrit A. Meijer, Daisy M. Jonkers, James G. Herman, Adriaan P. de Bruïne, Manon van Engeland posted by 1 person jfr
	Locked Nucleic Acid In situ Hybridization Analysis of miR-21 Expression during Colorectal Cancer Development [My Copy] Clinical Cancer Research, Vol. 15, No. 12. (15 June 2009), pp. 4009-4016. by Nobutake Yamamichi, Ryoichi Shimomura, Ken-ichi Inada, et al.Kouhei Sakurai, Takeshi Haraguchi, Yuka Ozaki, Shuji Fujita, Taketoshi Mizutani, Chihiro Furukawa, Mitsuhiro Fujishiro, Masao Ichinose, Kazuya Shiogama, Yutaka Tsutsumi, Masao Omata, Hideo Iba posted by 1 person jfr
	Evaluation of cDNA Microarray Data by Multiple Clones Mapping to the Same Transcript. [My Copy] Omics : a journal of integrative biology (28 August 2009) by Dong Wang, Chenguang Wang, Lin Zhang, et al.Hui Xiao, Xiaopei Shen, Liping Ren, Wenyuan Zhao, Guini Hong, Yuannv Zhang, Jing Zhu, Min Zhang, Da Yang, Wencai Ma, Zheng Guo posted by 1 person jfr
	Unreliable real-time PCR analysis of human endogenous retrovirus-W (HERV-W) RNA expression and DNA copy number in multiple sclerosis. [My Copy] AIDS research and human retroviruses, Vol. 25, No. 3. (March 2009) by Jeremy A. Garson, Jim F. Huggett, Stephen A. Bustin, et al.Michael W. Pfaffl, Vladimir Benes, Jo Vandesompele, Gregory L. Shipley posted by 1 person jfr
	Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets [My Copy] Brief Bioinform (23 June 2009), bbp033. by Laura L. Elo, Jukka Hiissa, Jarno Tuimala, Aleksi Kallio, Eija Korpelainen, Tero Aittokallio posted by 1 person jfr
	A colorectal cancer expression profile that includes transforming growth factor beta inhibitor BAMBI predicts metastatic potential. [My Copy] Gastroenterology, Vol. 137, No. 1. (July 2009), pp. 165-175. by Johannes Fritzmann, Markus Morkel, Daniel Besser, et al.Jan Budczies, Frauke Kosel, Felix H. Brembeck, Ulrike Stein, Iduna Fichtner, Peter M. Schlag, Walter Birchmeier posted by 1 person jfr
	Reproducible research: moving toward research the public can really trust. [My Copy] Annals of internal medicine, Vol. 146, No. 6. (20 March 2007), pp. 450-453. by Christine Laine, Steven N. Goodman, Michael E. Griswold, Harold C. Sox posted by 1 person jfr
	Effect of molecular disease subsets on disease-free survival in randomized adjuvant chemotherapy trials for estrogen receptor-positive breast cancer. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 28. (1 October 2008), pp. 4679-4683. by Lajos Pusztai, Kristine Broglio, Fabrice Andre, W. Fraser Symmans, Kenneth R. Hess, Gabriel N. Hortobagyi posted by 1 person jfr
	Gene expression profiling of human lymph node metastases and matched primary breast carcinomas: clinical implications. [My Copy] Molecular oncology, Vol. 1, No. 2. (September 2007), pp. 172-180. by Mika Suzuki, David Tarin posted by 1 person jfr
	PTEN Expression and KRAS Mutations on Primary Tumors and Metastases in the Prediction of Benefit From Cetuximab Plus Irinotecan for Patients With Metastatic Colorectal Cancer [My Copy] J Clin Oncol, Vol. 27, No. 16. (1 June 2009), pp. 2622-2629. by Fotios Loupakis, Luca Pollina, Irene Stasi, et al.Annamaria Ruzzo, Mario Scartozzi, Daniele Santini, Gianluca Masi, Francesco Graziano, Chiara Cremolini, Eliana Rulli, Emanuele Canestrari, Niccola Funel, Gaia Schiavon, Iacopo Petrini, Mauro Magnani, Giuseppe Tonini, Daniela Campani, Irene Floriani, Stefano Cascinu, Alfredo Falcone posted by 1 person jfr
	Chromosomal instability determines taxane response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 21. (26 May 2009), pp. 8671-8676. by Charles Swanton, Barbara Nicke, Marion Schuett, et al.Aron C. Eklund, Charlotte Ng, Qiyuan Li, Thomas Hardcastle, Alvin Lee, Rajat Roy, Philip East, Maik Kschischo, David Endesfelder, Paul Wylie, Se Nyun N. Kim, Jie-Guang G. Chen, Michael Howell, Thomas Ried, Jens K. Habermann, Gert Auer, James D. Brenton, Zoltan Szallasi, Julian Downward posted by 1 person jfr
	Local recurrence after breast-conserving therapy in relation to gene expression patterns in a large series of patients. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 12. (15 June 2009), pp. 4181-4190. by Bas Kreike, Hans Halfwerk, Nicola Armstrong, et al.Peter Bult, John A. Foekens, Sanne C. Veltkamp, Dimitry S. Nuyten, Harry Bartelink, Marc J. van de Vijver posted by 1 person jfr
	Variable slope normalization of reverse phase protein arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1384-1389. by E. Shannon Neeley, Steven M. Kornblau, Kevin R. Coombes, Keith A. Baggerly posted by 2 people guhjy jfr
	Multicenter validation of a 1,550-gene expression profile for identification of tumor tissue of origin. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 15. (20 May 2009), pp. 2503-2508. by Federico A. Monzon, Maureen Lyons-Weiler, Ljubomir J. Buturovic, et al.C. Ted Rigl, W. David Henner, Christin Sciulli, Catherine I. Dumur, Fabiola Medeiros, Glenda G. Anderson posted by 1 person jfr
	Ki67 index, HER2 status, and prognosis of patients with luminal B breast cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 10. (20 May 2009), pp. 736-750. by Maggie C. Cheang, Stephen K. Chia, David Voduc, et al.Dongxia Gao, Samuel Leung, Jacqueline Snider, Mark Watson, Sherri Davies, Philip S. Bernard, Joel S. Parker, Charles M. Perou, Matthew J. Ellis, Torsten O. Nielsen posted by 2 people zufar jfr
	Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 3. (June 2009), pp. 219-237. by Tung T. Nguyen, Richard S. Nowakowski, Ioannis P. Androulakis posted by 1 person jfr
	Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases. [My Copy] BMC bioinformatics, Vol. 10 Suppl 3 (2009) by Sangwoo Kim, Doheon Lee posted by 1 person jfr
	Reliability and reproducibility of a RNA preamplification method for low-density array analysis from formalin-fixed paraffin-embedded breast cancer samples. [My Copy] Diagnostic molecular pathology : the American journal of surgical pathology, part B, Vol. 18, No. 2. (June 2009), pp. 112-118. by Paola Ciotti, Anna Garuti, Alberto Ballestrero, et al.Gabriella Cirmena, Maurizio Chiaramondia, Paola Baccini, Emilia Bellone, Paola Mandich posted by 1 person jfr
	Selection of REFERENCE genes for normalization of qRT-PCR data derived from FFPE breast tumors. [My Copy] Diagnostic molecular pathology : the American journal of surgical pathology, part B, Vol. 18, No. 2. (June 2009), pp. 103-107. by Suzanne Drury, Helen Anderson, Mitch Dowsett posted by 1 person jfr
	Mining subspace clusters from DNA microarray data using large itemset techniques. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 5. (May 2009), pp. 745-768. by Ye-In I. Chang, Jiun-Rung R. Chen, Yueh-Chi C. Tsai posted by 2 people guhjy jfr
	A Regularized Method for Selecting Nested Groups of Relevant Genes from Microarray Data [My Copy] (10 Sep 2008) by Christine De Mol, Sofia Mosci, Magali Traskine, Alessandro Verri posted by 1 person jfr
	Breast Cancer Subtypes and Response to Docetaxel in Node-Positive Breast Cancer: Use of an Immunohistochemical Definition in the BCIRG 001 Trial [My Copy] J Clin Oncol (9 February 2009), JCO.2008.18.1024. by Judith Hugh, John Hanson, Maggie C. Cheang, et al.Torsten O. Nielsen, Charles M. Perou, Charles Dumontet, John Reed, Maryla Krajewska, Isabelle Treilleux, Matthieu Rupin, Emmanuelle Magherini, John Mackey, Miguel Martin, Charles Vogel posted by 1 person jfr
	Combining chromosomal arm status and significantly aberrant genomic locations reveals new cancer subtypes. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 91-104. by Tal Shay, Wanyu L. Lambiv, Anat Reiner-Benaim, Monika E. Hegi, Eytan Domany posted by 1 person jfr
	Genomic Grade Index Is Associated With Response to Chemotherapy in Patients With Breast Cancer [My Copy] J Clin Oncol, Vol. 27, No. 19. (1 July 2009), pp. 3185-3191. by Cornelia Liedtke, Christos Hatzis, William F. Symmans, et al.Christine Desmedt, Benjamin Haibe-Kains, Vicente Valero, Henry Kuerer, Gabriel N. Hortobagyi, Martine Piccart-Gebhart, Christos Sotiriou, Lajos Pusztai posted by 1 person jfr
	Quantitative assessment of tissue biomarkers and construction of a model to predict outcome in breast cancer using multiple imputation. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 29-40. by John W. Emerson, Marisa Dolled-Filhart, Lyndsay Harris, David L. Rimm, David P. Tuck posted by 1 person jfr