patricia's Top Recommendations

These recommendations were last updated about an hour ago.

	Setting up and running molecular dynamics simulations of membrane proteins. [My Copy] Methods (San Diego, Calif.), Vol. 41, No. 4. (April 2007), pp. 475-488. by Christian Kandt, Walter L. Ash, D. Peter Tieleman posted by 6 people arnaucordomi choonpeng xdeupi sobolevnrm LabCompMed baker-group
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted by 21 people victorclaessen saravan Diego_Prada xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm baker-group wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor
	Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 47. (20 November 2007), pp. 18496-18501. by Karunesh Arora, Charles L. Brooks posted by 10 people xdeupi jrperillaj barry allmensch cactus sobolevnrm jlh64 structural_bioinformatics baker-group karunesh
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted by 20 people ahmetbakan csrocha BragilMassoud barry dimka aqeel shuns yongzhao xdeupi choonpeng joergkurtwegner daevans structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed LamBras
	A methyl group at C7 of 11-cis-retinal allows chromophore formation but affects rhodopsin activation. [My Copy] Vision Res (5 October 2006) by Laia Bosch, Arnau Cordomí, Marta Domínguez, et al.Darwin Toledo, Margarita Morillo, Juan J J. Pérez, Rosana Alvarez, Angel R R. de Lera, Pere Garriga posted by 3 people xdeupi arnaucordomi LabCompMed
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted by 14 people saravan ahmetbakan xdeupi ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 baker-group yalexeev
	Observation of Ionic Lock Formation in Molecular Dynamics Simulations of Wild Type 1 and 2 Adrenergic Receptors. [My Copy] Biochemistry (20 April 2009) by Stefano Vanni, Marilisa Neri, Ivano Tavernelli, Ursula Rothlisberger posted by 5 people arnaucordomi McCammon jmccammon agrossfield xdeupi
	Cation-pi interactions in chemistry and biology: a new view of benzene, Phe, Tyr, and Trp. [My Copy] Science, Vol. 271, No. 5246. (12 January 1996), pp. 163-168. by D. A. Dougherty posted by 5 people xdeupi medic0747 superpyrin viktor21614 LabCompMed
	Method To Assess Packing Quality of Transmembrane alpha-Helices in Proteins. 1. Parametrization Using Structural Data. [My Copy] J Chem Inf Model (20 March 2007) by Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov posted by 3 people xdeupi superpyrin LabCompMed
	Solving the membrane protein folding problem [My Copy] Nature, Vol. 438, No. 7068. (30 November 2005), pp. 581-589. by James U. Bowie posted by 6 people thaliana xdeupi Odi LabCompMed sebk viktor21614
	G-protein coupled receptor structure. [My Copy] Biochim Biophys Acta (10 October 2006) by Philip L L. Yeagle, Arlene D D. Albert posted by 6 people xdeupi gcaltabiano merj superpyrin adamsdi LabCompMed
	Development and testing of a general amber force field. [My Copy] J Comput Chem, Vol. 25, No. 9. (15 July 2004), pp. 1157-1174. by J. Wang, R. M. Wolf, J. W. Caldwell, P. A. Kollman, D. A. Case posted by 12 people rdf paddydu nigham lillekatt xdeupi gane5h kazemi megs easybakemuffin LabCompMed AndreaColetta pavanghatty
	A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030. by Kai Ye, Eric-Wubbo M. Lameijer, Margot W. Beukers, Adriaan P. Ijzerman posted by 4 people xdeupi cen4ik cat_worth LabCompMed
	Lipid Solvation Effects Contribute to the Affinity of Gly-xxx-Gly Motif-Mediated Helix-Helix Interactions. [My Copy] Biochemistry, Vol. 45, No. 28. (18 July 2006), pp. 8507-8515. by R. M. Johnson, A. Rath, R. A. Melnyk, C. M. Deber posted by 3 people xdeupi viktor21614 LabCompMed
	Progress in structure prediction of α-helical membrane proteins [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 4. (3 August 2006), pp. 496-504. by S. Fleishman, N. Bental posted by 4 people viktor21614 xdeupi wouterboomsma LabCompMed
	Principal pathway coupling agonist binding to channel gating in nicotinic receptors [My Copy] Nature, Vol. 438, No. 7065. (10 November 2005), pp. 243-247. by Won Y. Lee, Steven M. Sine posted by 5 people barry xdeupi structural_bioinformatics Bioinformatics LabCompMed
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted by 15 people allmensch jrperillaj barry aqeel ruvido cactus sobolevnrm structural_bioinformatics Bioinformatics baker-group jennifermbui higueruelo LamBras jmccammon McCammon
	Wordom: a program for efficient analysis of molecular dynamics simulations [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2625-2627. by Michele Seeber, Marco Cecchini, Francesco Rao, Giovanni Settanni, Amedeo Caflisch posted by 9 people guhjy barry tmmurali choonpeng hmk sobolevnrm structural_bioinformatics baker-group LamBras
	Performance of the general amber force field in modeling aqueous POPC membrane bilayers [My Copy] Journal of Computational Chemistry, Vol. 28, No. 12. (12 April 2007), pp. 2051-2058. by Balázs Jójárt, Tamás A. Martinek posted by 6 people sunnytov dimka xdeupi easybakemuffin viktor21614 LabCompMed
	The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme. [My Copy] Biopolymers, Vol. 68, No. 1. (January 2003), pp. 47-62. by J. H. Lin, A. L. Perryman, J. R. Schames, J. A. McCammon posted by 9 people karinaecomp barry blackbart kazemi sobolevnrm structural_bioinformatics Bioinformatics baker-group LamBras
	Full correlation analysis of conformational protein dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Oliver F. Lange, Helmut Grubmüller posted by 10 people paulymer anuragsethi jeargle Diego_Prada softsimu barry choonpeng sobolevnrm baker-group LamBras
	Effect of Ions on a Dipalmitoyl Phosphatidylcholine Bilayer. A Molecular Dynamics Simulation Study [My Copy] J. Phys. Chem. B (15 January 2008) by A. Cordomi, O. Edholm, J. J. Perez posted by 6 people arnaucordomi robertvacha sobolevnrm baker-group softsimu dimka
	Lipid bilayer structure determined by the simultaneous analysis of neutron and x-ray scattering data [My Copy] Biophys. J. (23 May 2008), biophysj.108.132662. by Norbert Kucerka, John F. Nagle, Jonathan N. Sachs, et al.Scott Feller, Jeremy Pencer, Andrew J. Jackson, John Katsaras posted by 5 people viktor21614 paulschlesinger sobolevnrm baker-group agrossfield
	G-protein-coupled receptor structures were not built in a day [My Copy] Protein Science, Vol. 18, No. 7. (20 May 2009), pp. 1335-1342. by Tracy M. Blois, James U. Bowie posted by 4 people Orengo Group Journal Picks lees arnaucordomi xdeupi
	The 2.6 Angstrom Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist [My Copy] Science (2 October 2008), 1164772. by Veli-Pekka Jaakola, Mark T. Griffith, Michael A. Hanson, et al.Vadim Cherezov, Ellen Y. Chien, Robert J. Lane, Adriaan P. Ijzerman, Raymond C. Stevens posted by 3 people cen4ik LabCompMed xdeupi
	Acyl chain conformations in phospholipid bilayers: a comparative study of docosahexaenoic acid and saturated fatty acids. [My Copy] Chemistry and physics of lipids, Vol. 153, No. 1. (May 2008), pp. 76-80. by S. E. Feller posted by 3 people arnaucordomi sobolevnrm baker-group
	Structure Modeling of All Identified G Protein-Coupled Receptors in the Human Genome. [My Copy] PLoS Comput Biol, Vol. 2, No. 2. (17 February 2006) by Yang Zhang, Mark E E. Devries, Jeffrey Skolnick posted by 5 people xdeupi allanlo jfmuggs superpyrin LabCompMed
	Molecular simulation of multistate peptide dynamics: A comparison between microsecond timescale sampling and multiple shorter trajectories [My Copy] Journal of Computational Chemistry, Vol. 29, No. 11. (August 2008), pp. 1740-1752. by Luca Monticelli, Eric J. Sorin, D. Peter Tieleman, Vijay S. Pande, Giorgio Colombo posted by 4 people bmduggan arnaucordomi sobolevnrm baker-group
	Structural flexibility in proteins: impact of the crystal environment [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 521-528. by Konrad Hinsen posted by 8 people Diego_Prada mijogiffin barry sobolevnrm jlh64 baker-group scienbox McCammon
	Recent advances and applications of site-directed spin labeling. [My Copy] Curr Opin Struct Biol (31 August 2006) by Gail E E. Fanucci, David S S. Cafiso posted by 3 people xdeupi viktor21614 LabCompMed
	Transmembrane proteins in the Protein Data Bank: identification and classification. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2964-2972. by G. E. Tusnády, Z. Dosztányi, I. Simon posted by 6 people kallberg chrn xdeupi LabCompMed sebk viktor21614
	Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 21. (26 May 2009), pp. 8555-8560. by Thomas E. Angel, Mark R. Chance, Krzysztof Palczewski posted by 2 people xdeupi agrossfield
	Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 6. (1 November 2007), pp. 2312-2334. by Jianyin Shao, Stephen W. Tanner, Nephi Thompson, Thomas E. Cheatham posted by 14 people karinaecomp anuragsethi Diego_Prada scampos Structural Biology Group TorVergata oteri barry daevans sobolevnrm structural_bioinformatics baker-group LamBras allmensch GermanErlenkamp
	Conformational toggle switches implicated in basal constitutive and agonist-induced activated states of 5-hydroxytryptamine-4 receptors. [My Copy] Molecular pharmacology, Vol. 75, No. 4. (April 2009), pp. 982-990. by L. P. Pellissier, J. Sallander, M. Campillo, et al.F. Gaven, E. Queffeulou, M. Pillot, A. Dumuis, S. Claeysen, J. Bockaert, L. Pardo posted by 2 people arnaucordomi xdeupi
	Protein flexibility using constraints from molecular dynamics simulations. [My Copy] Phys Biol, Vol. 2, No. 4. (November 2005) by T. Mamonova, B. Hespenheide, R. Straub, M. F. Thorpe, M. Kurnikova posted by 5 people lna xdeupi LabCompMed LamBras higueruelo
	Critical Role for the Second Extracellular Loop in the Binding of Both Orthosteric and Allosteric G Protein-coupled Receptor Ligands [My Copy] J. Biol. Chem., Vol. 282, No. 35. (31 August 2007), pp. 25677-25686. by Vimesh A. Avlani, Karen J. Gregory, Craig J. Morton, Michael W. Parker, Patrick M. Sexton, Arthur Christopoulos posted by 2 people xdeupi LabCompMed
	How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach [My Copy] J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 626-636. by Hugh Nymeyer posted by 7 people agrossfield sobolevnrm baker-group loison barry structural_bioinformatics McCammon
	Characterization of Protein Conformational States by Normal-Mode Frequencies [My Copy] J. Am. Chem. Soc. (23 August 2007) by B. A. Hall, S. L. Kaye, A. Pang, R. Perera, P. C. Biggin posted by 11 people Diego_Prada Scis0000002 ubcg08l barry aqeel choonpeng sobolevnrm structural_bioinformatics Bioinformatics baker-group LamBras
	The MARTINI Coarse-Grained Force Field: Extension to Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 5. (1 May 2008), pp. 819-834. by Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman, Siewert-Jan Marrink posted by 18 people loison arnaucordomi dimka oteri sunrise flbarroso Structural Biology Group TorVergata A_Coletta_Thesis krapnik Molecular dynamics in MSU Marine middledomain sobolevnrm baker-group Ema aqeel DanielParton softsimu
	Nonlinear scaling schemes for Lennard-Jones interactions in free energy calculations [My Copy] The Journal of Chemical Physics, Vol. 127, No. 21. (2007), 214108. by Thomas Steinbrecher, David L. Mobley, David A. Case posted by 5 people sunnytov arnaucordomi sobolevnrm baker-group dmobley
	Molecular mechanism of 7TM receptor activation--a global toggle switch model. [My Copy] Annu Rev Pharmacol Toxicol, Vol. 46 (2006), pp. 481-519. by T. W. Schwartz, T. M. Frimurer, B. Holst, M. M. Rosenkilde, C. E. Elling posted by 3 people xdeupi superpyrin LabCompMed
	Structure of a β1-adrenergic G-protein-coupled receptor [My Copy] Nature (25 June 2008) by Tony Warne, Maria J. Serrano-Vega, Jillian G. Baker, et al.Rouslan Moukhametzianov, Patricia C. Edwards, Richard Henderson, Andrew G. W. Leslie, Christopher G. Tate, Gebhard F. X. Schertler posted by 5 people LabCompMed xdeupi merj TonyIvetac McCammon
	Hot-Spots-Guided Receptor-Based Pharmacophores (HS-Pharm): A Knowledge-Based Approach to Identify Ligand-Anchoring Atoms in Protein Cavities and Prioritize Structure-Based Pharmacophores [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 7. (1 July 2008), pp. 1396-1410. by Caterina Barillari, Gilles Marcou, Didier Rognan posted by 4 people xdeupi tbinbal superpyrin higueruelo
	A monomeric G protein-coupled receptor isolated in a high-density lipoprotein particle efficiently activates its G protein [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 18. (1 May 2007), pp. 7682-7687. by Matthew R. Whorton, Michael P. Bokoch, SÃ¸ren G. F. Rasmussen, et al.Bo Huang, Richard N. Zare, Brian Kobilka, Roger K. Sunahara posted by 4 people diod stacyfang xdeupi LabCompMed
	Dosage-dependent switch from G protein-coupled to G protein-independent signaling by a GPCR. [My Copy] The EMBO journal, Vol. 26, No. 1. (10 January 2007), pp. 53-64. by Yutong Sun, Jianyun Huang, Yang Xiang, et al.Murat Bastepe, Harald Jüppner, Brian K. Kobilka, Jillian J. Zhang, Xin-Yun Y. Huang posted by 4 people diod xdeupi Guff32 LabCompMed
	Efficient Coupling of Transducin to Monomeric Rhodopsin in a Phospholipid Bilayer [My Copy] J. Biol. Chem., Vol. 283, No. 7. (15 February 2008), pp. 4387-4394. by Matthew R. Whorton, Beata Jastrzebska, Paul S. H. Park, et al.Dimitrios Fotiadis, Andreas Engel, Krzysztof Palczewski, Roger K. Sunahara posted by 4 people diod xdeupi LabCompMed gcaltabiano
	Structure-function of alpha1-adrenergic receptors. [My Copy] Biochemical pharmacology, Vol. 73, No. 8. (15 April 2007), pp. 1051-1062. by Dianne M. Perez posted by 3 people diod xdeupi LabCompMed
	From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria. [My Copy] Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61. by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer posted by 2 people xdeupi LabCompMed
	Common structural requirements for heptahelical domain function in class A and class C GPCRS. [My Copy] J Biol Chem (19 February 2007) by Virginie Binet, Béatrice Duthey, Jennifer Lecaillon, et al.Claire Vol, Julie Quoyer, Gilles Labesse, Jean-Philippe P. Pin, Laurent Prézeau posted by 2 people xdeupi LabCompMed
	Crystal packing analysis of Rhodopsin crystals. [My Copy] J Struct Biol (9 February 2007) by David T T. Lodowski, David Salom, Isolde Le Trong, et al.David C C. Teller, Juan A A. Ballesteros, Krzysztof Palczewski, Ronald E E. Stenkamp posted by 2 people xdeupi LabCompMed
	Improvements in G protein-coupled receptor purification yield light stable rhodopsin crystals. [My Copy] J Struct Biol (2 June 2006) by David Salom, Isolde Le Trong, Ehmke Pohl, et al.Juan A A. Ballesteros, Ronald E E. Stenkamp, Krzysztof Palczewski, David T T. Lodowski posted by 2 people xdeupi LabCompMed
	Modeling activated states of GPCRs: the rhodopsin template. [My Copy] J Comput Aided Mol Des, Vol. 20, No. 7-8. (g 2006), pp. 437-448. by M. Y. Niv, L. Skrabanek, M. Filizola, H. Weinstein posted by 3 people xdeupi LabCompMed IrinaMoreira
	Inactive and active states and supramolecular organization of GPCRs: insights from computational modeling. [My Copy] J Comput Aided Mol Des, Vol. 20, No. 7-8. (g 2006), pp. 449-461. by F. Fanelli, P. G. De Benedetti posted by 2 people xdeupi LabCompMed
	Mapping allosteric connections from the receptor to the nucleotide-binding pocket of heterotrimeric G proteins. [My Copy] Proc Natl Acad Sci U S A (26 April 2007) by William M M. Oldham, Ned Van Eps, Anita M M. Preininger, Wayne L L. Hubbell, Heidi E E. Hamm posted by 4 people xdeupi laurabailey choonpeng LabCompMed
	How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations. [My Copy] Proteins, Vol. 66, No. 3. (15 February 2007), pp. 559-574. by P. S. Crozier, M. J. Stevens, T. B. Woolf posted by 2 people xdeupi LabCompMed
	High-Resolution Crystal Structure of an Engineered Human 2-Adrenergic G Protein Coupled Receptor [My Copy] Science, Vol. 318, No. 5854. (23 November 2007), pp. 1258-1265. by Vadim Cherezov, Daniel M. Rosenbaum, Michael A. Hanson, et al.Soren G. F. Rasmussen, Foon S. Thian, Tong S. Kobilka, Hee-Jung Choi, Peter Kuhn, William I. Weis, Brian K. Kobilka, Raymond C. Stevens posted by 13 people anna_yershova artkoch cafeandaman jwm Fritz gcaltabiano merj sobolevnrm neurolit LabCompMed baker-group davidlott rph
	Transmembrane signaling by G protein-coupled receptors. [My Copy] Methods Mol Biol, Vol. 332 (2006), pp. 3-49. by L. M. Luttrell posted by 5 people xdeupi dchughes G4ID LabCompMed Genetics-of-Gambling
	Atomic-level characterization of disordered protein ensembles [My Copy] Current Opinion in Structural Biology In Folding and binding / Protein-nucleic interactions, Vol. 17, No. 1. (February 2007), pp. 3-14. by Tanja Mittag, Julie D. Forman-Kay posted by 8 people yxue flbarroso apaydin xdeupi cactus LabCompMed biehl allmensch
	Two-dimensional solid-state NMR applied to a chimeric potassium channel. [My Copy] J Recept Signal Transduct Res, Vol. 26, No. 5-6. (2006), pp. 379-393. by A. Lange, K. Giller, O. Pongs, S. Becker, M. Baldus posted by 2 people xdeupi LabCompMed
	International Union of Basic and Clinical Pharmacology. LXVII. Recommendations for the Recognition and Nomenclature of G Protein-Coupled Receptor Heteromultimers. [My Copy] Pharmacol Rev, Vol. 59, No. 1. (March 2007), pp. 5-13. by J. P. Pin, R. Neubig, M. Bouvier, et al.L. Devi, M. Filizola, J. A. Javitch, M. J. Lohse, G. Milligan, K. Palczewski, M. Parmentier, M. Spedding posted by 2 people xdeupi LabCompMed
	Recent advances in identification and characterization of beta-adrenoceptor agonists and antagonists. [My Copy] Curr Top Med Chem, Vol. 7, No. 2. (2007), pp. 207-216. by J. P. Hieble posted by 2 people xdeupi LabCompMed
	Combining Elastic Network Analysis and Molecular Dynamics Simulations by Hamiltonian Replica Exchange [My Copy] J. Chem. Theory Comput., Vol. 4, No. 3. (11 March 2008), pp. 477-487. by M. Zacharias posted by 3 people barry sobolevnrm baker-group
	A fluorescent probe designed for studying protein conformational change. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 965-970. by B. E. Cohen, A. Pralle, X. Yao, et al.G. Swaminath, C. S. Gandhi, Y. N. Jan, B. K. Kobilka, E. Y. Isacoff, L. Y. Jan posted by 5 people xdeupi samjlord yanjiang LabCompMed moernerlab
	Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. [My Copy] J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 921-936. by A. Senes, M. Gerstein, D. M. Engelman posted by 3 people nedwards xdeupi LabCompMed
	Smart drug discovery leveraging innovative technologies and predictive knowledge. [My Copy] Nat Chem Biol, Vol. 2, No. 12. (December 2006), pp. 646-648. by T. K. Sawyer posted by 2 people xdeupi LabCompMed
	The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 959-963. by S. Yohannan, S. Faham, D. Yang, J. P. Whitelegge, J. U. Bowie posted by 3 people thaliana xdeupi LabCompMed
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted by 10 people martainn yuslinaz barry marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	Molecular dynamics simulation of a phosphatidylglycerol membrane. [My Copy] FEBS Lett (6 December 2005) by Donald E E. Elmore posted by 8 people dimka piscinero xdeupi Fluid-Mechanics-and-Thermal-Science-Research Computational_Systems_Biology XMLDataManagement LabCompMed softsimu
	Structure and conformational changes in the C-terminal domain of the beta 2-adrenoceptor: Insights from fluorescence resonance energy tranfer studies. [My Copy] J Biol Chem (8 March 2007) by Sebastien Granier, Samuel Kim, Aaron M M. Shafer, et al.Venkata R P R. Ratnala, Juan J J. Fung, Richard N N. Zare, Brian K K. Kobilka posted by 2 people xdeupi LabCompMed
	Role of cholesterol in the function and organization of G-protein coupled receptors. [My Copy] Prog Lipid Res, Vol. 45, No. 4. (July 2006), pp. 295-333. by T. J. Pucadyil, A. Chattopadhyay posted by 4 people xdeupi LabCompMed wsjames Oxford Virology
	Conformational selection or induced fit: A flux description of reaction mechanism [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 33. (18 August 2009), pp. 13737-13741. by Gordon G. Hammes, Yu-Chu Chang, Terrence G. Oas posted by 7 people okapi chemrahul82 xdeupi anuragsethi pmung McCammon barry
	Physiological relevance of GPCR oligomerization and its impact on drug discovery. [My Copy] Drug discovery today, Vol. 13, No. 23-24. (14 December 2008), pp. 1059-1066. by Rosemarie Panetta, Michael T. Greenwood posted by 2 people guhjy xdeupi
	Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1650-1660. by Martin B. Ulmschneider, Mark S. Sansom, Alfredo Di Nola posted by 4 people thaliana xdeupi loison LabCompMed
	Metal Ion Site Engineering Indicates a Global Toggle Switch Model for Seven-transmembrane Receptor Activation. [My Copy] J Biol Chem, Vol. 281, No. 25. (23 June 2006), pp. 17337-17346. by C. E. Elling, T. M. Frimurer, L. O. Gerlach, R. Jorgensen, B. Holst, T. W. Schwartz posted by 3 people xdeupi LabCompMed IrinaMoreira
	G proteins in drug screening: from analysis of receptor-G protein specificity to manipulation of GPCR-mediated signalling pathways. [My Copy] Curr Pharm Des, Vol. 12, No. 14. (2006), pp. 1703-1715. by E. Kostenis posted by 2 people xdeupi LabCompMed
	GPCR agonists and antagonists in the clinic. [My Copy] Med Chem, Vol. 1, No. 4. (July 2005), pp. 405-421. by J. D. Tyndall, R. Sandilya posted by 2 people xdeupi LabCompMed
	Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures [My Copy] FEBS Journal, Vol. 0, No. 0. (23 November 2007), pp. 071127150548002-???. by Alexander Wlodawer,, Wladek Minor,, Zbigniew Dauter,, Mariusz Jaskolski, posted by 12 people Gabriel439 skywalkerus02 klexa nanonan structural_bioinformatics McCammon barry baker-group sobolevnrm ae1054 aisyahrehan rph
	ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006) by E. Granseth, H. Viklund, A. Elofsson posted by 4 people thaliana chrn xdeupi LabCompMed
	The three-dimensional structure of the N-terminal domain of corticotropin-releasing factor receptors: sushi domains and the B1 family of G protein-coupled receptors. [My Copy] Ann N Y Acad Sci, Vol. 1070 (July 2006), pp. 105-119. by M. H. Perrin, C. R. Grace, R. Riek, W. W. Vale posted by 2 people xdeupi LabCompMed
	Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry. [My Copy] Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1303-1317. by R. B. Jacobsen, K. L. Sale, M. J. Ayson, et al.P. Novak, J. Hong, P. Lane, N. L. Wood, G. H. Kruppa, M. M. Young, J. S. Schoeniger posted by 2 people xdeupi LabCompMed
	Bridging conformational dynamics and function using single-molecule spectroscopy. [My Copy] Structure, Vol. 14, No. 4. (April 2006), pp. 633-643. by S. Myong, B. C. Stevens, T. Ha posted by 2 people xdeupi LabCompMed
	PDZ-domain arrays for identifying components of GPCR signaling complexes. [My Copy] Trends Pharmacol Sci (8 August 2006) by Peter Day, Brian Kobilka posted by 2 people xdeupi LabCompMed
	Novel mutants of the human beta1-adrenergic receptor reveal amino acids relevant for receptor activation. [My Copy] J Biol Chem, Vol. 281, No. 26. (30 June 2006), pp. 18120-18125. by B. Behr, C. Hoffmann, G. Ottolina, K. N. Klotz posted by 2 people xdeupi LabCompMed
	Asymmetric stability among the transmembrane helices of lactose permease. [My Copy] Biochemistry, Vol. 45, No. 26. (4 July 2006), pp. 8088-8095. by M. Bennett, R. D'Rozario, M. S. Sansom, P. L. Yeagle posted by 2 people xdeupi LabCompMed
	A polymorphism within a conserved beta(1)-adrenergic receptor motif alters cardiac function and beta-blocker response in human heart failure. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 30. (25 July 2006), pp. 11288-11293. by S. B. Liggett, J. Mialet-Perez, S. Thaneemit-Chen, et al.S. A. Weber, S. M. Greene, D. Hodne, B. Nelson, J. Morrison, M. J. Domanski, L. E. Wagoner, W. T. Abraham, J. L. Anderson, J. F. Carlquist, H. J. Krause-Steinrauf, L. C. Lazzeroni, J. D. Port, P. W. Lavori, M. R. Bristow posted by 2 people xdeupi LabCompMed
	Short-range Molecular Rearrangements in Ion Channels Detected by Tryptophan Quenching of Bimane Fluorescence. [My Copy] J Gen Physiol, Vol. 128, No. 3. (September 2006), pp. 337-346. by L. D. Islas, W. N. Zagotta posted by 2 people xdeupi LabCompMed
	Analysis of the residue-residue coevolution network and the functionally important residues in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Byung-Chul Lee, Keunwan Park, Dongsup Kim posted by 10 people barry neils sobolevnrm structural_bioinformatics baker-group mingzhi penpen926 scienbox wilbur friendpine
	How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins? [My Copy] Biopolymers (12 July 2006) by Yungki Park, Volkhard Helms posted by 3 people thaliana xdeupi LabCompMed
	Molecular dynamics simulations of bovine rhodopsin: influence of protonation states and different membrane-mimicking environments. [My Copy] J Mol Model (Online) (25 October 2005), pp. 1-16. by Birgit Schlegel, Wolfgang Sippl, Hans-Dieter D. Höltje posted by 3 people xdeupi LabCompMed saravan
	Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer. [My Copy] J Comput Aided Mol Des (7 November 2006) by Marta Filizola, Simon X. Wang, Harel Weinstein posted by 2 people xdeupi LabCompMed
	Dynamic helix interactions in transmembrane signaling. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 447-450. by E. E. Matthews, M. Zoonens, D. M. Engelman posted by 4 people xdeupi gcaltabiano ndoelker LabCompMed
	Emerging roles for lipids in shaping membrane-protein function [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 379-385. by Rob Phillips, Tristan Ursell, Paul Wiggins, Pierre Sens posted by 11 people hchuang chiufanlee girayenkavi viktor21614 agrossfield cjryan kevinchannon hsekiguc baker-group sobolevnrm nelfarargy
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 53 people loison ubcg08l trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	The membrane protein universe: what's out there and why bother? [My Copy] Journal of Internal Medicine, Vol. 261, No. 6. (June 2007), pp. 543-557. by Von Heijne, G. posted by 4 people guhjy andreasauerwein xdeupi LabCompMed
	Molecular dynamics simulation of the human adenosine A3 receptor: agonist induced conformational changes of Trp243 [My Copy] Journal of Computer-Aided Molecular Design, Vol. 20, No. 10-11. (October 2006), pp. 673-684. by Hallmen, Christian, Wiese, Michael posted by 2 people xdeupi LabCompMed
	A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 62, No. 2. (1 February 2006), pp. 509-538. by Jean-Sebastien Surgand, Jordi Rodrigo, Esther Kellenberger, Didier Rognan posted by 3 people naweill xdeupi LabCompMed
	G-protein-coupled receptors: past, present and future. [My Copy] Br J Pharmacol, Vol. 147 Suppl 1 (January 2006) by S. J. Hill posted by 6 people xdeupi allanlo Fritz merj neurolit LabCompMed
	The identification of ligands at orphan G-protein coupled receptors. [My Copy] Annu Rev Pharmacol Toxicol, Vol. 44 (2004), pp. 43-66. by A. Wise, S. C. Jupe, S. Rees posted by 2 people xdeupi LabCompMed
	Crystal structure of the ligand-free G-protein-coupled receptor opsin [My Copy] Nature, Vol. 454, No. 7201. (10 July 2008), pp. 183-187. by Jung H. Park, Patrick Scheerer, Klaus P. Hofmann, Hui-Woog Choe, Oliver P. Ernst posted by 3 people xdeupi reyez mrasch
	Direct measurement of protein binding energetics by isothermal titration calorimetry [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 5. (1 September 2001), pp. 560-566. by Stephanie Leavitt, Ernesto Freire posted by 4 people baker-group sobolevnrm barry cactus