John Pinney's Top Recommendations

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	Quantifying environmental adaptation of metabolic pathways in metagenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1374-1379. by Tara A. Gianoulis, Jeroen Raes, Prianka V. Patel, et al.Robert Bjornson, Jan O. Korbel, Ivica Letunic, Takuji Yamada, Alberto Paccanaro, Lars J. Jensen, Michael Snyder, Peer Bork, Mark B. Gerstein posted by 19 people Paccanaro Lab paccanarolab vvoorr djkt jjray roys sharpton Lizzy_fun skembel iSEEM jlgreen Thaverkamp dbensasson anphony michaelbarton idoerg trfield larsjuhljensen jmeppley
	Network Analysis in the Social Sciences [My Copy] Science, Vol. 323, No. 5916. (13 February 2009), pp. 892-895. by Stephen P. Borgatti, Ajay Mehra, Daniel J. Brass, Giuseppe Labianca posted by 32 people colmryan orzenil rrbarb vachicba rsantana jaspervoskuilen quintosol rcrane rdiaz aalves eegilbert paulovn ddahlem acrmartins donpellegrino Kovanen phreeza BCDC Lab Notebook Zephyrus sebastien_vigneau stringertheory zhangyangli ACED study group on social networks matthijs pkonings pick600 mstumpf jago trfield kshundyak Med Anthro @ UF cgravlee
	Towards accurate imputation of quantitative genetic interactions [My Copy] Genome Biology, Vol. 10, No. 12. (2009), R140. by Igor Ulitsky, Nevan Krogan, Ron Shamir posted by 4 people sgusev venancio pedrobeltrao daforerog
	Experimental evolution of bet hedging [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 90-93. by Hubertus J. E. Beaumont, Jenna Gallie, Christian Kost, Gayle C. Ferguson, Paul B. Rainey posted by 10 people venancio pmalkus tomhebbron dbikard yyfwuhan Winzer pkm megraw pedrobeltrao jjray
	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins [My Copy] PLoS Biol, Vol. 7, No. 10. (20 October 2009), e1000218. by Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, et al.David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone posted by 5 people kiekyon phoenixzxl venancio pedrobeltrao cabbagesofdoom
	Systems biology: Untangling the protein web [My Copy] Nature, Vol. 460, No. 7253. (15 July 2009), pp. 415-418. by Nathan Blow posted by 16 people Orengo Group Journal Picks robertrentzsch pekrau apocapoc psique leemond31 colmryan reyez carlk guhjy saket tmmurali dswan dullhunk renatomilani agonzale
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted by 18 people claire_jubin n00c idoerg ajsferreira pst owenlancaster Orengo Group Journal Picks robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor venancio desany
	EXTINCTIONS IN HETEROGENEOUS ENVIRONMENTS AND THE EVOLUTION OF MODULARITY [My Copy] Evolution, Vol. 63, No. 8. (2009), pp. 1964-1975. by Nadav Kashtan, Merav Parter, Erez Dekel, Avi E. Mayo, Uri Alon posted by 1 person vvoorr
	Spontaneous Evolution of Modularity and Network Motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon, Jr posted by 1 person vvoorr
	Evolutionary constraints permeate large metabolic networks [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 231. by Andreas Wagner posted by 3 people vvoorr apocapoc idoerg
	Early-warning signals for critical transitions [My Copy] Nature, Vol. 461, No. 7260. (03 September 2009), pp. 53-59. by Marten Scheffer, Jordi Bascompte, William A. Brock, et al.Victor Brovkin, Stephen R. Carpenter, Vasilis Dakos, Hermann Held, Egbert H. van Nes, Max Rietkerk, George Sugihara posted by 20 people timflutre yyfwuhan nurban pablocarb kumar_physics vvoorr MurphysLab bertelsen diamantis yse danilov jjray apocapoc kinestetika cermak ahuesler gi0rgi0ne bayesian pem cjryan
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted by 12 people yyfwuhan cmzmasek dgront robfsouza pansapiens pablocarb vvoorr biomcgary dayjm jwm Marcotte_Lab jbhiatt
	Genome Evolution at the Genus Level: Comparison of Three Complete Genomes of Hyperthermophilic Archaea [My Copy] Genome Research, Vol. 11, No. 6. (1 June 2001), pp. 981-993. by Odile Lecompte, Raymond Ripp, Valérie Puzos-Barbe, et al.Simone Duprat, Roland Heilig, Jacques Dietrich, Jean-Claude Thierry, Olivier Poch posted by 1 person vvoorr
	Complex Systems: From chemistry to systems biology [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6433-6434. by John Ross, Adam P. Arkin posted by 6 people lwrobinson guhjy mbeeby vvoorr jjray kshundyak
	Phenotypes and tolerances in the design space of biochemical systems [My Copy] Proceedings of the National Academy of Sciences (11 March 2009) by Michael A. Savageau, Pedro M. Coelho, Rick A. Fasani, Dean A. Tolla, Armindo Salvador posted by 4 people vvoorr baker-group sobolevnrm jjray
	Darwinian evolution in the light of genomics [My Copy] Nucl. Acids Res., Vol. 37, No. 4. (1 March 2009), pp. 1011-1034. by Eugene V. Koonin posted by 26 people jasontsai vvoorr Journal picks qayub michaelbarton polivares pawelsobko Zephyrus gwallau LabDros dayjm nurban natstreet druvus biomcgary mlog tomhebbron haloin VGreiff lizbiogen inquil lp2 gjuggler guhjy sebastien_vigneau sjcockell
	MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19678-19683. by Baltazar D. Aguda, Yangjin Kim, Melissa G. Piper-Hunter, Avner Friedman, Clay B. Marsh posted by 6 people jfr microRNA heliopais pengchy myzhang vvoorr
	Bacterial diversity within the human subgingival crevice [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 25. (7 December 1999), pp. 14547-14552. by Ian Kroes, Paul W. Lepp, David A. Relman posted by 1 person vvoorr
	Network model of survival signaling in large granular lymphocyte leukemia [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 42. (21 October 2008), pp. 16308-16313. by Ranran Zhang, Mithun V. Shah, Jun Yang, et al.Susan B. Nyland, Xin Liu, Jong K. Yun, Réka Albert, Thomas P. Loughran posted by 2 people vvoorr akraemer
	Deletional bias and the evolution of bacterial genomes [My Copy] Trends in Genetics, Vol. 17, No. 10. (01 October 2001), pp. 589-596. by A. Mira posted by 1 person vvoorr
	The Hill equation revisited: uses and misuses [My Copy] FASEB J., Vol. 11, No. 11. (1 September 1997), pp. 835-841. by J. N. Weiss posted by 4 people vvoorr Supramolecular jmrivort jporternj
	Environmental variability and modularity of bacterial metabolic networks [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (23 September 2007), 169. by Merav Parter, Nadav Kashtan, Uri Alon posted by 1 person vvoorr
	The evolution of gene regulation by transcription factors and microRNAs [My Copy] Nature Reviews Genetics, Vol. 8, No. 2. (01 February 2007), pp. 93-103. by Kevin Chen, Nikolaus Rajewsky posted by 29 people heliopais guhjy antonkratz qfwills vvoorr aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 EisenLab microRNA Nie GIG dandaman maralena bootsy robertkofler
	MicroRNAs: small RNAs with a big role in gene regulation [My Copy] Nature Reviews Genetics, Vol. 5, No. 7. (01 July 2004), pp. 522-531. by Lin He, Gregory J. Hannon posted by 10 people microRNA heliopais GeeSharpMinor fishtank vvoorr guhjy jfr dchughes ealloza cerami
	MicroRNA biogenesis: coordinated cropping and dicing [My Copy] Nature Reviews Molecular Cell Biology, Vol. 6, No. 5. (01 May 2005), pp. 376-385. by V. Narry Kim posted by 6 people microRNA heliopais vvoorr dchughes cdawson GIG
	Metagenomic Analysis of the Human Distal Gut Microbiome [My Copy] Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359. by Steven R. Gill, Mihai Pop, Robert T. DeBoy, et al.Paul B. Eckburg, Peter J. Turnbaugh, Buck S. Samuel, Jeffrey I. Gordon, David A. Relman, Claire M. Fraser-Liggett, Karen E. Nelson posted by 32 people cmzmasek Thaverkamp jbhiatt windman83 Zephyrus vvoorr skembel Yanno ana dayjm jmeppley dchughes cmm neveaire hcmorton michC bluto azazello beatrizfernandez wenhan xingxu structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling host-bacteria melissa_wos
	Oncomirs - microRNAs with a role in cancer. [My Copy] Nature reviews. Cancer, Vol. 6, No. 4. (April 2006), pp. 259-269. by Aurora Esquela-Kerscher, Frank J. Slack posted by 21 people shazo songpku giovenko fishtank myzhang abhattac vvoorr guhjy marcius eckart_bindewald xico dchughes cdawson ealloza WetBiology G4ID BioinfoCIPF SGU-CIPF GIG Genetics-of-Gambling jfr
	Digital genetics: unravelling the genetic basis of evolution [My Copy] Nat Rev Genet, Vol. 7, No. 2. (01 February 2006), pp. 109-118. by Christoph Adami posted by 7 people vvoorr emilyhare timflutre seahawk27 EisenLab dlobo GEB
	Global organization of metabolic fluxes in the bacterium Escherichia coli. [My Copy] Nature, Vol. 427, No. 6977. (26 February 2004), pp. 839-843. by E. Almaas, B. Kovács, T. Vicsek, Z. N. Oltvai, A-L L. Barabási posted by 7 people vvoorr jeicher alexg JeremyZucker gcalda MetabolicModeling michaelbarton
	Diversity of the Human Intestinal Microbial Flora [My Copy] Science, Vol. 308, No. 5728. (10 June 2005), pp. 1635-1638. by Paul B. Eckburg, Elisabeth M. Bik, Charles N. Bernstein, et al.Elizabeth Purdom, Les Dethlefsen, Michael Sargent, Steven R. Gill, Karen E. Nelson, David A. Relman posted by 9 people dutilh cmzmasek yairgoldfeder vvoorr tmmurali dayjm jmeppley wenhan melissa_wos
	Drosophila Embryos as Model Systems for Monitoring Bacterial Infection in Real Time [My Copy] PLoS Pathog, Vol. 5, No. 7. (17 July 2009), e1000518. by Isabella Vlisidou, Andrea J. Dowling, Iwan R. Evans, Nicholas Waterfield, Richard H. Ffrench-Constant, Will Wood posted by 2 people iml trfield
	Role of Mutation in <italic>Pseudomonas aeruginosa</italic> Biofilm Development [My Copy] PLoS ONE, Vol. 4, No. 7. (16 July 2009), e6289. by Tim C. R. Conibear, Samuel L. Collins, Jeremy S. Webb posted by 1 person trfield
	Adult Vaccination Strategies for the Control of Pertussis in the United States: An Economic Evaluation Including the Dynamic Population Effects [My Copy] PLoS ONE, Vol. 4, No. 7. (16 July 2009), e6284. by Laurent Coudeville, Annelies Van Rie, Denis Getsios, Jaime J. Caro, Pascal Crépey, Van H. Nguyen posted by 2 people pascalcrepey trfield
	Functional tradeoffs determine species coexistence via the storage effect [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11641-11645. by Amy L. Angert, Travis E. Huxman, Peter Chesson, D. Lawrence Venable posted by 1 person trfield
	Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. [My Copy] PloS one, Vol. 4, No. 7. (15 July 2009), e6072. by M. T. Holden, H. Hauser, M. Sanders, et al.T. H. Ngo, I. Cherevach, A. Cronin, I. Goodhead, K. Mungall, M. A. Quail, C. Price, E. Rabbinowitsch, S. Sharp, N. J. Croucher, T. B. Chieu, N. T. Mai, T. S. Diep, N. T. Chinh, M. Kehoe, J. A. Leigh, P. N. Ward, C. G. Dowson, A. M. Whatmore, N. Chanter, P. Iversen, M. Gottschalk, J. D. Slater, H. E. Smith, B. G. Spratt, J. Xu, C. Ye, S. Bentley, B. G. Barrell, C. Schultsz, D. J. Maskell, J. Parkhill posted by 2 people Journal picks trfield
	ProteinArchitect: Protein Evolution above the Sequence Level [My Copy] PLoS ONE, Vol. 4, No. 7. (15 July 2009), e6176. by Matthias Haimel, Karin Pröll, Michael Rebhan posted by 4 people gjuggler zwang sjcockell trfield
	Modeling of the Bacterial Mechanism of Methicillin-Resistance by a Systems Biology Approach [My Copy] PLoS ONE, Vol. 4, No. 7. (13 July 2009), e6226. by Ida Autiero, Susan Costantini, Giovanni Colonna posted by 3 people sjcockell trfield adampah
	Assessing the relevance of node features for network structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11433-11438. by Ginestra Bianconi, Paolo Pin, Matteo Marsili posted by 15 people Soslab halukbingol rdiaz daforerog Kovanen zwang apocapoc Diego_Prada winterstream trfield deanmalmgren tomt21 roys tmmurali statnet
	The Effect of Ongoing Exposure Dynamics in Dose Response Relationships [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (5 June 2009), e1000399. by Josep M. Pujol, Joseph E. Eisenberg, Charles N. Haas, James S. Koopman posted by 1 person trfield
	Functional States of the genome-scale Escherichia coli transcriptional regulatory system. [My Copy] PLoS computational biology, Vol. 5, No. 6. (5 June 2009), e1000403. by Erwin P. Gianchandani, Andrew R. Joyce, Bernhard Ø. Palsson, Jason A. Papin posted by 4 people schwartzjmc roys TRHvidsten trfield
	<italic>Caenorhabditis elegans</italic> Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits [My Copy] PLoS Genet, Vol. 5, No. 6. (5 June 2009), e1000503. by Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, Michael A. Herman posted by 3 people iSEEM djkt trfield
	A Statistical Framework for the Adaptive Management of Epidemiological Interventions [My Copy] PLoS ONE, Vol. 4, No. 6. (5 June 2009), e5807. by Daniel Merl, Leah R. Johnson, Robert B. Gramacy, Marc Mangel posted by 1 person trfield
	Using Biotic Interaction Networks for Prediction in Biodiversity and Emerging Diseases [My Copy] PLoS ONE, Vol. 4, No. 5. (28 May 2009), e5725. by Christopher R. Stephens, Joaquín G. Heau, Camila González, Carlos N. Ibarra-Cerdeña, Victor Sánchez-Cordero, Constantino González-Salazar posted by 1 person trfield
	Genetic Architecture of Intrinsic Antibiotic Susceptibility [My Copy] PLoS ONE, Vol. 4, No. 5. (20 May 2009), e5629. by Hany S. Girgis, Alison K. Hottes, Saeed Tavazoie posted by 2 people timothee-poisot trfield
	Drug efflux pump deficiency and drug target resistance masking in growing bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8215-8220. by David Fange, Karin Nilsson, Tanel Tenson, Måns Ehrenberg posted by 1 person trfield
	Inactivation of expression of several genes in a variety of bacterial species by EGS technology [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8163-8168. by Ning Shen, Jae-Hyeong Ko, Gaoping Xiao, et al.Donna Wesolowski, Ge Shan, Bruce Geller, Mina Izadjoo, Sidney Altman posted by 1 person trfield
	Analysis of Functional Genomic Signals Using the XOR Gate [My Copy] PLoS ONE, Vol. 4, No. 5. (19 May 2009), e5608. by Mahesh Yaragatti, Qi Wen posted by 1 person trfield
	Codon Size Reduction as the Origin of the Triplet Genetic Code [My Copy] PLoS ONE, Vol. 4, No. 5. (27 May 2009), e5708. by Pavel V. Baranov, Maxime Venin, Gregory Provan posted by 1 person trfield
	Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 9063-9068. by Patrick H. Degnan, Yeisoo Yu, Nicholas Sisneros, Rod A. Wing, Nancy A. Moran posted by 2 people kmachemer trfield
	Hypergraphs and Cellular Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000385. by Steffen Klamt, Utz-Uwe Haus, Fabian Theis posted by 12 people rdiaz ptrobajo poirel apocapoc trfield uuh danmaclean fgibson dswan tmmurali Borelli shikin
	What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000348. by Mark D. McDonnell, Derek Abbott posted by 18 people marekrud nurban josepe Sergey_gerbek iml bertelsen sylvain_chevallier fccoelho thegoose Gorzomagnificent reyez bayesian trfield flips kentsis fgibson jjray GeeSharpMinor
	A Big World Inside Small-World Networks [My Copy] PLoS ONE, Vol. 4, No. 5. (25 May 2009), e5686. by Zhihua Zhang, Jianzhi Zhang posted by 3 people tnhh trfield deanmalmgren
	Computational Models of the Notch Network Elucidate Mechanisms of Context-dependent Signaling [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000390. by Smita Agrawal, Colin Archer, David V. Schaffer posted by 3 people trfield cassj agonzale
	Evolutionary selection between alternative modes of gene regulation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8841-8846. by Ulrich Gerland, Terence Hwa posted by 5 people yyfwuhan trfield bpcusack jjray kshundyak
	A coordinated network of transporters with overlapping specificities provides a robust survival strategy [My Copy] Proceedings of the National Academy of Sciences (18 May 2009) by Nir Tal, Shimon Schuldiner posted by 3 people viktor21614 trfield jjray
	The effect of network topology on the stability of discrete state models of genetic control [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8209-8214. by Andrew Pomerance, Edward Ott, Michelle Girvan, Wolfgang Losert posted by 6 people rdiaz megraw trfield schwartzjmc TRHvidsten deanmalmgren
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted by 28 people idonaldson heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Bioinformatics - CRUK Stew farhat humburg kshameer operon Mycology stajich GeeSharpMinor Journal picks AlexBateman Bioinformatics barry
	<italic>Pseudomonas aeruginosa</italic> PAO1 Preferentially Grows as Aggregates in Liquid Batch Cultures and Disperses upon Starvation [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5513. by David Schleheck, Nicolas Barraud, Janosch Klebensberger, et al.Jeremy S. Webb, Diane Mcdougald, Scott A. Rice, Staffan Kjelleberg posted by 1 person trfield
	Network Analysis of Differential Expression for the Identification of Disease-Causing Genes [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5526. by Daniela Nitsch, Léon-Charles Tranchevent, Bernard Thienpont, et al.Lieven Thorrez, Hilde Van Esch, Koenraad Devriendt, Yves Moreau posted by 4 people rdiaz yaredo lthorrez trfield
	Spatial dynamics of ecological public goods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7910-7914. by Joe Y. Wakano, Martin A. Nowak, Christoph Hauert posted by 6 people Soslab halukbingol jagarciag qwermish deanmalmgren trfield
	Host–pathogen time series data in wildlife support a transmission function between density and frequency dependence [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7905-7909. by Matthew J. Smith, Sandra Telfer, Eva R. Kallio, et al.Sarah Burthe, Alex R. Cook, Xavier Lambin, Michael Begon posted by 1 person trfield
	Synergy between pathogen release and resource availability in plant invasion [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7899-7904. by Dana Blumenthal, Charles E. Mitchell, Petr Pyšek, Vojtěch Jarošík posted by 2 people timothee-poisot trfield
	Genetic reductionist approach for dissecting individual roles of GGDEF proteins within the c-di-GMP signaling network in Salmonella [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7997-8002. by Cristina Solano, Begoña García, Cristina Latasa, et al.Alejandro Toledo-Arana, Violeta Zorraquino, Jaione Valle, Joan Casals, Enrique Pedroso, Iñigo Lasa posted by 2 people fhsantanna trfield
	Filter feeders and plankton increase particle encounter rates through flow regime control [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7882-7887. by Stuart Humphries posted by 2 people trfield katiehumphry
	How β-Lactam Antibiotics Enter Bacteria: A Dialogue with the Porins [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5453. by Chloë E. James, Kozhinjampara R. Mahendran, Alexander Molitor, et al.Jean-Michel Bolla, Andrey N. Bessonov, Mathias Winterhalter, Jean-Marie Pagès posted by 1 person trfield
	Evolutionary Repercussions of Avian Culling on Host Resistance and Influenza Virulence [My Copy] PLoS ONE, Vol. 4, No. 5. (11 May 2009), e5503. by Eunha Shim, Alison P. Galvani posted by 2 people zwang trfield
	A Modeling-Derived Hypothesis on Chronicity in Respiratory Diseases: Desensitized Pathogen Recognition Secondary to Hyperactive IRAK/TRAF6 Signaling [My Copy] PLoS ONE, Vol. 4, No. 4. (24 April 2009), e5332. by Tingting Zhang, Kyung W. Song, Mohammad Hekmat-Nejad, David G. Morris, Brian R. Wong posted by 1 person trfield
	Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways [My Copy] PLoS ONE, Vol. 4, No. 4. (28 April 2009), e5364. by Arthur Brady, Kyle Maxwell, Noah Daniels, Lenore J. Cowen posted by 3 people dakelley trfield deanmalmgren
	Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 42. by C. Li, M. Nagasaki, K. Ueno, S. Miyano posted by 5 people kabookie reyez Doug trfield arne
	Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6447-6452. by Benedict Anchang, Mohammad J. Sadeh, Juby Jacob, et al.Achim Tresch, Marcel O. Vlad, Peter J. Oefner, Rainer Spang posted by 5 people pkm abhishek_tiwari trfield deanmalmgren shikin
	Complexity in bacterial cell–cell communication: Quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay [My Copy] Proceedings of the National Academy of Sciences (20 April 2009) by Ilka B. Bischofs, Joshua A. Hug, Aiwen W. Liu, Denise M. Wolf, Adam P. Arkin posted by 5 people trfield coela kalvala jjray Winzer
	Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 39. by Hossein Zare, Dipen Sangurdekar, Poonam Srivastava, Mostafa Kaveh, Arkady Khodursky posted by 4 people enelkinsan TRHvidsten barriot trfield
	Data-driven normalization strategies for high-throughput quantitative RT-PCR. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (19 April 2009), 110. by Jessica C. Mar, Yasumasa Kimura, Kate Schroder, et al.Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David Hume, John Quackenbush posted by 9 people jfr guhjy Bioinformatics lwaldron renatomilani trfield shikin druvus natstreet
	A Contemporary Microbially Maintained Subglacial Ferrous "Ocean" [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 397-400. by Jill A. Mikucki, Ann Pearson, David T. Johnston, et al.Alexandra V. Turchyn, James Farquhar, Daniel P. Schrag, Ariel D. Anbar, John C. Priscu, Peter A. Lee posted by 6 people michaelbarton idoerg kinestetika jmeppley trfield neils
	Species abundance distribution results from a spatial analogy of central limit theorem [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6691-6695. by Arnošt L. Šizling, David Storch, Eva Šizlingová, Jiří Reif, Kevin J. Gaston posted by 7 people gfox iSEEM djkt trfield archimedian mariopinedakrch yasminlucero
	Evolution of a Bacterial Regulon Controlling Virulence and Mg<sup>2+</sup> Homeostasis [My Copy] PLoS Genet, Vol. 5, No. 3. (20 March 2009), e1000428. by Christian J. Perez, Dongwoo Shin, Igor Zwir, Tammy Latifi, Tricia J. Hadley, Eduardo A. Groisman posted by 1 person trfield
	Internal coarse-graining of molecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6453-6458. by Jérôme Feret, Vincent Danos, Jean Krivine, Russ Harmer, Walter Fontana posted by 11 people jvb leemond31 superpyrin Scis0000002 reyez trfield baker-group sobolevnrm paulschlesinger jjray kshundyak
	Evidence for Metabolic Provisioning by a Common Invertebrate Endosymbiont, <italic>Wolbachia pipientis</italic>, during Periods of Nutritional Stress [My Copy] PLoS Pathog, Vol. 5, No. 4. (3 April 2009), e1000368. by Jeremy C. Brownlie, Bodil N. Cass, Markus Riegler, et al.Joris J. Witsenburg, Iñaki Iturbe-Ormaetxe, Elizabeth A. Mcgraw, Scott L. O'Neill posted by 2 people shuzhens trfield
	Quantifying the Integration of Quorum-Sensing Signals with Single-Cell Resolution [My Copy] PLoS Biol, Vol. 7, No. 3. (24 March 2009), e1000068. by Tao Long, Kimberly C. Tu, Yufang Wang, et al.Pankaj Mehta, N. P. Ong, Bonnie L. Bassler, Ned S. Wingreen posted by 4 people elifsu trfield jjray biomcgary
	Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3976-3981. by D. R. Yoder-Himes, P. S. G. Chain, Y. Zhu, et al.O. Wurtzel, E. M. Rubin, James M. Tiedje, R. Sorek posted by 2 people druvus trfield
	Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3698-3703. by William R. Wikoff, Andrew T. Anfora, Jun Liu, et al.Peter G. Schultz, Scott A. Lesley, Eric C. Peters, Gary Siuzdak posted by 3 people Intestinal immunology sheinsbroek trfield
	Genome-Scale Reconstruction of <italic>Escherichia coli</italic>'s Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000312. by Ines Thiele, Neema Jamshidi, Ronan M. Fleming, Bernhard Palsson posted by 4 people TRHvidsten pablocarb trfield dolchan
	Negative autoregulation linearizes the dose–response and suppresses the heterogeneity of gene expression [My Copy] Proceedings of the National Academy of Sciences (11 March 2009) by Dmitry Nevozhay, Rhys M. Adams, Kevin F. Murphy, Kreš;imir Josić, Gábor Balázsi posted by 3 people cjryan trfield jjray
	Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes [My Copy] Genome Biology, Vol. 10, No. 3. (10 March 2009), R28. by Gabi Kastenmuller, Maria Schenk, Johann Gasteiger, Hans W. Mewes posted by 5 people elipapa druvus natstreet trfield biomcgary
	The Distribution of Fitness Effects of Beneficial Mutations in <italic>Pseudomonas aeruginosa</italic> [My Copy] PLoS Genet, Vol. 5, No. 3. (6 March 2009), e1000406. by Craig R. Maclean, Angus Buckling posted by 3 people diamantis Thaverkamp trfield
	Rapid Pathway Evolution Facilitated by Horizontal Gene Transfers across Prokaryotic Lineages [My Copy] PLoS Genet, Vol. 5, No. 3. (6 March 2009), e1000402. by Wataru Iwasaki, Toshihisa Takagi posted by 4 people fishinwind trfield iSEEM djkt
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted by 11 people natstreet lusk RockmanLab dpollard JustinCrocker BergmanLab daveGerrard emmahe maximilianh trfield idoerg
	Signaling Cascades Modulate the Speed of Signal Propagation through Space [My Copy] PLoS ONE, Vol. 4, No. 2. (27 February 2009), e4639. by Christopher C. Govern, Arup K. Chakraborty posted by 3 people cjryan trfield jjray
	Scaling and self-organized criticality in proteins II [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3113-3118. by J. C. Phillips posted by 3 people trfield reyez amishp
	Transcription factor function and promoter architecture govern the evolution of bacterial regulons [My Copy] Proceedings of the National Academy of Sciences (27 February 2009) by Christian J. Perez, Eduardo A. Groisman posted by 6 people Sjitprasutwit trfield mstumpf djkt provero jjray
	RGG: a general GUI Framework for R scripts. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 74. by Ilhami Visne, Erkan Dilaveroglu, Klemens Vierlinger, et al.Martin Lauss, Ahmet Yildiz, Andreas Weinhaeusel, Christa Noehammer, Friedrich Leisch, Albert Kriegner posted by 27 people ltitodem operon jfr daforerog natstreet guhjy lwaldron Yanno rdiaz siebert nuin trfield pengchy acj2109 Mycology stajich jmeppley fpattyn VGreiff renatomilani BergmanLab cisevol erexhepa Bioinformatics dswan jandot druvus
	A framework for evolutionary systems biology [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 27. by Laurence Loewe posted by 18 people tomhebbron pawelsobko leemond31 maren gwenknight Scis0000002 agomez dswan bertelsen JeremyZucker JoeDunckley Roswell Cancer Crosstalk Zephyrus michaelbarton trfield jjray VGreiff druvus
	RankAggreg, an R package for weighted rank aggregation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 62. by Vasyl Pihur, Susmita Datta, Somnath Datta posted by 12 people dandaman microRNA jfr Bioinformatics - CRUK slv23 daforerog rdiaz trfield provero shikin guhjy mdharsee
	Phylogeny in Aid of the Present and Novel Microbial Lineages: Diversity in <italic>Bacillus</italic> [My Copy] PLoS ONE, Vol. 4, No. 2. (12 February 2009), e4438. by Shalini Porwal, Sadhana Lal, Simrita Cheema, Vipin C. Kalia posted by 1 person trfield
	Short-Term Starvation of Immune Deficient <italic>Drosophila</italic> Improves Survival to Gram-Negative Bacterial Infections [My Copy] PLoS ONE, Vol. 4, No. 2. (16 February 2009), e4490. by Anthony E. Brown, Janina Baumbach, Peter E. Cook, Petros Ligoxygakis posted by 2 people ajaymalik trfield
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted by 15 people icecrown zufar frohike guhjy dipenps coela Scis0000002 alweber daforerog TRHvidsten trfield deanmalmgren shikin provero roys
	Identifying essential genes in Escherichia coli from a metabolic optimization principle. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by Carlotta Martelli, Andrea De Martino, Enzo Marinari, Matteo Marsili, Isaac Pérez P. Castillo posted by 4 people marinari lflorez trfield michaelbarton
	Scaling and self-organized criticality in proteins I [My Copy] Proceedings of the National Academy of Sciences (13 February 2009) by J. C. Phillips posted by 6 people trfield reyez paulschlesinger amishp kevinchannon jjray
	Polymicrobial interactions stimulate resistance to host innate immunity through metabolite perception [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1578-1583. by Matthew M. Ramsey, Marvin Whiteley posted by 1 person trfield
	Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 8. (24 February 2009), pp. 2677-2682. by Gregory E. Sims, Se-Ran Jun, Guohong A. Wu, Sung-Hou Kim posted by 7 people qiang ethanmj druvus trfield iSEEM skembel mhamada