pkonings's Top Recommendations

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	A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies [My Copy] PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000529. by Bryan N. Howie, Peter Donnelly, Jonathan Marchini posted by 9 people engelhardt maren xingxu Journal picks kimorley rdiaz daforerog reyez djkt
	Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies [My Copy] PLoS Genet, Vol. 4, No. 7. (25 July 2008), e1000130. by Clive J. Hoggart, John C. Whittaker, Maria De Iorio, David J. Balding posted by 11 people orzenil rdiaz ajbattle kimorley akmanning daforerog shoshin djkt Stew guhjy Schmidtc
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted by 45 people Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet BergmanLab polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton Bioinformatics dswan reyez kshameer TRHvidsten djkt Journal picks ppgardne
	Rapid and accurate multiple testing correction and power estimation for millions of correlated markers. [My Copy] PLoS genetics, Vol. 5, No. 4. (17 April 2009), e1000456. by Buhm Han, Hyun Min M. Kang, Eleazar Eskin posted by 12 people xingxu brianb nuin buyske ekostem jdbowes guhjy psique ptrobajo emptyhb rdiaz djkt
	IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1449-1450. by Miao-Xin Li, Lin Jiang, Patrick Y. Kao, Pak-C Sham, You-Qiang Song posted by 5 people daforerog guhjy rdiaz jdbowes djkt
	High-throughput, high-accuracy array-based resequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6712-6717. by Jianbiao Zheng, Martin Moorhead, Li Weng, et al.Farooq Siddiqui, Victoria E. H. Carlton, James S. Ireland, Liana Lee, Joseph Peterson, Jennifer Wilkins, Sean Lin, Zhengyan Kan, Somasekar Seshagiri, Ronald W. Davis, Malek Faham posted by 5 people rdiaz djkt guhjy reyez jdbowes
	The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. [My Copy] Nature genetics (8 March 2009) by Patrick Cahan, Yedda Li, Masayo Izumi, Timothy A A. Graubert posted by 6 people rdiaz psique shikin fenghezi djkt jdbowes
	Discovery of Rare Variants via Sequencing: Implications for the Design of Complex Trait Association Studies. [My Copy] PLoS genetics, Vol. 5, No. 5. (May 2009) by B. Li, S. M. Leal posted by 8 people daforerog kimorley reyez psique bertrandservin djkt giovanni jdbowes
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted by 30 people hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez Journal picks qayub fenghezi tonamswish Orengo Group Journal Picks robertrentzsch JLab BergmanLab polivares idonaldson rschulz CTCF Chromatin cvaldes danmaclean
	Prediction and Interaction in Complex Disease Genetics: Experience in Type 1 Diabetes [My Copy] PLoS Genet, Vol. 5, No. 7. (3 July 2009), e1000540. by David G. Clayton posted by 7 people zufar merpublic ptrobajo rdiaz Journal picks kimorley psique
	A multivariate regression approach to association analysis of a quantitative trait network [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i204-212. by Seyoung Kim, Kyung-Ah Sohn, Eric P. Xing posted by 4 people rdiaz guhjy kimorley sameersoi
	Finding the missing heritability of complex diseases. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 747-753. by Teri A. Manolio, Francis S. Collins, Nancy J. Cox, et al.David B. Goldstein, Lucia A. Hindorff, David J. Hunter, Mark I. McCarthy, Erin M. Ramos, Lon R. Cardon, Aravinda Chakravarti, Judy H. Cho, Alan E. Guttmacher, Augustine Kong, Leonid Kruglyak, Elaine Mardis, Charles N. Rotimi, Montgomery Slatkin, David Valle, Alice S. Whittemore, Michael Boehnke, Andrew G. Clark, Evan E. Eichler, Greg Gibson, Jonathan L. Haines, Trudy F. Mackay, Steven A. McCarroll, Peter M. Visscher posted by 18 people virolog timflutre daveGerrard leemachado lp2 natstreet ns6 balajis jclau liqbbi josepe daforerog fenghezi Journal picks rdiaz carolep merpublic djkt
	SHARE: an adaptive algorithm to select the most informative set of SNPs for candidate genetic association [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 680-693. by James Y. Dai, Michael Leblanc, Nicholas L. Smith, Bruce Psaty, Charles Kooperberg posted by 2 people rdiaz djkt
	Aging and Environmental Exposures Alter Tissue-Specific DNA Methylation Dependent upon CpG Island Context [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000602. by Brock C. Christensen, E. Andres Houseman, Carmen J. Marsit, et al.Shichun Zheng, Margaret R. Wrensch, Joseph L. Wiemels, Heather H. Nelson, Margaret R. Karagas, James F. Padbury, Raphael Bueno, David J. Sugarbaker, Ru-Fang Yeh, John K. Wiencke, Karl T. Kelsey posted by 5 people rdiaz greg fenghezi djkt bpcusack
	Comments on sequence normalization of tiling array expression [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2171-2173. by Don Gilbert, Andreas Rechtsteiner posted by 5 people humburg djkt rdiaz Bioinformatics dswan
	A continuous-index hidden Markov jump process for modeling DNA copy number data [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 773-778. by Susann Stjernqvist, Tobias Ryden posted by 2 people djkt rdiaz
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted by 8 people carolep jsatkosk daforerog djkt shikin dswan rdiaz torfinnnome
	A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000465. by Yuzhen Ye, Thomas G. Doak posted by 8 people mstumpf ptrobajo barriot rdiaz michaelbarton kshameer iSEEM djkt
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted by 16 people heliopais dakelley lp2 megraw rdiaz torfinnnome djkt n00c farhat druvus BergmanLab polivares Mycology stajich fpattyn jbhiatt
	Sample size calculations for controlling the distribution of false discovery proportion in microarray experiments [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 694-705. by Tomonori Oura, Shigeyuki Matsui, Koji Kawakami posted by 3 people rdiaz djkt renatomilani
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted by 13 people fstrozzi manduca Journal picks djkt rdiaz sjcockell torfinnnome walshtp nuin natstreet druvus Orengo Group Journal Picks ollieredfernwork
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted by 64 people pekrau Sergey_gerbek mordiano remoteFuture Yanno Pedro Martinez EvoDevo lab Barcelona aaltenburger marekrud guhjy dolchan frohike operon Orengo Group Journal Picks CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Bioinformatics - CRUK Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom ccsbs wei_tang fenghezi BergmanLab cisevol structural_bioinformatics McCammon barry sdaehne druvus
	Common Regulatory Variation Impacts Gene Expression in a Cell Type-Dependent Manner [My Copy] Science, Vol. 325, No. 5945. (4 September 2009), pp. 1246-1250. by Antigone S. Dimas, Samuel Deutsch, Barbara E. Stranger, et al.Stephen B. Montgomery, Christelle Borel, Homa Attar-Cohen, Catherine Ingle, Claude Beazley, Maria G. Arcelus, Magdalena Sekowska, Marilyne Gagnebin, James Nisbett, Panos Deloukas, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis posted by 13 people vplagnol cajunsushi ajbattle xianjun kintoki TRHvidsten djkt fenghezi rdiaz humburg guhjy frohike SeaBird
	Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2473-2477. by Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar posted by 10 people Garamonfok TRHvidsten djkt rdiaz natstreet nuin sebastien_vigneau maximilianh Jarman Lab isimpson
	The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (3 July 2009), e1000431. by The Reference Genome Group of the Gene Ontology Consortium posted by 23 people Zephyrus bertelsen rdiaz ptrobajo fgibson NickFurnham guhjy VGreiff cabbagesofdoom Keywan druvus natstreet gjuggler biomcgary polivares tfuji Bioinformatics dswan kiekyon TRHvidsten djkt daforerog Journal picks
	A Classifier-based approach to identify genetic similarities between diseases [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i21-29. by Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou posted by 5 people jfr zufar rdiaz ddunbar djkt
	Fewer permutations, more accurate P-values [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i161-168. by Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich posted by 12 people heliopais jfr rdiaz Ayest farhat Journal picks AlexBateman bmajoros idonaldson TRHvidsten djkt sameersoi
	Predictor correlation impacts machine learning algorithms: implications for genomic studies [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1884-1890. by Kristin K. Nicodemus, James D. Malley posted by 6 people rdiaz Orengo Group Journal Picks ollieredfernwork TRHvidsten djkt mhamada
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted by 18 people hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. [My Copy] PLoS genetics, Vol. 5, No. 5. (15 May 2009), e1000477. by Chris C. Spencer, Zhan Su, Peter Donnelly, Jonathan Marchini posted by 16 people Geknitics Roswell Cancer Crosstalk Zephyrus rdiaz psique natstreet Journal picks PabloMarin xingxu guhjy sandfire daforerog reyez bertrandservin djkt giovanni
	Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy. [My Copy] PLoS genetics, Vol. 5, No. 5. (1 May 2009), e1000464. by Wanwan Tang, Xuebing Wu, Rui Jiang, Yanda Li posted by 6 people rdiaz nuin guhjy bservin djkt psique
	Many-core algorithms for statistical phylogenetics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1370-1376. by Marc A. Suchard, Andrew Rambaut posted by 11 people mlangill druvus nuin AlexBateman bmajoros iSEEM djkt jmeppley svenrahmann rdiaz Neeperando
	CpG Islands: Starting Blocks for Replication and Transcription [My Copy] PLoS Genet, Vol. 5, No. 4. (10 April 2009), e1000454. by Marie-Noëlle Prioleau posted by 3 people reyez rdiaz djkt
	Breakpoint graphs and ancestral genome reconstructions. [My Copy] Genome research (6 April 2009) by Max A A. Alekseyev, Pavel A A. Pevzner posted by 3 people maximilianh djkt rdiaz
	Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1447-1448. by Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby posted by 7 people jfr guhjy druvus nuin rdiaz djkt giovanni
	Network-based multiple locus linkage analysis of expression traits [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1390-1396. by Wei Pan posted by 5 people rdiaz ajbattle gsiwo djkt guhjy
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted by 16 people jfr jandot ewilban1 BergmanLab polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz paszkows
	Segmental copy number variation shapes tissue transcriptomes. [My Copy] Nature genetics (8 March 2009) by Charlotte N N. Henrichsen, Nicolas Vinckenbosch, Sebastian Zöllner, et al.Evelyne Chaignat, Sylvain Pradervand, Frédéric Schütz, Manuel Ruedi, Henrik Kaessmann, Alexandre Reymond posted by 12 people leemachado stubrown absterga lwaldron psique bertrandservin fenghezi megraw djkt rdiaz daforerog buyske
	A simulation-approximation approach to sample size planning for high-dimensional classification studies [My Copy] Biostat, Vol. 10, No. 3. (1 July 2009), pp. 424-435. by Perry de Valpine, Hans-Marcus Bitter, Michael P. S. Brown, Jonathan Heller posted by 4 people rdiaz dekay23 djkt guhjy
	The genomic architecture of segmental duplications and associated copy number variants in dogs [My Copy] Genome Research, Vol. 19, No. 3. (March 2009), pp. 491-499. by Thomas J. Nicholas, Ze Cheng, Mario Ventura, Katrina Mealey, Evan E. Eichler, Joshua M. Akey posted by 4 people bertrandservin rdiaz dakelley djkt
	A method for constructing a confidence bound for the actual error rate of a prediction rule in high dimensions [My Copy] Biostat, Vol. 10, No. 2. (1 April 2009), pp. 282-296. by Kevin K. Dobbin posted by 4 people jfr rdiaz lptolik djkt
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted by 18 people BergmanLab daveGerrard ongenetics timflutre FuncGen thokall bernadettgaal RockmanLab dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt
	QVALITY: non-parametric estimation of q-values and posterior error probabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 964-966. by Lukas Käll, John D. Storey, William Stafford S. Noble posted by 6 people guhjy jfr djkt cassj nuin rdiaz
	Papers on Normalization, Variable Selection, Classification, or Clustering of Microarray Data. [My Copy] Bioinformatics (Oxford, England) (10 February 2009) by David M M. Rocke, Trey Ideker, Olga Troyanskaya, John Quackenbush, Joaquin Dopazo posted by 6 people rdiaz djkt dswan neils Zephyrus renatomilani
	Mutation Patterns in the Human Genome: More Variable Than Expected [My Copy] PLoS Biol, Vol. 7, No. 2. (3 February 2009), e1000028. by Laurent Duret posted by 10 people Garamonfok rdiaz structural_bioinformatics Bioinformatics barry leelarcombe idoerg aprasad djkt gjuggler
	Repeatability of published microarray gene expression analyses [My Copy] Nature Genetics, Vol. 41, No. 2. (28 January 2008), pp. 149-155. by John P. A. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedin C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted by 23 people hzoltan Roswell Cancer Crosstalk heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows
	Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000218. by Mark Yandell, Barry Moore, Fidel Salas, et al.Chris Mungall, Andrew Macbride, Charles White, Martin G. Reese posted by 10 people biomcgary druvus daforerog rsantana Zalanszabo rdiaz bpcusack cabbagesofdoom grahamc djkt
	On the frequency of copy number variants [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2350-2355. by Iuliana Ionita-Laza, Nan M. Laird, Benjamin A. Raby, Scott T. Weiss, Christoph Lange posted by 3 people psique rdiaz djkt
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted by 15 people shikin sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted by 22 people shikin vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Roswell Cancer Crosstalk Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy
	A robust statistical method for case-control association testing with copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1245-1252. by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, et al.Richard Redon, Jonathan Marchini, David Clayton, Matthew E. Hurles posted by 18 people biovils daed zufar daforerog pengchy ptrobajo vplagnol waszak caseybrown Roswell Cancer Crosstalk Zephyrus dakelley buyske misonneh djkt rdiaz Stew guhjy
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted by 38 people hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin GeneGo psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 Koch_Lab
	Theoretical measures of relative performance of classifiers for high dimensional data with small sample sizes [My Copy] Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 70, No. 1. (February 2008), pp. 159-173. by Peter Hall, Yvonne Pittelkow, Malay Ghosh posted by 2 people rdiaz djkt
	A genome-wide association study of global gene expression [My Copy] Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1202-1207. by Anna L. Dixon, Liming Liang, Miriam F. Moffatt, et al.Wei Chen, Simon Heath, Kenny C. C. Wong, Jenny Taylor, Edward Burnett, Ivo Gut, Martin Farrall, G. Mark Lathrop, Goncalo R. Abecasis, William O. C. Cookson posted by 13 people daforerog turnersd caseybrown tg150 xingxu gruberjd balicea rdiaz djkt vplagnol jo_davies mimulus_99 ptrobajo
	The role of site accessibility in microRNA target recognition [My Copy] Nature Genetics, Vol. 39, No. 10. (23 September 2007), pp. 1278-1284. by Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal posted by 19 people frohike daforerog alessandroparini jfr mtagaya rdiaz Hosna djkt Garamonfok physics bootsy epigenetics lp2 cabbagezs microRNA heliopais uwe yavanna maralena
	RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1484-1488. by Philipp Kapranov, Jill Cheng, Sujit Dike, et al.David A. Nix, Radharani Duttagupta, Aarron T. Willingham, Peter F. Stadler, Jana Hertel, Jorg Hackermuller, Ivo L. Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R. Gingeras posted by 19 people gdb maximilianh GustavoLacerda marcius alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd EisenLab WetBiology BioinfoCIPF SGU-CIPF elfar xingxu
	Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted by 38 people biovils lp2 daveGerrard sameersoi timhubbard Roswell Cancer Crosstalk Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller Visiting Position waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu Bioinformatics EisenLab cisevol cis-regulatory-evolution caseybrown frohike jandot
	Semi-supervised methods to predict patient survival from gene expression data. [My Copy] PLoS Biol, Vol. 2, No. 4. (April 2004) by E. Bair, R. Tibshirani posted by 6 people srp33 kristen djkt winterschlaefer jfr rdiaz
	Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited [My Copy] Biostatistics, Vol. 7, No. 2. (April 2006), pp. 268-285. by Segal, R. Mark posted by 3 people jfr rdiaz djkt
	Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies. [My Copy] BMC genetics, Vol. 10, No. 1. (16 June 2009), 27. by Ke Hao, Eugene Chudin, Joshua McElwee, Eric E. Schadt posted by 3 people rdiaz guhjy jdbowes
	Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysis. [My Copy] PLoS genetics, Vol. 5, No. 3. (20 March 2009), e1000432. by Brett A. McKinney, James E. Crowe, Jingyu Guo, Dehua Tian posted by 6 people daforerog guhjy RockmanLab dpollard jdbowes rdiaz
	Advanced analysis and visualization of gene copy number and expression data. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by R. Autio, M. Saarela, A. K. Järvinen, S. Hautaniemi, J. Astola posted by 4 people jfr rdiaz Terkko jdbowes
	Using biological networks to search for interacting loci in genome-wide association studies [My Copy] European Journal of Human Genetics, Vol. 17, No. 10. (11 March 2009), pp. 1231-1240. by Mathieu Emily, Thomas Mailund, Jotun Hein, Leif Schauser, Mikkel H. Schierup posted by 9 people Geknitics Journal picks kimorley jo_davies daforerog psique guhjy frohike jdbowes
	A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation [My Copy] PLoS Genet, Vol. 5, No. 1. (30 January 2009), e1000327. by P. J. Hastings, Grzegorz Ira, James R. Lupski posted by 4 people sameersoi ahornby jdbowes djkt
	Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta) [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000346. by Jeremiah D. Degenhardt, Paola de Candia, Adrien Chabot, et al.Stuart Schwartz, Les Henderson, Binhua Ling, Meredith Hunter, Zhaoshi Jiang, Robert E. Palermo, Michael Katze, Evan E. Eichler, Mario Ventura, Jeffrey Rogers, Preston Marx, Yoav Gilad, Carlos D. Bustamante posted by 4 people jsatkosk xingxu djkt jdbowes
	Pervasive Hitchhiking at Coding and Regulatory Sites in Humans [My Copy] PLoS Genet, Vol. 5, No. 1. (16 January 2009), e1000336. by James J. Cai, J. Michael Macpherson, Guy Sella, Dmitri A. Petrov posted by 9 people operon progersweets gjuggler jdbowes djkt bpcusack RockmanLab cis-regulatory-evolution dpollard
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	Recurrent copy number alterations in BRCA1-mutated ovarian tumors alter biological pathways. [My Copy] Human mutation (2 October 2009) by Karin Leunen, Olivier Gevaert, Anneleen Daemen, et al.Vanessa Vanspauwen, Geneviève Michils, Bart De Moor, Philippe Moerman, Ignace Vergote, Eric Legius posted by 2 people frohike rdiaz
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	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted by 35 people pmcarlton alhufton psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer JLab BergmanLab polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler Journal picks gdb gbloeb
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	What Happened to Global Warming? Scientists Say Just Wait a Bit [My Copy] Science, Vol. 326, No. 5949. (2 October 2009), pp. 28-a-29. by Richard A. Kerr posted by 4 people rdiaz climate_change UNFCCC jago
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	Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3121-3127. by Peter J. Park, Sek W. Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane posted by 4 people kshameer ptrobajo rdiaz thomaskelder
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	Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling [My Copy] BMC Systems Biology, Vol. 3, No. 1. (28 September 2009), 98. by Dominik Wittmann, Jan Krumsiek, Julio S. Rodriguez, Douglas Lauffenburger, Steffen Klamt, Fabian Theis posted by 6 people colinveal perkeo cmzmasek brianb rdiaz peterhilbers
	Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 4036-4042. by Kuan-Ting T. Kuo, Bin Guan, Yuanjian Feng, et al.Tsui-Lien L. Mao, Xu Chen, Natini Jinawath, Yue Wang, Robert J. Kurman, Ie-Ming e. M. Shih, Tian-Li L. Wang posted by 1 person rdiaz