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	Reconstruction algorithm for single-particle diffraction imaging experiments [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 026705. by Ne Te Duane Loh, Veit Elser posted by 1 person FilipeMaia
	Ensemble Refinement of Protein Crystal Structures: Validation and Application [My Copy] Structure, Vol. 15, No. 9. (11 September 2007), pp. 1040-1052. by Elena J. Levin, Dmitry A. Kondrashov, Gary E. Wesenberg, Phillips Jr posted by 1 person FilipeMaia
	Phase reconstruction from intensity measurements in linear systems [My Copy] J. Opt. Soc. Am. A, Vol. 20, No. 6. (1 June 2003), pp. 1046-1049. by Martin J. Bastiaans, Kurt B. Wolf posted by 2 people FilipeMaia pick600
	Unique Phase Recovery for Nonperiodic Objects [My Copy] Physical Review Letters, Vol. 91, No. 20. (Nov 2003), 203902. by K. A. Nugent, A. G. Peele, H. N. Chapman, A. P. Mancuso posted by 2 people FilipeMaia pick600
	Phase retrieval from images in the presence of first-order vortices [My Copy] Physical Review E, Vol. 63, No. 3. (Feb 2001), 037602. by L. J. Allen, H. M. L. Faulkner, K. A. Nugent, M. P. Oxley, D. Paganin posted by 2 people FilipeMaia pick600
	Image deconvolution using a micro genetic algorithm [My Copy] Optics Communications, Vol. 140, No. 1-3. (15 July 1997), pp. 6-10. by E. Johnson posted by 2 people FilipeMaia pick600
	X-ray noninterferometric phase imaging: a unified picture [My Copy] J. Opt. Soc. Am. A, Vol. 24, No. 2. (1 February 2007), pp. 536-547. by Keith A. Nugent posted by 2 people FilipeMaia pick600
	Free electron lasers: First light from hard X-ray laser [My Copy] Nat Photon, Vol. 3, No. 7. (July 2009), pp. 375-377. by Brian Mcneil posted by 4 people FilipeMaia pick600 Oxford Hooker Group tomatoman
	Low temperature X-ray investigation of structural distributions in myoglobin. [My Copy] European biophysics journal : EBJ, Vol. 15, No. 4. (1987), pp. 237-249. by F. Parak, H. Hartmann, K. D. Aumann, et al.H. Reuscher, G. Rennekamp, H. Bartunik, W. Steigemann posted by 1 person FilipeMaia
	Protein crystal dynamics studied by time-resolved analysis of X-ray diffuse scattering [My Copy] Nature, Vol. 338, No. 6217. (20 April 1989), pp. 665-666. by G. U. Nienhaus, J. Heinzl, E. Huenges, F. Parak posted by 1 person FilipeMaia
	The structures of the monoclinic and orthorhombic forms of hen egg-white lysozyme at 6 \AA resolution [My Copy] Acta Crystallographica Section B, Vol. 38, No. 3. (Mar 1982), pp. 778-783. by P. J. Artymiuk, C. C. F. Blake, D. W. Rice, K. S. Wilson posted by 1 person FilipeMaia
	Phase retrieval with Fourier-weighted projections [My Copy] J. Opt. Soc. Am. A, Vol. 25, No. 3. (1 March 2008), pp. 701-709. by Manuel Guizar-Sicairos, James R. Fienup posted by 2 people pick600 FilipeMaia
	A non-iterative reconstruction method for direct and unambiguous coherent diffractive imaging [My Copy] Opt. Express, Vol. 15, No. 16. (6 August 2007), pp. 9954-9962. by S. G. Podorov, K. M. Pavlov, D. M. Paganin posted by 2 people pick600 FilipeMaia
	Direct image reconstruction from a Fourier intensity pattern using HERALDO [My Copy] Opt. Lett., Vol. 33, No. 22. (15 November 2008), pp. 2668-2670. by Manuel Guizar-Sicairos, James R. Fienup posted by 2 people pick600 FilipeMaia
	Zur Frage der Einwirkung der Wärmebewegung auf die Interferenz von Röntgenstrahlen [My Copy] Zeitschrift für Physik A Hadrons and Nuclei, Vol. 17, No. 1. (1 December 1923), pp. 398-408. by Ivar Waller posted by 1 person FilipeMaia
	$My PDF huldt_03_diffraction.pdf$ Diffraction imaging of single particles and biomolecules [My Copy] Journal of Structural Biology, Vol. 144, No. 1-2. (October 2003), pp. 219-227. by G. Huldt posted by 1 person FilipeMaia
	Structural studies of melting on the picosecond time scale. [My Copy] Physical chemistry chemical physics : PCCP, Vol. 10, No. 42. (14 November 2008), pp. 6344-6349. by D. Spoel, F. R. Maia, C. Caleman posted by 1 person FilipeMaia
	New designs for inhibitors of the NF-κB: DNA binding [My Copy] Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta), Vol. 113, No. 4. (1 May 2005), pp. 197-204. by Pedro A. Fernandes, Elsa S. Henriques, Vineet Pande, et al.Maria Ramos, Ana R. Maia, André A. Almeida, Bruno F. Silva, Carla M. Ribeiro, César F. Ribeiro, David S. Ribeiro, Diana A. Fonseca, Eva M. Cunha, Filipe R. Maia, Joana A. Pereira, João P. Pacheco, Joaquim A. Ferreira, Liliana R. Matos, Manuel A. Pinto, Maria C. Borges, Paulo J. Magalhães, Pedro F. Teixeira, Pedro N. Veloso, Ricarte J. Ferreira, Sandro S. Gomes, Tiago F. Barros, Tiago S. Selão, Virgínia M. Fernandes posted by 1 person FilipeMaia
	Design of 2-cyclopentenone derivatives with enhanced NF-κB: DNA binding inhibitory properties [My Copy] Journal of Molecular Structure: THEOCHEM, Vol. 685, No. 1-3. (11 October 2004), pp. 73-82. by Pedro A. Fernandes, Ana I. Cruz, Ana R. Maia, et al.André A. Almeida, André M. da Silva, Bruno F. Silva, Carla M. Ribeiro, César F. Ribeiro, Eva M. Cunha, Filipe R. Maia posted by 1 person FilipeMaia
	The binding of xanthone derivatives to transthyretin [My Copy] Biochemical Pharmacology, Vol. 70, No. 12. (05 December 2005), pp. 1861-1869. by F. Maia, M. Almeida, L. Gales, et al.A. Kijjoa, M. Pinto, M. Saraiva, A. Damas posted by 1 person FilipeMaia
	Feasibility of imaging living cells at subnanometer resolutions by ultrafast X-ray diffraction [My Copy] Quarterly Reviews of Biophysics, Vol. 41, No. 3-4. (2008), pp. 181-204. by Magnus Bergh, Gösta Huldt, Nicusor Tîmneanu, Filipe R. N. C. Maia, Janos Hajdu posted by 1 person FilipeMaia
	Structure from fleeting illumination of faint spinning objects in flight [My Copy] Nat Phys, Vol. 5, No. 1. (January 2009), pp. 64-67. by Russell Fung, Valentin Shneerson, Dilano K. Saldin, Abbas Ourmazd posted by 2 people FilipeMaia pick600
	Unified model of secondary electron cascades in diamond [My Copy] Journal of Applied Physics, Vol. 97, No. 6. (2005), 064905. by Beata Ziaja, Richard A. London, Janos Hajdu posted by 1 person FilipeMaia
	Auger electron cascades in water and ice [My Copy] Chemical Physics, Vol. 299, No. 2-3. (19 April 2004), pp. 277-283. by N. Tîmneanu posted by 1 person FilipeMaia
	Shake-up and shake-off excitations with associated electron losses in X-ray studies of proteins. [My Copy] Protein science : a publication of the Protein Society, Vol. 10, No. 12. (December 2001), pp. 2480-2484. by P. Persson, S. Lunell, A. Szöke, B. Ziaja, J. Hajdu posted by 1 person FilipeMaia
	On the Extendibility of X-ray Crystallography to Noncrystals [My Copy] Acta Crystallographica Section A, Vol. 54, No. 2. (Mar 1998), pp. 232-239. by D. Sayre, H. N. Chapman, J. Miao posted by 1 person FilipeMaia
	Three-dimensional reconstruction of the shape of human wart virus using spatial correlations [My Copy] Ultramicroscopy, Vol. 17, No. 3. (1985), pp. 251-262. by Z. Kam, I. Gafni posted by 1 person FilipeMaia
	Determination of Macromolecular Structure in Solution by Spatial Correlation of Scattering Fluctuations [My Copy] Macromolecules, Vol. 10, No. 5. (1 September 1977), pp. 927-934. by Zvi Kam posted by 1 person FilipeMaia
	Structure of isolated biomolecules obtained from ultrashort x-ray pulses: exploiting the symmetry of random orientations [My Copy] Journal of Physics: Condensed Matter, Vol. 21, No. 13. (2009), 134014. by D. K. Saldin, V. L. Shneerson, R. Fung, A. Ourmazd posted by 1 person FilipeMaia
	Classification and averaging of random orientation single macromolecular diffraction patterns at atomic resolution [My Copy] Journal of Structural Biology, Vol. 166, No. 2. (May 2009), pp. 226-233. by G. Bortel, G. Faigel, M. Tegze posted by 1 person FilipeMaia
	X-ray image reconstruction from a diffraction pattern alone [My Copy] Physical Review B, Vol. 68, No. 14. (Oct 2003), 140101. by S. Marchesini, H. He, H. N. Chapman, et al.Hau S. P. Riege, A. Noy, M. R. Howells, U. Weierstall, J. C. H. Spence posted by 1 person FilipeMaia
	X-ray imaging beyond the limits [My Copy] Nat Mater, Vol. 8, No. 4. (April 2009), pp. 299-301. by Henry N. Chapman posted by 2 people FilipeMaia pick600
	X-ray imaging: Caught in a spin [My Copy] Nat Phys, Vol. 5, No. 1. (January 2009), pp. 17-18. by Keith A. Nugent posted by 4 people pick600 FilipeMaia Oxford Hooker Group tomatoman
	Ab initio compressive phase retrieval [My Copy] (11 Sep 2008) by S. Marchesini posted by 2 people FilipeMaia pak
	Conformational Substates in Proteins [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 17, No. 1. (1988), pp. 451-479. by H. Frauenfelder, F. Parak, R. D. Young posted by 2 people FilipeMaia ruvido
	Phase retrieval and saddle-point optimization [My Copy] J. Opt. Soc. Am. A, Vol. 24, No. 10. (1 October 2007), pp. 3289-3296. by Stefano Marchesini posted by 2 people FilipeMaia smarchesini
	Invited Article: A unified evaluation of iterative projection algorithms for phase retrieval [My Copy] Review of Scientific Instruments, Vol. 78, No. 1. (2007) by S. Marchesini posted by 2 people FilipeMaia smarchesini
	Phase retrieval algorithms: a comparison AU - Fienup, J. R. PB - OSA [My Copy] Appl. Opt., Vol. 21, No. 15. (1982), pp. 2758-2769 UR - http://ao.osa.org/abstract.cfm?URI=ao-21-15-2758. posted by 3 people pick600 FilipeMaia tomz17
	First operation of a free-electron laser generating GW power radiation at 32 nm wavelength [My Copy] The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics, Vol. 37, No. 2. (13 February 2006), pp. 297-303. by V. Ayvazyan, N. Baboi, J. Bähr, et al.V. Balandin, B. Beutner, A. Brandt, I. Bohnet, A. Bolzmann, R. Brinkmann, O. I. Brovko, J. P. Carneiro, S. Casalbuoni, M. Castellano, P. Castro, L. Catani, E. Chiadroni, S. Choroba, A. Cianchi, H. Delsim-Hashemi, G. Di Pirro, M. Dohlus, S. Düsterer, H. T. Edwards, B. Faatz, A. A. Fateev, J. Feldhaus, K. Flöttmann, J. Frisch, L. Fröhlich, T. Garvey, U. Gensch, N. Golubeva, H. J. Grabosch, B. Grigoryan, O. Grimm, U. Hahn, J. H. Han, M. V. Hartrott, K. Honkavaara, M. Hüning, R. Ischebeck, E. Jaeschke, M. Jablonka, R. Kammering, V. Katalev, B. Keitel, S. Khodyachykh, Y. Kim, V. Kocharyan, M. Körfer, M. Kollewe, D. Kostin, D. Krämer, M. Krassilnikov, G. Kube, L. Lilje, T. Limberg, D. Lipka, F. Löhl, M. Luong, C. Magne, J. Menzel, P. Michelato, V. Miltchev, M. Minty, W. D. Möller, L. Monaco, W. Müller, M. Nagl, O. Napoly, P. Nicolosi, D. Nölle, T. Nuñez, A. Oppelt, C. Pagani, R. Paparella, B. Petersen, B. Petrosyan, J. Pflüger, P. Piot, E. Plönjes, L. Poletto, D. Proch, D. Pugachov, K. Rehlich, D. Richter, S. Riemann, M. Ross, J. Rossbach, M. Sachwitz, E. L. Saldin, W. Sandner, H. Schlarb, B. Schmidt, M. Schmitz, P. Schmüser, J. R. Schneider, E. A. Schneidmiller, H. J. Schreiber, S. Schreiber, A. V. Shabunov, D. Sertore, S. Setzer, S. Simrock, E. Sombrowski, L. Staykov, B. Steffen, F. Stephan, F. Stulle, K. P. Sytchev, H. Thom, K. Tiedtke, M. Tischer, R. Treusch, D. Trines, I. Tsakov, A. Vardanyan, R. Wanzenberg, T. Weiland, H. Weise, M. Wendt, I. Will, A. Winter, K. Wittenburg, M. V. Yurkov, I. Zagorodnov, P. Zambolin, K. Zapfe posted by 1 person FilipeMaia
	Reconstruction of an object from its symmetry-averaged diffraction pattern [My Copy] Acta Crystallographica Section A, Vol. 64, No. 2. (Mar 2008), pp. 273-279. by Veit Elser, R. P. Millane posted by 1 person FilipeMaia
	The energy landscapes and motions of proteins. [My Copy] Science (New York, N.Y.), Vol. 254, No. 5038. (13 December 1991), pp. 1598-1603. by H. Frauenfelder, S. G. Sligar, P. G. Wolynes posted by 4 people xdeupi FilipeMaia naitsabes kjell
	Operation of a free-electron laser from the extreme ultraviolet to the water window [My Copy] Nat Photon, Vol. 1, No. 6. (June 2007), pp. 336-342. by W. Ackermann, G. Asova, V. Ayvazyan, et al.A. Azima, N. Baboi, J. Bahr, V. Balandin, B. Beutner, A. Brandt, A. Bolzmann, R. Brinkmann, O. I. Brovko, M. Castellano, P. Castro, L. Catani, E. Chiadroni, S. Choroba, A. Cianchi, J. T. Costello, D. Cubaynes, J. Dardis, W. Decking, H. Delsim-Hashemi, A. Delserieys, G. Di Pirro, M. Dohlus, S. Dusterer, A. Eckhardt, H. T. Edwards, B. Faatz, J. Feldhaus, K. Flottmann, J. Frisch, L. Frohlich, T. Garvey, U. Gensch, Gerthch, M. Gorler, N. Golubeva, H. J. Grabosch, M. Grecki, O. Grimm, K. Hacker, U. Hahn, J. H. Han, K. Honkavaara, T. Hott, M. Huning, Y. Ivanisenko, E. Jaeschke, W. Jalmuzna, T. Jezynski, R. Kammering, V. Katalev, K. Kavanagh, E. T. Kennedy, S. Khodyachykh, K. Klose, V. Kocharyan, M. Korfer, M. Kollewe, W. Koprek, S. Korepanov, D. Kostin, M. Krassilnikov, G. Kube, M. Kuhlmann, C. L. S. Lewis, L. Lilje, T. Limberg, D. Lipka, F. Lohl, H. Luna, M. Luong, M. Martins, M. Meyer, P. Michelato, V. Miltchev, W. D. Moller, L. Monaco, W. F. O. Muller, O. Napieralski, O. Napoly, P. Nicolosi, D. Nolle, T. Nunez, A. Oppelt, C. Pagani, R. Paparella, N. Pchalek, J. Pedregosa-Gutierrez, B. Petersen, B. Petrosyan, G. Petrosyan, L. Petrosyan, J. Pfluger, E. Plonjes, L. Poletto, K. Pozniak, E. Prat, D. Proch, P. Pucyk, P. Radcliffe, H. Redlin, K. Rehlich, M. Richter, M. Roehrs, J. Roensch, R. Romaniuk, M. Ross, J. Rossbach, V. Rybnikov, M. Sachwitz, E. L. Saldin, W. Sandner, H. Schlarb, B. Schmidt, M. Schmitz, P. Schmuser, J. R. Schneider, E. A. Schneidmiller, S. Schnepp, S. Schreiber, M. Seidel, D. Sertore, A. V. Shabunov, C. Simon, S. Simrock, E. Sombrowski, A. A. Sorokin, P. Spanknebel, R. Spesyvtsev, L. Staykov, B. Steffen, F. Stephan, F. Stulle, H. Thom, K. Tiedtke, M. Tischer, S. Toleikis, R. Treusch, D. Trines, I. Tsakov, E. Vogel, T. Weiland, H. Weise, M. Wellhofer, M. Wendt, I. Will, A. Winter, K. Wittenburg, W. Wurth, P. Yeates, M. V. Yurkov, I. Zagorodnov, K. Zapfe posted by 4 people FilipeMaia pazi tomatoman Oxford Hooker Group
	Interactive visualization of electron density slices [My Copy] Journal of Applied Crystallography by Filipe R. N. C. Maia posted by 1 person FilipeMaia
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 50 people krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	Catalytic Mechanism of DNA Backbone Cleavage by the Restriction Enzyme EcoRV: A Quantum Mechanical/Molecular Mechanical Analysis [My Copy] Biochemistry, Vol. 48, No. 38. (29 September 2009), pp. 9061-9075. by Petra Imhof, Stefan Fischer, Jeremy C. Smith posted by 1 person jmparks
	Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses [My Copy] FASEB J., Vol. 22, No. 2. (1 February 2008), pp. 338-342. by Matthew E. Falagas, Eleni I. Pitsouni, George A. Malietzis, Georgios Pappas posted by 66 people sfalsharif cyounkin Tomste cphelps aaltenburger radagabriel Nursing Essentials bhengeveld pick600 mawds khan004 niathena jeffcrow jmparks R_C_Cordeiro lyss fabiopietrucci tjpp tarokiritani meikipp reginacastro nuttpo CulCog msampson rodney abc623 tnhh jshigh LabDros gwallau sniklas MurphysLab Integrative Expertise for Global Health jago teachingaging thegoose bertelsen bibliotecaria jenniferwilms beska rickl druvus ceft tanyacovi6 carelcad LEONRANGEL microcosmosinagotable MARCOUNAM eudominguezmartin artaban421 frohike nhoussos daforerog lesikv simdoc lmichan rrbarb A_Hoogendam cyrille hpiwowar JSicot Gaetan ashko lilith guhjy dullhunk
	Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme. [My Copy] Biophys J, Vol. 90, No. 4. (15 February 2006) by M. Buck, S. Bouguet-Bonnet, R. W. Pastor, A. D. MacKerell posted by 2 people jmparks allmensch
	All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins† [My Copy] The Journal of Physical Chemistry B, Vol. 102, No. 18. (1 April 1998), pp. 3586-3616. by A. D. MacKerell, D. Bashford, Bellott, et al.R. L. Dunbrack, J. D. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Nguyen, B. Prodhom, W. E. Reiher, B. Roux, M. Schlenkrich, J. C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus posted by 13 people jmparks dsmueller rpetrenko jrperillaj Diego_Prada oceanwind dfgreen mkrishna timg dimka ttjoseph papatonyhill ssomani
	High Local Concentration: A Fundamental Strategy of Life [My Copy] Journal of Molecular Biology (31 October 2009) by Stefan Oehler, Benno Müller-Hill posted by 3 people Orengo Group Journal Picks bdessailly RamuAnandakrishnan
	Coarse Point Charge Models For Proteins From Smoothed Molecular Electrostatic Potentials [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Laurence Leherte, Daniel P. Vercauteren posted by 1 person RamuAnandakrishnan
	Correct virial formulation in the isotropic periodic sum method [My Copy] The Journal of Chemical Physics, Vol. 131, No. 16. (2009), 164103. by Iordan H. Hristov, Reginald Paul, Stephen J. Paddison posted by 1 person RamuAnandakrishnan
	Efficient nonbonded interactions for molecular dynamics on a graphics processing unit [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Peter Eastman, Vijay S. Pande posted by 2 people klexa RamuAnandakrishnan
	RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble [My Copy] RNA, Vol. 11, No. 8. (August 2005), pp. 1157-1166. by Y. E. Ding, Chi Y. U. Chan, Charles E. Lawrence posted by 1 person RamuAnandakrishnan
	An image-based reaction field method for electrostatic interactions in molecular dynamics simulations of aqueous solutions [My Copy] The Journal of Chemical Physics, Vol. 131, No. 15. (2009), 154103. by Yuchun Lin, Andrij Baumketner, Shaozhong Deng, Zhenli Xu, Donald Jacobs, Wei Cai posted by 3 people agrossfield dlimmer RamuAnandakrishnan
	Conserving energy during molecular dynamics simulations of water, proteins, and proteins in water [My Copy] Journal of Computational Chemistry, Vol. 11, No. 10. (1990), pp. 1169-1180. by Douglas B. Kitchen, Fumio Hirata, John D. Westbrook, Ronald Levy, David Kofke, Martin Yarmush posted by 1 person RamuAnandakrishnan
	Dynamics and function of compact nucleosome arrays. [My Copy] Nature structural & molecular biology, Vol. 16, No. 9. (September 2009), pp. 938-944. by Michael G. Poirier, Eugene Oh, Hannah S. Tims, Jonathan Widom posted by 2 people sebastien_vigneau RamuAnandakrishnan
	Universal Solvation Model Based on the Generalized Born Approximation with Asymmetric Descreening [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 9. (8 September 2009), pp. 2447-2464. by Aleksandr V. Marenich, Christopher J. Cramer, Donald G. Truhlar posted by 3 people sobolevnrm RamuAnandakrishnan acpan
	Nucleosome positioning as a determinant of exon recognition [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 9. (16 August 2009), pp. 996-1001. by Hagen Tilgner, Christoforos Nikolaou, Sonja Althammer, et al.Michael Sammeth, Miguel Beato, Juan Valcarcel, Roderic Guigo posted by 5 people inesdesantiago sebastien_vigneau fenghezi RamuAnandakrishnan aalibes
	Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials [My Copy] Protein Science, Vol. 9999, No. 9999. (2009), NA. by Matsuyuki Shirota, Takashi Ishida, Kengo Kinoshita posted by 1 person RamuAnandakrishnan
	Evaluating the Performance of the ff99SB Force Field Based on NMR Scalar Coupling Data [My Copy] Vol. 97, No. 3. (5 August 2009), pp. 853-856. by Lauren Wickstrom, Asim Okur, Carlos Simmerling posted by 1 person RamuAnandakrishnan
	R/BHC: fast Bayesian hierarchical clustering for microarray data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (6 August 2009), 242. by Richard Savage, Katherine Heller, Yang Xu, et al.Zoubin Ghahramani, William Truman, Murray Grant, Katherine Denby, David Wild posted by 12 people ptrobajo meanerelk nuin rdiaz guhjy Bioinformatics lwaldron rschulz phoenixzxl barriot RamuAnandakrishnan erexhepa
	Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (5 August 2009), 240. by Tao Xu, JianLei Gu, Yan Zhou, LinFang Du posted by 10 people dipenps rdiaz tonamswish guhjy lwaldron dswan RamuAnandakrishnan barriot kshameer renatomilani
	Stabilization of protein structure by interaction of [alpha]-helix dipole with a charged side chain [My Copy] Nature, Vol. 335, No. 6192. (20 October 1988), pp. 740-743. by Dasa S[breve]ali, Mark Bycroft, Alan R. Fersht posted by 1 person RamuAnandakrishnan
	The conserved, buried aspartic acid in oxidized Escherichia coli thioredoxin has a pKa of 7.5. Its titration produces a related shift in global stability [My Copy] Biochemistry, Vol. 30, No. 30. (1 July 1991), pp. 7603-7609. by Knut Langsetmo, James A. Fuchs, Clare Woodward posted by 1 person RamuAnandakrishnan
	Linkage of thioredoxin stability to titration of ionizable groups with perturbed pKa [My Copy] Biochemistry, Vol. 30, No. 30. (1 July 1991), pp. 7609-7614. by Knut Langsetmo, James A. Fuchs, Clare Woodward, Kim A. Sharp posted by 1 person RamuAnandakrishnan
	Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II. [My Copy] Science (New York, N.Y.), Vol. 325, No. 5940. (31 July 2009), pp. 626-628. by Courtney Hodges, Lacramioara Bintu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante posted by 10 people sebastien_vigneau Koch_Lab skoch3 emptyhb jbhiatt pkner absterga leliavski TRHvidsten RamuAnandakrishnan
	CLEAN: CLustering Enrichment ANalysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 July 2009), 234. by Johannes Freudenberg, Vineet Joshi, Zhen Hu, Mario Medvedovic posted by 10 people zufar brianb nuin rdiaz dswan guhjy frohike RamuAnandakrishnan barriot renatomilani
	Molecular dynamics simulation exploration of cooperative migration mechanism of calcium ions in sarcoplasmic reticulum Ca<SUP><FONT SIZE='-1'>2+</FONT></SUP>-ATPase [My Copy] Journal of Computational Chemistry, Vol. 30, No. 13. (2009), pp. 2136-2145. by Yongqi Huang, Huifang Li, Yuxiang Bu posted by 1 person RamuAnandakrishnan
	The conserved, buried aspartic acid in oxidized Escherichia coli thioredoxin has a pKa of 7.5. Its titration produces a related shift in global stability. [My Copy] Biochemistry, Vol. 30, No. 30. (30 July 1991), pp. 7603-7609. by K. Langsetmo, J. A. Fuchs, C. Woodward posted by 1 person RamuAnandakrishnan
	Protein folding roller coaster, one molecule at a time [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 11823-11824. by Eugene Shakhnovich posted by 2 people RamuAnandakrishnan paulschlesinger
	How to obtain statistically converged MM/GBSA results [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Samuel Genheden, Ulf Ryde posted by 5 people pmung McCammon barry sobolevnrm RamuAnandakrishnan
	Error statistics of hidden Markov model and hidden Boltzmann model results [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 212. by Lee Newberg posted by 3 people rdiaz erexhepa RamuAnandakrishnan
	Kinking Occurs during Molecular Dynamics Simulations of Small DNA Minicircles [My Copy] Vol. 14, No. 10. (1 October 2006), pp. 1527-1534. by Filip Lankaa, Richard Lavery, John H. Maddocks posted by 1 person RamuAnandakrishnan
	An <I>N</I> log <I>N</I> approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Ramu Anandakrishnan, Alexey V. Onufriev posted by 2 people sobolevnrm RamuAnandakrishnan
	Fourier transform convolution integrals applied to generalized Born molecular volume [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Thierry Schüpbach, Vincent Zoete, Brice Tsakam-Sotché, Olivier Michielin posted by 1 person RamuAnandakrishnan
	Molecular determinants of the p<I>K</I><SUB><FONT SIZE='-1'>a</FONT></SUB> values of Asp and Glu residues in staphylococcal nuclease [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Carlos A. Castañeda, Carolyn A. Fitch, Ananya Majumdar, Victor Khangulov, Jamie L. Schlessman, Bertrand E. García-Moreno posted by 3 people flbarroso RamuAnandakrishnan sobolevnrm
	Algorithmic design of self-assembling structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 24. (16 June 2009), pp. 9570-9575. by Henry Cohn, Abhinav Kumar posted by 3 people Scis0000002 RamuAnandakrishnan mstumpf
	Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (12 June 2009), e1000413. by Yu Xia, Eric A. Franzosa, Mark B. Gerstein posted by 10 people aprasad chica biomcgary gjuggler Journal picks kiekyon michaelbarton djkt RamuAnandakrishnan bpcusack
	Converging concepts of protein folding in vitro and in vivo [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 6. (03 June 2009), pp. 574-581. by F. Ulrich Hartl, Manajit Hayer-Hartl posted by 7 people bratwurst skywalkerus02 siggi84 scampos melo_mcr reyez RamuAnandakrishnan
	Assessment of biomolecular force fields for molecular dynamics simulations in a protein crystal [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Zhongqiao Hu, Jianwen Jiang posted by 1 person RamuAnandakrishnan
	Energetic coupling between DNA bending and base pair opening [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 19. (October 1988), pp. 7231-7235. by J. Ramstein, R. Lavery posted by 1 person RamuAnandakrishnan
	pH-Dependent Mechanism of Nitric Oxide Release in Nitrophorins 2 and 4 [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 4. (29 January 2009), pp. 1192-1201. by Jason M. Swails, Yilin Meng, Ann F. Walker, Marcelo A. Marti, Dario A. Estrin, Adrian E. Roitberg posted by 1 person RamuAnandakrishnan
	Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Weitao Sun, Jing He posted by 3 people Orengo Group Journal Picks AliC RamuAnandakrishnan
	Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 5. (19 April 2009), pp. 534-540. by Maarten Kruithof, Fan-Tso Chien, Andrew Routh, Colin Logie, Daniela Rhodes, John van Noort posted by 2 people ramalldf RamuAnandakrishnan
	Dynamic folding pathway models of the villin headpiece subdomain (HP-36) structure [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by In-Ho Lee, Seung-Yeon Kim, Jooyoung Lee posted by 1 person RamuAnandakrishnan
	Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity [My Copy] Journal of Computational Chemistry, Vol. 30, No. 11. (27 August 2009), pp. 1654-1663. by Payel Das, Jingyuan Li, Ajay K. Royyuru, Ruhong Zhou posted by 4 people RamuAnandakrishnan oceanwind idoerg zwang
	The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages [My Copy] Proceedings of the National Academy of Sciences (7 April 2009) by Yuri I. Wolf, Pavel S. Novichkov, Georgy P. Karev, Eugene V. Koonin, David J. Lipman posted by 6 people RamuAnandakrishnan deanmalmgren jjray gjuggler FAB-lab rvosa
	Assignment of polar states for protein amino acid residues using an interaction cluster decomposition algorithm and its application to high resolution protein structure modeling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 4. (2007), pp. 824-837. by Xin Li, Matthew P. Jacobson, Kai Zhu, Suwen Zhao, Richard A. Friesner posted by 1 person RamuAnandakrishnan
	Automated site preparation in physics-based rescoring of receptor ligand complexes. [My Copy] Proteins, Vol. 77, No. 1. (October 2009), pp. 52-61. by Chaya S. Rapp, Cheryl Schonbrun, Matthew P. Jacobson, Chakrapani Kalyanaraman, Niu Huang posted by 5 people oteri klexa McCammon jmccammon RamuAnandakrishnan
	Unorthodox uses of Bennett's acceptance ratio method [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Gerhard König, Stefan Bruckner, Stefan Boresch posted by 3 people ssomani agrossfield RamuAnandakrishnan
	Linear response theory in dihedral angle space for protein structural change upon ligand binding [My Copy] Journal of Computational Chemistry, Vol. 30, No. 16. (2009), pp. 2602-2608. by Satoshi Omori, Sotaro Fuchigami, Mitsunori Ikeguchi, Akinori Kidera posted by 4 people barry baker-group sobolevnrm RamuAnandakrishnan
	Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations [My Copy] Journal of Computational Physics, Vol. 225, No. 1. (01 July 2007), pp. 1-5. by R. Skeel, D. Hardy, J. Phillips posted by 2 people RamuAnandakrishnan dmitry_s_yershov
	CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation [My Copy] Journal of Computational Biology, Vol. 16, No. 4. (2009), pp. 523-537. by David Dynerman, Erick Butzlaff, Julie C. Mitchell posted by 3 people baker-group sobolevnrm RamuAnandakrishnan
	ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble [My Copy] BMC Bioinformatics, Vol. 10 (08 April 2009), 104. by Jorge, Javier Sancho posted by 2 people biehl RamuAnandakrishnan
	Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach [My Copy] Journal of Computational Chemistry, Vol. 30, No. 14. (2009), pp. 2351-2357. by Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger posted by 2 people ihaque RamuAnandakrishnan
	Accelerating Density Functional Calculations with Graphics Processing Unit [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 8. (1 August 2008), pp. 1230-1236. by Koji Yasuda posted by 1 person RamuAnandakrishnan
	Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 2. (1 February 2008), pp. 222-231. by Ivan S. Ufimtsev, Todd J. Martinez posted by 2 people ihaque RamuAnandakrishnan
	Graphical Processing Units for Quantum Chemistry [My Copy] Computing in Science and Engineering In Computing in Science & Engineering, Vol. 10, No. 6. (2008), pp. 26-34. by Ivan S. Ufimtsev, Todd J. Martínez posted by 2 people mmeteo RamuAnandakrishnan
	Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 4. (14 April 2009), pp. 1004-1015. by Ivan S. Ufimtsev, Todd J. Martinez posted by 3 people Fortran charris5 RamuAnandakrishnan
	Optimizing Energy Potential for Protein Fold Recognition with Parametric Evaluation Function [My Copy] Journal of Computational Biology, Vol. 16, No. 3. (2009), pp. 427-442. by Junfeng Gu, Honglin Li, Hualiang Jiang, Xicheng Wang posted by 1 person RamuAnandakrishnan