raylim's Top Recommendations

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	Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs [My Copy] Bioinformatics, Vol. 16, No. 7. (1 July 2000), pp. 583-605. by Elena Rivas, Sean R. Eddy posted by 19 people rb_india homonecloco NicholasErho thegoose2 C. elegans / WormBase tharris evaf marcius eckart_bindewald eweaver andersbj arcticrasta mtagaya dquest Eonwe ilh microRNA BioinfoCIPF SGU-CIPF
	Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics. [My Copy] J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 19-30. by S. Washietl, I. L. Hofacker posted by 5 people dayjm arcticrasta Eonwe ilh elfar
	Alignment of RNA base pairing probability matrices [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2222-2227. by Ivo L. Hofacker, Stephan H. F. Bernhart, Peter F. Stadler posted by 5 people parnell ereehuis arcticrasta ilh reyez
	RNA folding at elementary step resolution. [My Copy] RNA, Vol. 6, No. 3. (March 2000), pp. 325-338. by C. Flamm, W. Fontana, I. L. Hofacker, P. Schuster posted by 5 people austin arcticrasta ilh mtw Kiarostami
	Complete suboptimal folding of RNA and the stability of secondary structures. [My Copy] Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165. by S. Wuchty, W. Fontana, I. L. Hofacker, P. Schuster posted by 9 people rb_india heliopais alessandroparini marcius eckart_bindewald arcticrasta ilh BioinfoCIPF SGU-CIPF
	Thermodynamics of RNA-RNA Binding. [My Copy] Bioinformatics (29 January 2006) by Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H H. Bernhart, Peter F F. Stadler, Ivo L L. Hofacker posted by 11 people rb_india marcius eckart_bindewald andersbj arcticrasta ilh mtw physics microRNA BioinfoCIPF SGU-CIPF
	MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3352-3359. by S. Siebert, R. Backofen posted by 5 people marcius arcticrasta ilh BioinfoCIPF SGU-CIPF
	A benchmark of multiple sequence alignment programs upon structural RNAs [My Copy] Nucleic Acids Research In Nucl. Acids Res., Vol. 33, No. 8. (28 April 2005), pp. 2433-2439. by Paul P. Gardner, Andreas Wilm, Stefan Washietl posted by 4 people parnell BioNica arcticrasta ilh
	Vienna RNA secondary structure server [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3429-3431. by Ivo L. Hofacker posted by 14 people stharward ellarond heliopais evaf dayjm eckart_bindewald balicea arcticrasta mtagaya dquest ilh onufriev maralena reyez
	Structured RNAs in the ENCODE selected regions of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 852-864. by Stefan Washietl, Jakob S. Pedersen, Jan O. Korbel, et al.Claudia Stocsits, Andreas R. Gruber, Jorg Hackermuller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E. Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R. Gingeras, Roderic Guigo, Michael Snyder, Mark B. Gerstein, Alexandre Reymond, Ivo L. Hofacker, Peter F. Stadler posted by 5 people NicholasErho zanexu ilh ghattem Bioinformatics
	Fast Folding and Comparison of RNA Secondary Structures [My Copy] Monatsh.\ Chem., Vol. 125 (1994), pp. 167-188. by Ivo L. Hofacker, Walter Fontana, Peter F. Stadler, Sebastian L. Bonhoeffer, Manfred Tacker, Peter Schuster posted by 6 people NicholasErho gzm55 stanley ilh mtw guxiyou
	From sequences to shapes and back: a case study in RNA secondary structures. [My Copy] Proc R Soc Lond B Biol Sci, Vol. 255, No. 1344. (22 March 1994), pp. 279-284. by P. Schuster, W. Fontana, P. F. Stadler, I. L. Hofacker posted by 7 people NicholasErho evaf marcius ilh mtw BioinfoCIPF SGU-CIPF
	Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction. [My Copy] BMC Bioinformatics, Vol. 5 (5 August 2004) by K. J. Doshi, J. J. Cannone, C. W. Cobaugh, R. R. Gutell posted by 4 people heliopais ellarond eckart_bindewald arcticrasta
	Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19. (11 May 2004), pp. 7287-7292. by David H. Mathews, Matthew D. Disney, Jessica L. Childs, Susan J. Schroeder, Michael Zuker, Douglas H. Turner posted by 8 people haarcuba ellarond eckart_bindewald arcticrasta condon Hosna beta austin
	Beyond Mfold: recent advances in RNA bioinformatics. [My Copy] Journal of biotechnology, Vol. 124, No. 1. (25 June 2006), pp. 41-55. by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich posted by 25 people tonamswish heliopais daforerog danaiancu rb_india ellarond GustavoLacerda hrogers marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe cthachuk stajich physics microRNA beta BioinfoCIPF SGU-CIPF reyez
	ddbRNA: detection of conserved secondary structures in multiple alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 13. (1 September 2003), pp. 1606-1611. by D. di Bernardo, T. Down, T. Hubbard posted by 6 people timhubbard eckart_bindewald arcticrasta bsmagic Bioinformatics bioinplant
	How RNA folds. [My Copy] J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281. by I. Tinoco, C. Bustamante posted by 14 people rb_india eskay dayjm marcius eckart_bindewald perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
	HotKnots: Heuristic prediction of RNA secondary structures including pseudoknots [My Copy] RNA, Vol. 11, No. 10. (October 2005), pp. 1494-1504. by Jihong Ren, Baharak Rastegari, A. N. N. E. Condon, Holger H. Hoos posted by 13 people haarcuba rb_india gzm55 marcius eckart_bindewald arcticrasta condon Hosna jarasch beta BioinfoCIPF SGU-CIPF guxiyou
	RNA secondary structure prediction based on free energy and phylogenetic analysis. [My Copy] J Mol Biol, Vol. 289, No. 4. (18 June 1999), pp. 935-947. by V. Juan, C. Wilson posted by 2 people eckart_bindewald arcticrasta
	Analysis of RNA motifs. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 300-308. by N. B. Leontis, E. Westhof posted by 6 people marcius eckart_bindewald arcticrasta debatebob BioinfoCIPF SGU-CIPF
	A bayesian statistical algorithm for RNA secondary structure prediction. [My Copy] Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 387-400. by Y. Ding, C. E. Lawrence posted by 7 people marcius eckart_bindewald arcticrasta condon beta BioinfoCIPF SGU-CIPF
	Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. [My Copy] BMC bioinformatics, Vol. 5 (4 August 2004) by Jens Reeder, Robert Giegerich posted by 12 people haarcuba rb_india gzm55 guxiyou marcius eckart_bindewald arcticrasta condon Hosna beta BioinfoCIPF SGU-CIPF
	A comparative method for finding and folding RNA secondary structures within protein-coding regions. [My Copy] Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4925-4936. by J. S. Pedersen, I. M. Meyer, R. Forsberg, P. Simmonds, J. Hein posted by 2 people eckart_bindewald arcticrasta
	Prediction of mammalian microRNA targets. [My Copy] Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798. by B. P. Lewis, I. H. Shih, M. W. Jones-Rhoades, D. P. Bartel, C. B. Burge posted by 11 people giovenko jfr maryee eckart_bindewald mortenlindow kt arcticrasta mtagaya akiezun Bioinformatics microRNA
	Human MicroRNA Targets [My Copy] PLoS Biol, Vol. 2, No. 11. (5 October 2004), e363. by Bino John, Anton J. Enright, Alexei Aravin, Thomas Tuschl, Chris Sander, Debora S. Marks posted by 16 people frohike daforerog jfr eckart_bindewald tardigrade mortenlindow dsm arcticrasta mtagaya ealloza wulanw microRNA BioinfoCIPF heliopais jdiezperezj Alexander_Kanitz
	Predicting a set of minimal free energy RNA secondary structures common to two sequences. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2246-2253. by D. H. Mathews posted by 7 people rb_india marcius eckart_bindewald arcticrasta BioinfoCIPF SGU-CIPF austin
	Predicting RNA structure using mutual information. [My Copy] Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59. by E. Freyhult, V. Moulton, P. Gardner posted by 7 people evaf marcius eckart_bindewald eweaver arcticrasta BioinfoCIPF SGU-CIPF
	Non\|[ndash]\|coding RNA genes and the modern RNA world [My Copy] Nature Reviews Genetics, Vol. 2, No. 12. (01 December 2001), pp. 919-929. by Sean R. Eddy posted by 9 people GeeSharpMinor heliopais reyez evaf eckart_bindewald arcticrasta bsmagic Bioinformatics bioinplant
	Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency [My Copy] RNA, Vol. 11, No. 5. (1 May 2005), pp. 578-591. by Peter Clote, Fabrizio Ferre, Evangelos Kranakis, Danny Krizanc posted by 6 people NicholasErho marcius arcticrasta BioinfoCIPF SGU-CIPF elfar
	A computational approach to identify genes for functional RNAs in genomic sequences [My Copy] Nucl. Acids Res., Vol. 29, No. 19. (1 October 2001), pp. 3928-3938. by Richard J. Carter, Inna Dubchak, Stephen R. Holbrook posted by 7 people NicholasErho marcius arcticrasta mtagaya BioinfoCIPF SGU-CIPF kallberg
	Computational genomics of noncoding RNA genes. [My Copy] Cell, Vol. 109, No. 2. (19 April 2002), pp. 137-140. by S. R. Eddy posted by 7 people NicholasErho antonkratz myrtilus marcius arcticrasta BioinfoCIPF SGU-CIPF
	The equilibrium partition function and base pair binding probabilities for RNA secondary structure. [My Copy] Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119. by J. S. McCaskill posted by 13 people NicholasErho saunders rb_india ellarond evaf marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	A dynamic programming algorithm for RNA structure prediction including pseudoknots1☆ [My Copy] Journal of Molecular Biology, Vol. 285, No. 5. (05 February 1999), pp. 2053-2068. by Elena Rivas, Sean R. Eddy posted by 15 people rb_india NicholasErho gzm55 mjoach evaf balajis eckart_bindewald arcticrasta dquest condon Hosna jarasch physics beta guxiyou
	Computational identification of noncoding RNAs in E. coli by comparative genomics. [My Copy] Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373. by E. Rivas, R. J. Klein, T. A. Jones, S. R. Eddy posted by 12 people NicholasErho myrtilus evaf marcius eckart_bindewald arcticrasta dquest bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Noncoding RNA gene detection using comparative sequence analysis [My Copy] BMC Bioinformatics, Vol. 2, No. 1. (2001), 8. by Elena Rivas, Sean Eddy posted by 11 people stharward NicholasErho balaji myrtilus evaf marcius eckart_bindewald arcticrasta jarasch BioinfoCIPF SGU-CIPF
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic acids research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted by 14 people rb_india NicholasErho saunders agrobledo gzm55 heliopais evaf marcius arcticrasta mtagaya Hosna BioinfoCIPF SGU-CIPF guxiyou
	Considerations in the identification of functional RNA structural elements in genomic alignments [My Copy] BMC Bioinformatics, Vol. 8 (30 January 2007), 33. by Tomas Babak, Benjamin J. Blencowe, Timothy R. Hughes posted by 4 people NicholasErho eckart_bindewald andersbj microRNA
	RNA structural motifs: building blocks of a modular biomolecule. [My Copy] Q Rev Biophys, Vol. 38, No. 3. (August 2005), pp. 221-243. by D. K. Hendrix, S. E. Brenner, S. R. Holbrook posted by 8 people NicholasErho nikkiwithers svozil marcius eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
	The building blocks and motifs of RNA architecture. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 279-287. by N. B. Leontis, A. Lescoute, E. Westhof posted by 6 people NicholasErho marcius eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
	Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (27 March 2006) by Andrew V. Uzilov, Joshua M. Keegan, David H. Mathews posted by 8 people rb_india NicholasErho thomaskf marcius alexg eckart_bindewald BioinfoCIPF SGU-CIPF
	No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. [My Copy] Nucleic Acids Res, Vol. 27, No. 24. (15 December 1999), pp. 4816-4822. by C. Workman, A. Krogh posted by 3 people NicholasErho eckart_bindewald mtagaya
	RNA folding and unfolding. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379. by B. Onoa, I. Tinoco posted by 11 people rb_india evaf marcius arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF
	Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315. by A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert posted by 10 people evaf austin marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	Prediction of RNA secondary structure by energy minimization. [My Copy] Methods Mol Biol, Vol. 25 (1994), pp. 267-294. by M. Zuker posted by 2 people evaf arcticrasta
	Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. [My Copy] Nucleic Acids Res, Vol. 32, No. 14. (2004), pp. 4281-4296. by P. Schattner, W. A. Decatur, C. A. Davis, M. Ares, M. J. Fournier, T. M. Lowe posted by 3 people evaf arcticrasta mtagaya
	An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots [My Copy] Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 58-66. by Jianhua Ruan, Gary D. Stormo, Weixiong Zhang posted by 6 people heliopais evaf arcticrasta condon Hosna beta
	SRPDB: Signal Recognition Particle Database. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 363-364. by M. A. Rosenblad, J. Gorodkin, B. Knudsen, C. Zwieb, T. Samuelsson posted by 2 people evaf arcticrasta
	Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization. [My Copy] RNA, Vol. 10, No. 8. (August 2004), pp. 1178-1190. by D. H. Mathews posted by 7 people evaf arcticrasta condon Hosna Kiarostami beta austin
	Dynalign: an algorithm for finding the secondary structure common to two RNA sequences. [My Copy] Journal of molecular biology, Vol. 317, No. 2. (22 March 2002), pp. 191-203. by David H. Mathews, Douglas H. Turner posted by 3 people parnell evaf arcticrasta
	RNA pseudoknot prediction in energy-based models. [My Copy] J Comput Biol, Vol. 7, No. 3-4. (2000), pp. 409-427. by R. B. Lyngsø, C. N. Pedersen posted by 7 people gzm55 evaf arcticrasta condon Hosna beta guxiyou
	Finding the most significant common sequence and structure motifs in a set of RNA sequences. [My Copy] Nucleic acids research, Vol. 25, No. 18. (15 September 1997), pp. 3724-3732. by J. Gorodkin, L. J. Heyer, G. D. Stormo posted by 2 people evaf arcticrasta
	Discovering common stem-loop motifs in unaligned RNA sequences. [My Copy] Nucleic Acids Res, Vol. 29, No. 10. (15 May 2001), pp. 2135-2144. by J. Gorodkin, S. L. Stricklin, G. D. Stormo posted by 2 people evaf arcticrasta
	Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. [My Copy] J Mol Biol, Vol. 313, No. 5. (9 November 2001), pp. 1003-1011. by D. Gautheret, A. Lambert posted by 2 people evaf arcticrasta
	A comprehensive comparison of comparative RNA structure prediction approaches. [My Copy] BMC bioinformatics, Vol. 5, No. 1. (30 September 2004) by Paul P. Gardner, Robert Giegerich posted by 15 people parnell rb_india agrobledo heliopais evaf austin marcius andersbj arcticrasta penka Hosna Carnegie microRNA BioinfoCIPF SGU-CIPF
	Noncoding RNA genes. [My Copy] Curr Opin Genet Dev, Vol. 9, No. 6. (December 1999), pp. 695-699. by S. R. Eddy posted by 10 people rb_india evaf marcius arcticrasta mtagaya cmm FAB-lab BioinfoCIPF SGU-CIPF blobbybirdman
	An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots. [My Copy] J Comput Chem, Vol. 25, No. 10. (30 July 2004), pp. 1295-1304. by R. M. Dirks, N. A. Pierce posted by 3 people evaf arcticrasta miyake
	The distribution of RNA motifs in natural sequences. [My Copy] Nucleic Acids Res, Vol. 27, No. 22. (15 November 1999), pp. 4457-4467. by V. Bourdeau, G. Ferbeyre, M. Pageau, B. Paquin, R. Cedergren posted by 3 people evaf arcticrasta emidio_capriotti
	Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2911-2917. by E. Bonnet, J. Wuyts, P. Rouzé, Y. Van de Peer posted by 9 people evaf tardigrade andersbj arcticrasta mtagaya cdawson erbon microRNA GIG
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 87 people claire_jubin danbolser PolymeraseI VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. [My Copy] Nucleic acids research, Vol. 25, No. 5. (1 March 1997), pp. 955-964. by T. M. Lowe, S. R. Eddy posted by 14 people azazello codonusage tfuji danatcaret gdb ziquje evaf arcticrasta dquest vwchan djkt beta dandaman timflutre
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted by 36 people biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica timflutre adijr xingxu biomedical-nlp newton1234 Lombardo_7
	Employment opportunities for non-coding RNAs [My Copy] FEBS Letters, Vol. 567, No. 1. (1 June 2004), pp. 27-34. by C. Morey posted by 6 people GeeSharpMinor LeightonP evaf arcticrasta dortsjennifer ecotoxurbo
	A computational screen for methylation guide snoRNAs in yeast. [My Copy] Science, Vol. 283, No. 5405. (19 February 1999), pp. 1168-1171. by T. M. Lowe, S. R. Eddy posted by 3 people NicholasErho evaf mtagaya
	Thermodynamic stability and statistical significance of potential stem-loop structures situated at the frameshift sites of retroviruses. [My Copy] Nucleic Acids Res, Vol. 17, No. 15. (11 August 1989), pp. 6143-6152. by S. Y. Le, J. H. Chen, J. V. Maizel posted by 2 people NicholasErho evaf
	Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage. [My Copy] Mol Biol Evol, Vol. 2, No. 6. (November 1985), pp. 526-538. by S. F. Altschul, B. W. Erickson posted by 2 people NicholasErho evaf
	Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA [My Copy] Genome Research, Vol. 17, No. 1. (6 January 2007), pp. 117-125. by Eva K. Freyhult, Jonathan P. Bollback, Paul P. Gardner posted by 15 people parnell natstreet druvus jfr eckart_bindewald ppgardne gpalidwor dchughes aswin bjhaugen jayster4 G4ID Genetics-of-Gambling yoanjacquemin evaf
	Modelling 'evo-devo' with RNA. [My Copy] Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177. by W. Fontana posted by 4 people rklancer evaf alexisgallagher eckart_bindewald
	RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences. [My Copy] Nucleic acids research, Vol. 32, No. 10. (2004), pp. 3258-3269. by G. Pavesi, G. Mauri, M. Stefani, G. Pesole posted by 5 people wowalz Glires evaf eckart_bindewald dquest
	Model-based probe set optimization for high-performance microarrays. [My Copy] Nucleic acids research, Vol. 37, No. 3. (22 February 2009), gkn1001. by Germán Gastón G. Leparc, Thomas Tüchler, Gerald Striedner, et al.Karl Bayer, Peter Sykacek, Ivo L. Hofacker, David P. Kreil posted by 5 people guhjy jfr ellakat ilh nuin
	RNAalifold: improved consensus structure prediction for RNA alignments [My Copy] BMC Bioinformatics, Vol. 9 (11 November 2008), 474. by Stephan H. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler posted by 3 people heliopais mhamada ilh
	Invertebrate 7SK snRNAs [My Copy] Journal of Molecular Evolution, Vol. 66, No. 2. (20 February 2008), pp. 107-115. by Andreas Gruber, Dorota Koper-Emde, Manja Marz, et al.Hakim Tafer, Stephan Bernhart, Gregor Obernosterer, Axel Mosig, Ivo Hofacker, Peter Stadler, Bernd-Joachim Benecke posted by 1 person ilh
	Beyond energy minimization: approaches to the kinetic folding of RNA [My Copy] Monatshefte für Chemie / Chemical Monthly by Christoph Flamm, Ivo L. Hofacker posted by 1 person ilh
	Strategies for measuring evolutionary conservation of RNA secondary structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (26 February 2008), 122. by Andreas Gruber, Stephan Bernhart, Ivo Hofacker, Stefan Washietl posted by 6 people roland eckart_bindewald ilh stajich Mycology gresillaud
	Effect of target secondary structure on RNAi efficiency [My Copy] RNA (7 August 2007), rna.546207. by Yu Shao, Chi Y. Chan, Anil Maliyekkel, Charles E. Lawrence, Igor B. Roninson, Ye Ding posted by 5 people puranjoy_b mtagaya Hosna ilh fengqian
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. posted by 35 people balajis bertelsen gderwin polivares JLab Eroslavochka timflutre Bioinformatics pengchy raistrick guhjy cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 EisenLab SorgerLab julianjonker gjuggler drbal maralena ep161302 jasonflannick
	The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures. [My Copy] Nucleic Acids Res (22 April 2007) by Andreas R R. Gruber, Richard Neuböck, Ivo L L. Hofacker, Stefan Washietl posted by 2 people balajis ilh
	Multiple structural alignment and clustering of RNA sequences [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 926-932. by Elfar Torarinsson, Jakob H. Havgaard, Jan Gorodkin posted by 14 people parnell rb_india zanexu Md_2007 marcius eckart_bindewald eweaver ppgardne ilh zwang BioinfoCIPF SGU-CIPF dunnp zhouyu
	Visualization of Barrier Tree Sequences [My Copy] IEEE Transactions on Visualization and Computer Graphics, Vol. 12, No. 5. (September 2006), pp. 781-788. by Christian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler posted by 1 person ilh
	Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation [My Copy] Nucleic Acids Research, Vol. 34, No. 19. (November 2006), pp. 5660-5669. by Shao, Yu, Wu, et al. Yan, Chan, Chi Yu, Mcdonough, Kathleen, Ding, Ye posted by 2 people ilh austin
	Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. [My Copy] Genome Res (5 September 2006) by Eugene Berezikov, Geert van Tetering, Mark Verheul, et al.Jose van de Belt, Linda van Laake, Joost Vos, Robert Verloop, Marc van de Wetering, Victor Guryev, Shuji Takada, Anton Jan van Zonneveld, Hiroyuki Mano, Ronald Plasterk, Edwin Cuppen posted by 8 people galka8_diploma jfr mortenlindow andersbj mtagaya ilh plofje microRNA
	Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (04 September 2006), 400. by Robin Dowell, Sean Eddy posted by 10 people parnell nuin rb_india marcius eckart_bindewald dquest ilh BioinfoCIPF SGU-CIPF reyez
	Automatic detection of conserved base pairing patterns in RNA virus genomes [My Copy] Computers & Chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 401-414. by Ivo L. Hofacker, Peter F. Stadler posted by 1 person ilh
	Evolutionary Methods in Biotechnology : Clever Tricks for Directed Evolution [My Copy] (20 August 2004) by Susanne Brakmann, Andreas Schwienhorst posted by 1 person ilh
	Complex Systems Science in Biomedicine (Topics in Biomedical EngineeringInternational Book Series) [My Copy] (28 February 2006) by T. S. Deisboeck, Y. Kresh posted by 1 person ilh
	Control of mammalian translation by mRNA structure near caps [My Copy] RNA, Vol. 12, No. 5. (1 May 2006), pp. 851-861. by Jeremy R. Babendure, Jennie L. Babendure, Jian-Hua Ding, Roger Y. Tsien posted by 1 person ilh
	Distinguishing protein-coding from non-coding RNAs through support vector machines. [My Copy] PLoS Genet, Vol. 2, No. 4. (April 2006) by J. Liu, J. Gough, B. Rost posted by 4 people ilh bsmagic Bioinformatics bioinplant
	Algorithm independent properties of RNA secondary structure predictions [My Copy] European Biophysics Journal, Vol. 25, No. 2. (December 1996), pp. 115-130. by Manfred Tacker, Peter F. Stadler, Erich G. Bornberg-Bauer, Ivo L. Hofacker, P. Schuster posted by 5 people marcius ilh mtw BioinfoCIPF SGU-CIPF
	Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering [My Copy] Monatshefte fÃ¼r Chemie / Chemical Monthly, Vol. 127, No. 4. (April 1996), pp. 375-389. by W. Grã¼ner, R. Giegerich, D. Strothmann, et al.C. Reidys, J. Weber, I. L. Hofacker, P. F. Stadler, P. Schuster posted by 1 person ilh
	Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks [My Copy] Monatshefte fÃ¼r Chemie / Chemical Monthly, Vol. 127, No. 4. (April 1996), pp. 355-374. by W. Grã¼ner, R. Giegerich, D. Strothmann, et al.C. Reidys, J. Weber, I. L. Hofacker, P. F. Stadler, P. Schuster posted by 1 person ilh
	On the Evolution of Primitive Genetic Codes [My Copy] Origins of Life and Evolution of Biospheres (Formerly Origins of Life and Evolution of the Biosphere), Vol. 33, No. 4 - 5. (October 2003), pp. 491-514. by Gã¼nter Weberndorfer, Ivo L. Hofacker, Peter F. Stadler posted by 1 person ilh
	Concurrent Neutral Evolution of mRNA Secondary Structures and Encoded Proteins [My Copy] Journal of Molecular Evolution, Vol. 50, No. 3. (March 2000), pp. 238-242. by Jaromir Konecny, Michael Schã¶niger, Ivo Hofacker, Marc-Denis Weitze, Ludwig G. Hofacker posted by 1 person ilh
	Combinatorics of RNA secondary structures [My Copy] Discrete Appl. Math., Vol. 88, No. 1-3. (1998), pp. 207-237. by Ivo L. Hofacker, Peter Schuster, Peter F. Stadler posted by 5 people marcius ilh mtw BioinfoCIPF SGU-CIPF
	Interactions in Oligonucleotide Hybrid Duplexes on Microarrays [My Copy] J. Phys. Chem. B, Vol. 108, No. 46. (18 November 2004), pp. 18015-18025. by H. Binder, T. Kirsten, I. L. Hofacker, P. F. Stadler, M. Loeffler posted by 1 person ilh
	Efficient computation of RNA folding dynamics [My Copy] Journal of Physics A: Mathematical and General, Vol. 37, No. 17. (2004), pp. 4731-4741. by Michael T. Wolfinger, Andreas, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler posted by 5 people marcius ilh mtw BioinfoCIPF SGU-CIPF
	Comments on the alpha -peak shapes for relaxation in supercooled liquids [My Copy] Journal of Physics: Condensed Matter, Vol. 3, No. 26. (1991), pp. 5047-5071. by M. Fuchs, W. Gotze, I. Hofacker, A. Latz posted by 1 person ilh
	Automatic detection of conserved base pairing patterns in RNA virus genomes. [My Copy] Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 401-414. by I. L. Hofacker, P. F. Stadler posted by 1 person ilh
	Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force. [My Copy] Fold Des, Vol. 2, No. 5. (1997), pp. 261-269. by A. Babajide, I. L. Hofacker, M. J. Sippl, P. F. Stadler posted by 1 person ilh
	RNA folding and combinatory landscapes. [My Copy] PHYSICAL REVIEW. E. STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS, Vol. 47, No. 3. (March 1993), pp. 2083-2099. by W. Fontana, P. F. Stadler, E. G. Bornberg-Bauer, et al.T. Griesmacher, I. L. Hofacker, M. Tacker, P. Tarazona, E. D. Weinberger, P. Schuster posted by 2 people ilh mtw
	An ESS-analysis for ensembles of prisoner's dilemma strategies. [My Copy] J Theor Biol, Vol. 142, No. 2. (23 January 1990), pp. 189-200. by B. Borstnik, D. Pumpernik, I. L. Hofacker, G. L. Hofacker posted by 1 person ilh
	The hepatitis B virus pregenome: prediction of RNA structure and implications for the emergence of deletions. [My Copy] Intervirology, Vol. 43, No. 3. (2000), pp. 154-164. by K. Kidd-Ljunggren, M. Zuker, I. L. Hofacker, A. H. Kidd posted by 1 person ilh