Francesco Rao's Top Recommendations

These recommendations were last updated about an hour ago.

	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 81 people artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183. by Yuen Ho, Albrecht Gruhler, Adrian Heilbut, et al.Gary D. Bader, Lynda Moore, Sally-Lin L. Adams, Anna Millar, Paul Taylor, Keiryn Bennett, Kelly Boutilier, Lingyun Yang, Cheryl Wolting, Ian Donaldson, Søren Schandorff, Juanita Shewnarane, Mai Vo, Joanne Taggart, Marilyn Goudreault, Brenda Muskat, Cris Alfarano, Danielle Dewar, Zhen Lin, Katerina Michalickova, Andrew R. Willems, Holly Sassi, Peter A. Nielsen, Karina J. Rasmussen, Jens R. Andersen, Lene E. Johansen, Lykke H. Hansen, Hans Jespersen, Alexandre Podtelejnikov, Eva Nielsen, Janne Crawford, Vibeke Poulsen, Birgitte D. Sørensen, Jesper Matthiesen, Ronald C. Hendrickson, Frank Gleeson, Tony Pawson, Michael F. Moran, Daniel Durocher, Matthias Mann, Christopher W. Hogue, Daniel Figeys, Mike Tyers posted by 17 people lpfernandes SarahW lawraga semin okarsligil bicko shivaram lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab iris_2001
	Functional organization of the yeast proteome by systematic analysis of protein complexes [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147. by Anne-Claude Gavin, Markus Bosche, Roland Krause, et al.Paola Grandi, Martina Marzioch, Andreas Bauer, Jorg Schultz, Jens M. Rick, Anne-Marie Michon, Cristina-Maria Cruciat, Marita Remor, Christian Hofert, Malgorzata Schelder, Miro Brajenovic, Heinz Ruffner, Alejandro Merino, Karin Klein, Manuela Hudak, David Dickson, Tatjana Rudi, Volker Gnau, Angela Bauch, Sonja Bastuck, Bettina Huhse, Christina Leutwein, Marie-Anne Heurtier, Richard R. Copley, Angela Edelmann, Erich Querfurth, Vladimir Rybin, Gerard Drewes, Manfred Raida, Tewis Bouwmeester, Peer Bork, Bertrand Seraphin, Bernhard Kuster, Gitte Neubauer, Giulio Superti-Furga posted by 26 people carlk chica lawraga semin cerca taenneken adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq kdl steinmetzlab iris_2001 csanford frohike ethkim
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 25 people colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Computational methods for the prediction of protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 368-373. by A. Valencia, F. Pazos posted by 5 people bicko Robinder chad_davis eckart_bindewald marti
	Coevolution of gene expression among interacting proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 24. (15 June 2004), pp. 9033-9038. by H. B. Fraser, A. E. Hirsh, D. P. Wall, M. B. Eisen posted by 13 people qluo jimineep adamnellis Robinder stevanspringer lfriedl dayjm radek cmm Garamonfok kdl FAB-lab pradiptaray
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted by 26 people ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes structural_bioinformatics kdl cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket
	Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (26 April 2006), 7. by Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka posted by 6 people carlk saket lfriedl chad_davis kdl AbnerCYH
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted by 35 people mpotamias Paccanaro Lab paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq kdl EBI-regulation BioinfoCIPF SGU-CIPF Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim
	BIND: the Biomolecular Interaction Network Database. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 248-250. by Gary D. Bader, Doron Betel, Christopher W. Hogue posted by 12 people bertelsen web03 viktor21614 okarsligil lfriedl chad_davis dullhunk gurkanbebek kdl Bioinformatics dragonrez bicko
	Statistical analysis of domains in interacting protein pairs [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001. by M. W. Nye, Berzuini Carlo, R. Gilks, Babu M. Madan, A. Teichmann posted by 7 people lfriedl chad_davis wnpx neils iris_2001 kdl phoenixzxl
	MIPS: analysis and annotation of proteins from whole genomes. [My Copy] Nucleic Acids Res, Vol. 32 Database issue (1 January 2004) by H. W. Mewes, C. Amid, R. Arnold, et al.D. Frishman, U. Güldener, G. Mannhaupt, M. Münsterkötter, P. Pagel, N. Strack, V. Stümpflen, J. Warfsmann, A. Ruepp posted by 6 people medic0747 irenas lfriedl chad_davis dbk-lab kdl
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted by 12 people snow_dragon carlk lawraga winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
	MIPS: a database for genomes and protein sequences. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 31-34. by H. W. Mewes, D. Frishman, U. Güldener, et al.G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Münsterkötter, S. Rudd, B. Weil posted by 8 people cerca lawraga Borelli irenas chad_davis dgruiz dbk-lab dylanwalker
	Genomic expression programs in the response of yeast cells to environmental changes. [My Copy] Molecular biology of the cell, Vol. 11, No. 12. (December 2000), pp. 4241-4257. by A. P. Gasch, P. T. Spellman, C. M. Kao, et al.O. Carmel-Harel, M. B. Eisen, G. Storz, D. Botstein, P. O. Brown posted by 12 people jdoconnell lawraga kristallreiner koller jbsaltz lfriedl lesander raiyar kdl steinmetzlab roys tvdbulck
	A map of the interactome network of the metazoan C. elegans. [My Copy] Science (New York, N.Y.), Vol. 303, No. 5657. (23 January 2004), pp. 540-543. by S. Li, C. M. Armstrong, N. Bertin, et al.H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, S. Van Den Heuvel, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, M. Vidal posted by 17 people mgomes Scis0000002 lawraga thegoose2 semin cerca C. elegans / WormBase tharris shivaram lfriedl nuke2005 lyongu sesejun Chue kdl carlk ksiek
	Analyzing yeast protein-protein interaction data obtained from different sources [My Copy] Nat Biotech, Vol. 20, No. 10. (October 2002), pp. 991-997. by Gary D. Bader, Christopher W. Hogue posted by 10 people lawraga csanford dragonrez lfriedl balajis wnpx dgront iris_2001 karfunkel kdl
	Gaining confidence in high-throughput protein interaction networks. [My Copy] Nature biotechnology, Vol. 22, No. 1. (January 2004), pp. 78-85. by Joel S. Bader, Amitabha Chaudhuri, Jonathan M. Rothberg, John Chant posted by 18 people carlk chica anf dakelley lawraga wenhui ocs dragonrez lfriedl gurkanbebek raiyar cjeans iris_2001 patrycjam patrycja_missiuro kdl Evangelia ellakat
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted by 28 people schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang carlk RobMills streptomyces dbk-lab kdl Bioinformatics Diego_Prada marcio
	Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins. [My Copy] BMC genomics, Vol. 4, No. 1. (27 November 2003) by M. Kollmar, G. Glöckner posted by 1 person Robinder
	Molecular characterization and immunolocalization of Dictyostelium discoideum protein phosphatase 2A [My Copy] FEBS Letters, Vol. 456, No. 1. (30 July 1999), pp. 7-12. by M. Murphy posted by 1 person Robinder
	Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts [My Copy] Bioinformatics, Vol. 18, No. 4. (1 April 2002), pp. 585-596. by Dov Greenbaum, Ronald Jansen, Mark Gerstein posted by 1 person Robinder
	Protein Interaction Verification and Functional Annotation by Integrated Analysis of Genome-Scale Data [My Copy] Molecular Cell, Vol. 9, No. 5. (May 2002), pp. 1133-1143. by Patrick Kemmeren, Nynke L. van Berkum, Jaak Vilo, et al.Theo Bijma, Rogier Donders, Alvis Brazma, Frank C. Holstege posted by 3 people phoenixzxl nedwards Robinder
	Co-evolutionary Analysis Reveals Insights into Protein–Protein Interactions [My Copy] Journal of Molecular Biology, Vol. 324, No. 1. (15 November 2002), pp. 177-192. by C. Goh posted by 1 person Robinder
	An improved method for identifying functionally linked proteins using phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007) by Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini posted by 3 people mingzhi Robinder Pao-Yang
	In silico two-hybrid system for the selection of physically interacting protein pairs [My Copy] Proteins: Structure, Function, and Genetics, Vol. 47, No. 2. (2002), pp. 219-227. by Florencio Pazos, Alfonso Valencia posted by 4 people dfdong qluo Robinder tale
	Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome. [My Copy] Journal of molecular biology, Vol. 352, No. 4. (30 September 2005), pp. 1002-1015. by Florencio Pazos, Juan A. Ranea, David Juan, Michael J. Sternberg posted by 6 people jperkins chica biomcgary Robinder balajis cjeans
	Relating whole-genome expression data with protein-protein interactions. [My Copy] Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46. by R. Jansen, D. Greenbaum, M. Gerstein posted by 11 people saket Robinder gurkanbebek gespim grahamc cjeans iris_2001 kintoki paolomarcatili nedwards carlk
	Similarity of phylogenetic trees as indicator of protein-protein interaction [My Copy] Protein Eng., Vol. 14, No. 9. (1 September 2001), pp. 609-614. by Florencio Pazos, Alfonso Valencia posted by 9 people jperkins Robinder marti balajis IbnBio tale selrac ca3295 bicko
	Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes [My Copy] PLoS Comput Biol, Vol. 1, No. 1. (24 June 2005), e3. by Daniel Barker, Mark Pagel posted by 12 people jperkins biomcgary iSEEM skembel Robinder rw294 balajis maryee arunyan bartleby pradiptaray rvosa
	Co-evolution of proteins with their interaction partners1 [My Copy] Journal of Molecular Biology, Vol. 299, No. 2. (02 June 2000), pp. 283-293. by Chern-Sing Goh, Andrew A. Bogan, Marcin Joachimiak, Dirk Walther, Fred E. Cohen posted by 7 people jperkins stharward chica druvus Robinder opheliav cjeans
	An evolutionary and structural characterization of mammalian protein complex organization. [My Copy] BMC genomics, Vol. 9, No. 1. (23 December 2008) by Philip Wong, Sonja Althammer, Andrea Hildebrand, et al.Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J. Theis, Andreas Ruepp, Dmitrij Frishman posted by 4 people chica zwang phoenixzxl chad_davis
	Malleable machines in transcription regulation: the mediator complex. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by A. Tóth-Petróczy, C. J. Oldfield, I. Simon, et al.Y. Takagi, A. K. Dunker, V. N. Uversky, M. Fuxreiter posted by 3 people siebert akraemer chad_davis
	Association rate constants of ras-effector interactions are evolutionarily conserved. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by C. Kiel, D. Aydin, L. Serrano posted by 3 people barry ras chad_davis
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted by 14 people pimmy swtimmer dimka mhamada reyez treangen markusd j3xucite nuin kshameer druvus chad_davis taguchi pansapiens
	The self-assembly and evolution of homomeric protein complexes [My Copy] (22 Nov 2008) by Gabriel Villar, Alex W. Wilber, Alex J. Williamson, et al.Parvinder Thiara, Jonathan P. K. Doye, Ard A. Louis, Mara N. Jochum, Anna C. F. Lewis, Emmanuel D. Levy posted by 1 person chad_davis
	Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys. [My Copy] BMC structural biology, Vol. 8 (08 December 2008), 53. by Dan M. Bolser, Ioannis Filippis, Henning Stehr, Jose Duarte, Michael Lappe posted by 4 people tcschen RamuAnandakrishnan krapnik chad_davis
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted by 8 people wangbo dakelley biomcgary cabbagesofdoom chad_davis grahamc bpcusack tmmurali
	ProtorP: A Protein-Protein Interaction Analysis Server [My Copy] Bioinformatics (11 November 2008), btn584. by Christopher Reynolds, David Damerell, Susan Jones posted by 9 people idoerg bicko barry chad_davis behindtherabbit neils structural_bioinformatics kshameer hugowill
	Learning to Select Features using their Properties [My Copy] Journal of Machine Learning Research, Vol. 9 (October 2008), pp. 2349-2376. by Eyal Krupka, Amir Navot, Naftali Tishby posted by 4 people shpigi sdvillal jjrodriguez chad_davis
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted by 21 people pansapiens kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack microbiology_nijmegen Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted by 36 people guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer Bioinformatics svozil mmartin jfr MarcoAlvarez baker-group sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi VisionLab kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted by 222 people gbouma welliegirl Dentistry suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner Zotero en español jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 Journal picks jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 Health_Informatics jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 Herramientas20 dmaweb bhengeveld jpgrolle wsumthai daforerog Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org INK-SSCI-SCI quianominorleo tux2000 cogs eLearning in Leicester AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn mgh-lcs carlblesius NaCTeM Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley MEHTRadiology dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen Département Hypermédia - Master NET esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz JLab BergmanLab cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag McCammon barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris Poverty Alleviation from Access to Knowledge jago druvus emayorga GeeSharpMinor fgibson structural_bioinformatics chad_davis Roswell Cancer Crosstalk Zephyrus leonardo dullhunk
	3did Update: domain-domain and peptide-mediated interactions of known 3D structure. [My Copy] Nucleic acids research (25 October 2008) by Amelie Stein, Alejandro Panjkovich, Patrick Aloy posted by 1 person chad_davis
	DBGET/LinkDB: an integrated database retrieval system. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1998), pp. 683-694. by W. Fujibuchi, S. Goto, H. Migimatsu, et al.I. Uchiyama, A. Ogiwara, Y. Akiyama, M. Kanehisa posted by 2 people Cortel chad_davis
	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted by 17 people carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc Bioinformatics behindtherabbit kgutwin biehl
	MODBASE, a database of annotated comparative protein structure models and associated resources. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (23 January 2009) by Ursula Pieper, Narayanan Eswar, Ben M. Webb, et al.David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Marti-Renom, Fred P. Davis, Andrej Sali posted by 4 people tjimenez noraziz medic0747 chad_davis
	Organization of Physical Interactomes as Uncovered by Network Schemas [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000203. by Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh posted by 5 people sivaramanb roys marck grahamc chad_davis
	PEDANT covers all complete RefSeq genomes. [My Copy] Nucleic acids research (21 October 2008) by Mathias C C. Walter, Thomas Rattei, Roland Arnold, et al.Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner W. Mewes, Dmitrij Frishman posted by 2 people guhjy chad_davis
	Targeting and tinkering with interaction networks [My Copy] Nature Chemical Biology, Vol. 4, No. 11. (20 October 2008), pp. 666-673. by Robert B. Russell, Patrick Aloy posted by 5 people Orengo Group Journal Picks lees jperkins zwang chad_davis
	The Protein Feature Ontology: a tool for the unification of protein feature annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2767-2772. by G. A. Reeves, K. Eilbeck, M. Magrane, et al.C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. Hubbard, H. Hermjakob, J. M. Thornton posted by 15 people timhubbard TRHvidsten idoerg nlapalu fgibson zimbo1 barriot guhjy grahamc chad_davis Roswell Cancer Crosstalk Zephyrus MuraLab i000 dullhunk
	A comparison of MSA tools. [My Copy] Bioinformation, Vol. 2, No. 10. (2008), pp. 452-455. by N. Essoussi, K. Boujenfa, M. Limam posted by 2 people jwm chad_davis
	An integrative approach for predicting interactions of protein regions. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by Sven-Eric E. Schelhorn, Thomas Lengauer, Mario Albrecht posted by 2 people kgutwin chad_davis
	Large-scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis. [My Copy] Arthritis and rheumatism, Vol. 54, No. 11. (November 2006), pp. 3533-3544. by T. Aigner, K. Fundel, J. Saas, et al.P. M. Gebhard, J. Haag, T. Weiss, A. Zien, F. Obermayr, R. Zimmer, E. Bartnik posted by 1 person chad_davis
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, et al.Pedro Romero, Jack Y. Yang, Jessica Walton W. Chen, Vladimir Vacic, Zoran Obradovic, Vladimir N. Uversky posted by 7 people kiekyon niallhaslam robfsouza carlosjavierna guhjy higueruelo chad_davis
	HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets. [My Copy] Proteins, Vol. 69, No. 4. (1 December 2007), pp. 726-733. by S. J. de Vries, A. D. van Dijk, M. Krzeminski, et al.M. van Dijk, A. Thureau, V. Hsu, T. Wassenaar, A. M. Bonvin posted by 2 people chad_davis martainn
	Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Guillaume Launay, Thomas Simonson posted by 2 people lptolik chad_davis
	Optimal contact map alignment of protein-protein interfaces. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328. by V. Pulim, B. Berger, J. Bienkowska posted by 2 people i000 chad_davis
	Interactome data and databases: different types of protein interaction. [My Copy] Comparative and functional genomics, Vol. 5, No. 2. (2004), pp. 173-178. by J. De Las Rivas, A. de Luis posted by 1 person chad_davis
	Moonlighting proteins. [My Copy] Trends in biochemical sciences, Vol. 24, No. 1. (January 1999), pp. 8-11. by C. J. Jeffery posted by 3 people druvus dullhunk chad_davis
	Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000151. by Raja Mazumder, Sona Vasudevan posted by 12 people i000 pengchy raik chad_davis zwang druvus reyez mdstobbe structural_bioinformatics Bioinformatics barry jameswasmuth
	Modifying the DPClus algorithm for identifying protein complexes based on new topological structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen posted by 3 people diamantis chad_davis neils
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert Jansen, Remo Suppi posted by 28 people Zephyrus daveGerrard sotacam cassj walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy shikin robertlischke chrisamiller BergmanLab cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot
	Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000174. by Robert Riley, Matteo Pellegrini, David Eisenberg posted by 3 people robfsouza chad_davis Ema
	United we stand: combining structural methods [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Nathan P. Cowieson, Bostjan Kobe, Jennifer L. Martin posted by 3 people dgront chad_davis paulschlesinger
	The C1C2: a framework for simultaneous model selection and assessment. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Martin Eklund, Ola Spjuth, Jarl Es E. Wikberg posted by 3 people guhjy nuin chad_davis
	Improved network-based identification of protein orthologs. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by N. Yosef, R. Sharan, W. S. Noble posted by 2 people chad_davis grahamc
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted by 8 people chad_davis jfr guhjy zwang barriot druvus zimbo1 grahamc
	MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders. [My Copy] Bioinformatics (Oxford, England) (12 August 2008) by Edward Wijaya, Siu-Ming M. Yiu, Ngo Thanh T. Son, Rajaraman Kanagasabai, Wing-Kin K. Sung posted by 6 people wowalz druvus nuin chad_davis maximilianh idonaldson
	DAPID: a 3D-domain annotated protein-protein interaction database. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215. by Y. C. Chen, H. C. Chen, J. M. Yang posted by 2 people bicko chad_davis
	PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433. by Z. Aung, S. H. Tan, S. K. Ng, K. L. Tan posted by 2 people bicko chad_davis
	HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by Naoshi Fukuhara, Takeshi Kawabata posted by 3 people bicko guhjy chad_davis
	Understanding and Predicting Protein Assemblies With 3D Structures. [My Copy] Comparative and functional genomics, Vol. 4, No. 4. (2003), pp. 410-415. by P. Aloy, R. B. Russell posted by 1 person chad_davis
	Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. [My Copy] Journal of molecular biology, Vol. 248, No. 2. (28 April 1995), pp. 478-486. by G. Schreiber, A. R. Fersht posted by 2 people chad_davis bicko
	Memory-efficient dynamic programming backtrace and pairwise local sequence alignment. [My Copy] Bioinformatics (Oxford, England) (17 June 2008) by Lee A A. Newberg posted by 5 people ilyashl GustavoLacerda chad_davis stajich nuin
	Protein Complex Evolution Does Not Involve Extensive Network Rewiring [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000132. by Teunis J. van Dam, Berend Snel posted by 5 people zufar noraziz phoenixzxl cabbagesofdoom chad_davis
	APID: Agile Protein Interaction DataAnalyzer. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by C. Prieto, J. De Las Rivas posted by 2 people chad_davis satre
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted by 5 people carlk saket zwang guhjy chad_davis
	A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification [My Copy] BMC Bioinformatics, Vol. 9 (22 July 2008), 319. by Alexander Statnikov, Lily Wang, Constantin F. Aliferis posted by 6 people ucbcjbm rdiaz jfr rmk mdharsee chad_davis
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted by 7 people pansapiens HawkinsJohnC tjimenez reyez massivemayhem chad_davis Evangelia
	Peptide-mediated interactions in biological systems: new discoveries and applications. [My Copy] Current opinion in biotechnology (1 July 2008) by Evangelia Petsalaki, Robert B B. Russell posted by 3 people zdai jteyra chad_davis
	The social network of a cell: Recent advances in interactome mapping. [My Copy] Biotechnology annual review, Vol. 14 (2008), pp. 1-28. by S. Charbonnier, O. Gallego, A. C. Gavin posted by 1 person chad_davis
	Tubulin and FtsZ structures: functional and therapeutic implications. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 20, No. 7. (July 1998), pp. 523-527. by A. Desai, T. J. Mitchison posted by 1 person chad_davis
	Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 1. (9 January 1996), pp. 519-523. by H. P. Erickson, D. W. Taylor, K. A. Taylor, D. Bramhill posted by 1 person chad_davis
	Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins. [My Copy] Journal of molecular biology (7 June 2008) by Qifang Xu, Adrian A A. Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland L L. Dunbrack posted by 5 people robfsouza svozil kintoki bicko chad_davis
	POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14. by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch posted by 3 people babakap chad_davis papamicd
	Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49. by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial posted by 6 people chad_davis isimpson druvus nklee sconlan nuin
	Designing succinct structural alphabets [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i182-189. by Shuai C. Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li posted by 2 people chad_davis marck
	Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. [My Copy] International journal of biological macromolecules (21 May 2008) by Petras J J. Kundrotas, Marc F F. Lensink, Emil Alexov posted by 2 people chad_davis structural_bioinformatics
	Using indirect protein-protein interactions for protein complex prediction. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 435-466. by H. N. Chua, K. Ning, W. K. Sung, H. W. Leong, L. Wong posted by 1 person chad_davis
	Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. [My Copy] Bioinformatics (Oxford, England) (25 June 2008) by Liam J J. McGuffin posted by 1 person chad_davis
	Simple fold composition and modular architecture of the nuclear pore complex. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 7. (14 February 2006), pp. 2172-2177. by D. Devos, S. Dokudovskaya, R. Williams, et al.F. Alber, N. Eswar, B. T. Chait, M. P. Rout, A. Sali posted by 1 person chad_davis
	From the first protein structures to our current knowledge of protein folding: delights and scepticisms [My Copy] Nature Reviews Molecular Cell Biology, Vol. 9, No. 8. (25 June 2008), pp. 650-654. by Alan R. Fersht posted by 6 people dfdong aalibes dullhunk paulschlesinger chad_davis melting
	Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions [My Copy] Bioinformatics (12 June 2008), btn286. by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham posted by 5 people colmryan svozil zwang chad_davis grahamc
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1262-1265. by E. D. Levy, E. Boeri Erba, C. V. Robinson, S. A. Teichmann posted by 13 people robfsouza chica KeatingJClub noraziz chad_davis psique marck paulschlesinger neils jwm zwang faion phoenixzxl
	Reconstruction of protein backbones from the BriX collection of canonical protein fragments. [My Copy] PLoS computational biology, Vol. 4, No. 5. (May 2008) by L. Baeten, J. Reumers, V. Tur, et al.F. Stricher, T. Lenaerts, L. Serrano, F. Rousseau, J. Schymkowitz posted by 1 person chad_davis
	Progress and challenges in protein structure prediction [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Y. Zhang posted by 12 people saunders ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb kgutwin chad_davis barry phoenixzxl marck zwang
	Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Juliette Martin, Leslie Regad, Catherine Etchebest, Anne-Claude Camproux posted by 1 person chad_davis
	Role of intrinsic disorder in transient interactions of hub proteins. [My Copy] Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765. by G. P. Singh, M. Ganapathi, D. Dash posted by 2 people agustinarce chad_davis
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by O. Redfern, B. Dessailly, C. Orengo posted by 9 people yylin Orengo Group Journal Picks bdessailly robfsouza guhjy paulschlesinger marck chad_davis janasont