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	Towards a proteome-scale map of the human protein-protein interaction network [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1173-1178. by Jean-Francois Rual, Kavitha Venkatesan, Tong Hao, et al.Tomoko Hirozane-Kishikawa, Amelie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S. Goldberg, Lan V. Zhang, Sharyl L. Wong, Giovanni Franklin, Siming Li, Joanna S. Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S. Sikorski, Jean Vandenhaute, Huda Y. Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E. Cusick, David E. Hill, Frederick P. Roth, Marc Vidal posted by 25 people frohike yaredo Complex Networks fesousa aelef dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Bioinformatics Evangelia csanford ksiek
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted by 18 people myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller frohike kdl Bioinformatics carlk
	Discovering molecular pathways from protein interaction and gene expression data [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i264-272. by E. Segal, H. Wang, D. Koller posted by 9 people yaredo jfr lfriedl wnpx noano bhaddow edwardmorrissey kdl jiny
	A network-based analysis of systemic inflammation in humans [My Copy] Nature, Vol. 437, No. 7061. (13 October 2005), pp. 1032-1037. by Steve E. Calvano, Wenzhong Xiao, Daniel R. Richards, et al.Ramon M. Felciano, Henry V. Baker, Raymond J. Cho, Richard O. Chen, Bernard H. Brownstein, J. Perren Cobb, S. Kevin Tschoeke, Carol Miller-Graziano, Lyle L. Moldawer, Michael N. Mindrinos, Ronald W. Davis, Ronald G. Tompkins, Stephen F. Lowry, Large Scale Collab posted by 15 people yaredo textoris tuck VCKALIA nknii juliajumeau maryee lhonigberg noano grahamc massivemayhem karfunkel TCR_Signaling beapen guhjy
	Automated multidimensional phenotypic profiling using large public microarray repositories. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12323-12328. by Min Xu, Wenyuan Li, Gareth M. James, Michael R. Mehan, Xianghong Jasmine J. Zhou posted by 9 people zufar tmmurali giovanni Borelli rdiaz guhjy TRHvidsten yaredo ptrobajo
	WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W329-334. by Daniel Glez-Pena, Gonzalo Gomez-Lopez, David G. Pisano, Florentino Fdez-Riverola posted by 6 people burak frohike yaredo daforerog renatomilani guhjy
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 52 people bsamal icecrown natstreet provero psique darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted by 14 people frohike rschulz isimpson yaredo ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani dragonrez tmmurali ptrobajo
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-László Barabási posted by 52 people tomhebbron icecrown frohike robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest Network Analysis of Genes Regulated in Renal Diseases daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab shoshin ic4 generif_paper shikin nolodie GomezLab mingzhi carlk yaredo
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted by 19 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Graph-based methods for analysing networks in cell biology. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (1 September 2006), pp. 243-255. by Tero Aittokallio, Benno Schwikowski posted by 15 people frohike daforerog abhishek_tiwari svozil ajbattle cswinburne yaredo barry tmmurali aswin grahamc jmarcelino structural_bioinformatics Bioinformatics iris_2001
	Discovering statistically significant pathways in expression profiling studies. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549. by Lu Tian, Steven A. Greenberg, Sek Won W. Kong, Josiah Altschuler, Isaac S. Kohane, Peter J. Park posted by 15 people bertelsen zufar yaredo VGreiff daforerog ipark-kaist dragonrez maryee ealloza frohike justescaped BioinfoCIPF srp33 giovenko heliopais
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted by 55 people GustavoLacerda jmstat mysickova buyske bertelsen Jporci gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet Bioinformatics BioinfoCIPF GeschwindLab Indigene heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH
	The model organism as a system: integrating 'omics' data sets [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 3. (01 March 2006), pp. 198-210. by Andrew R. Joyce, Bernhard O. Palsson posted by 17 people frohike allysonlister TRHvidsten Scis0000002 zufar dansullivanblk guhjy yaredo balajis wnpx dgront mmt lh1 vietanh0 maburkitt lylu csanford
	A Gene-Expression Signature as a Predictor of Survival in Breast Cancer [My Copy] N Engl J Med, Vol. 347, No. 25. (19 December 2002), pp. 1999-2009. by Marc J. van de Vijver, Yudong D. He, Laura J. van 't Veer, et al.Hongyue Dai, Augustinus A. M. Hart, Dorien W. Voskuil, George J. Schreiber, Johannes L. Peterse, Chris Roberts, Matthew J. Marton, Mark Parrish, Douwe Atsma, Anke Witteveen, Annuska Glas, Leonie Delahaye, Tony van der Velde, Harry Bartelink, Sjoerd Rodenhuis, Emiel T. Rutgers, Stephen H. Friend, Rene Bernards posted by 17 people tonamswish laral csimmons yaredo fesousa lwaldron windman83 winterschlaefer jfr tuck adelgiglio giovanni frohike Ao_Li2007 lyndon macavity1g GeschwindLab
	Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. [My Copy] Lancet, Vol. 365, No. 9460. (5 2005), pp. 671-679. by Yixin Wang, Jan G. Klijn, Yi Zhang, et al.Anieta M. Sieuwerts, Maxime P. Look, Fei Yang, Dmitri Talantov, Mieke Timmermans, Marion E. Meijer-van Gelder, Jack Yu, Tim Jatkoe, Els M. Berns, David Atkins, John A. Foekens posted by 15 people tonamswish yaredo lwaldron provero windman83 laral jfr tuck giovanni frohike cberry Bioinformatics GeschwindLab giovenko winterschlaefer
	Decomposing gene expression into cellular processes. [My Copy] Pac Symp Biocomput (2003), pp. 89-100. by E. Segal, A. Battle, D. Koller posted by 3 people wnpx noano frohike
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted by 17 people frohike kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris wnpx noano koller ccr cdppublications CDP AlexanderPico carlk jago
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted by 46 people frohike mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT dandaman vietanh0 ep161302 nuin Stew
	Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. [My Copy] Pac Symp Biocomput (2001), pp. 422-433. by A. J. Hartemink, D. K. Gifford, T. S. Jaakkola, R. A. Young posted by 4 people frohike brl wnpx noano
	Combining location and expression data for principled discovery of genetic regulatory network models. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 437-449. by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted by 7 people stharward brl ldfu wnpx noano frohike naegele
	Computational systems biology. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210. by Hiroaki Kitano posted by 33 people dadiamah schwartzjmc jporternj tom4m3 schmidtm jaimie nedwards dansullivanblk Jarman Lab ggallone daforerog reyez frohike irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc dbk-lab TCR_Signaling SysbioMPI-TCells livingthing maburkitt shikin GeneGo
	How to infer gene networks from expression profiles [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted by 45 people jmstat sarikamehra frohike Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli Jarman Lab ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet EBI-regulation Plantandetc heliopais mariakmejia tmmurali
	QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. [My Copy] Nucleic acids research, Vol. 37, No. 15. (1 August 2009), e101. by Guojun Li, Qin Ma, Haibao Tang, Andrew H. Paterson, Ying Xu posted by 9 people marti Orengo Group Journal Picks davidalee meanerelk rdiaz gbloeb fpattyn tmmurali yaredo
	A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome [My Copy] Vol. 122, No. 6. (23 September 2005), pp. 957-968. by Ulrich Stelzl, Uwe Worm, Maciej Lalowski, et al.Christian Haenig, Felix H. Brembeck, Heike Goehler, Martin Stroedicke, Martina Zenkner, Anke Schoenherr, Susanne Koeppen, Jan Timm, Sascha Mintzlaff, Claudia Abraham, Nicole Bock, Silvia Kietzmann, Astrid Goedde, Engin Toksöz, Anja Droege, Sylvia Krobitsch, Bernhard Korn, Walter Birchmeier, Hans Lehrach, Erich E. Wanker posted by 1 person yaredo
	Streptococcus pneumoniae as a genomics platform for broad-spectrum antibiotic discovery. [My Copy] Current opinion in microbiology, Vol. 5, No. 3. (June 2002), pp. 338-342. by J. I. Glass, A. E. Belanger, G. T. Robertson posted by 1 person yaredo
	Immunotherapies in HIV-1 infection. [My Copy] Current opinion in HIV and AIDS, Vol. 4, No. 3. (May 2009), pp. 188-193. by S. L. Pett posted by 1 person yaredo
	Importance of randomization in microarray experimental designs with Illumina platforms. [My Copy] Nucleic acids research, Vol. 37, No. 17. (1 September 2009), pp. 5610-5618. by Ricardo A. Verdugo, Christian F. Deschepper, Gloria Muñoz, Daniel Pomp, Gary A. Churchill posted by 6 people Orengo Group Journal Picks davidalee yaredo rdiaz Bioinformatics - CRUK Stew
	Targeting a host element as a strategy to block HIV replication: is it nice to fool with Mother Nature? [My Copy] Current opinion in HIV and AIDS, Vol. 4, No. 2. (March 2009), pp. 79-81. by M. M. Lederman, J. Este posted by 1 person yaredo
	Pomelo II: finding differentially expressed genes. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W581-586. by E. R. Morrissey, R. Diaz-Uriarte posted by 3 people guhjy daforerog yaredo
	VisHiC--hierarchical functional enrichment analysis of microarray data [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W587-592. by Darya Krushevskaya, Hedi Peterson, Juri Reimand, Meelis Kull, Jaak Vilo posted by 2 people yaredo guhjy
	Global alignment of protein-protein interaction networks by graph matching methods [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i259-1267. by Mikhail Zaslavskiy, Francis Bach, Jean-Philippe Vert posted by 1 person yaredo
	TORQUE: topology-free querying of protein interaction networks. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W106-108. by Sharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan posted by 3 people yaredo guhjy grahamc
	DASMIweb: online integration, analysis and assessment of distributed protein interaction data [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W122-128. by Hagen Blankenburg, Fidel Ramirez, Joachim Buch, Mario Albrecht posted by 4 people yaredo anf guhjy grahamc
	IsoRankN: spectral methods for global alignment of multiple protein networks [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i253-258. by Chung-Shou Liao, Kanghao Lu, Michael Baym, Rohit Singh, Bonnie Berger posted by 2 people yaredo grahamc
	Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1521-1527. by Jia Meng, Shou-Jiang Gao, Yufei Huang posted by 4 people bsamal yaredo greg shikin
	Domain-oriented edge-based alignment of protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i240-1246. by Xin Guo, Alexander J. Hartemink posted by 5 people megraw yaredo guhjy grahamc roys
	KELLER: estimating time-varying interactions between genes [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i128-136. by Le Song, Mladen Kolar, Eric P. Xing posted by 9 people rdiaz arne yaredo leemond31 roys tmmurali Bioinformatics dswan mstumpf
	SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W109-114. by Pablo Minguez, Stefan Gotz, David Montaner, Fatima Al-Shahrour, Joaquin Dopazo posted by 10 people sgoetz guhjy yaredo Scis0000002 kiekyon daforerog renatomilani sjcockell kshameer neils
	PPISearch: a web server for searching homologous protein-protein interactions across multiple species. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W369-375. by C. C. Chen, C. Y. Lin, Y. S. Lo, J. M. Yang posted by 5 people yaredo ParkinsonLab_at_MaRS daforerog guhjy grahamc
	Network Analysis of Differential Expression for the Identification of Disease-Causing Genes [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5526. by Daniela Nitsch, Léon-Charles Tranchevent, Bernard Thienpont, et al.Lieven Thorrez, Hilde Van Esch, Koenraad Devriendt, Yves Moreau posted by 4 people rdiaz yaredo lthorrez trfield
	Bayesian inference of protein-protein interactions from biological literature [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1536-1542. by Rajesh Chowdhary, Jinfeng Zhang, Jun S. Liu posted by 8 people bsamal bertelsen guhjy yaredo sameersoi mstumpf liblab sjcockell
	Cross species analysis of microarray expression data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted by 15 people bsamal jfr roys daveGerrard ptrobajo guhjy yaredo shikin Bioinformatics dswan renatomilani rdiaz thomaskelder natstreet druvus
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted by 5 people jfr yaredo saket tmmurali phoenixzxl
	Whole-genome expression analysis: challenges beyond clustering [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 340-347. by R. Altman posted by 1 person yaredo
	Host-Directed Drug Targeting of Factors Hijacked by Pathogens [My Copy] Sci. Signal., Vol. 1, No. 29. (22 July 2008), re8. by Anita Schwegmann, Frank Brombacher posted by 1 person yaredo
	Why is big Pharma getting out of antibacterial drug discovery? [My Copy] Current Opinion in Microbiology, Vol. 6, No. 5. (October 2003), pp. 427-430. by S Projan, posted by 3 people sandfire gwenknight yaredo
	A probabilistic generative model for GO enrichment analysis [My Copy] Nucl. Acids Res. (1 August 2008), gkn434. by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J. Nau, Ziv Bar-Joseph posted by 11 people jfr guhjy inesdesantiago yaredo rdiaz paszkows barriot waszak tmmurali raiyar jandot
	Network-based prediction of human tissue-specific metabolism [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 9. (17 August 2008), pp. 1003-1010. by Tomer Shlomi, Moran N. Cabili, Markus J. Herrgard, Bernhard O. Palsson, Eytan Ruppin posted by 14 people alhufton phoenixzxl grahamc yaredo Sonix jfr roys mdstobbe klo peterli ptrobajo renatomilani zwang guhjy
	The Synergizer service for translating gene, protein and other biological identifiers [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2272-2273. by Gabriel F. Berriz, Frederick P. Roth posted by 9 people yaredo alyssaporter druvus nuin mitko tmmurali APRegier grahamc guhjy
	Finding new drug targets in the 21st century [My Copy] Drug Discovery Today, Vol. 10, No. 23-24. (December 2005), pp. 1683-1687. by Mark A. Lindsay posted by 1 person yaredo
	Drug target identification: a question of biology. [My Copy] Nature, Vol. 428, No. 6979. (11 March 2004), pp. 225-231. by C. Smith posted by 1 person yaredo
	Drug discovery: selecting the optimal approach [My Copy] Drug Discovery Today, Vol. 11, No. 9-10. (May 2006), pp. 465-472. by Frank Sams-Dodd posted by 1 person yaredo
	Rediscovering the sweet spot in drug discovery [My Copy] Drug Discovery Today, Vol. 8, No. 23. (1 December 2003), pp. 1067-1077. by David Brown, Giulio Superti-Furga posted by 1 person yaredo
	Target-based drug discovery: is something wrong? [My Copy] Drug Discovery Today, Vol. 10, No. 2. (15 January 2005), pp. 139-147. by Frank Sams-Dodd posted by 2 people reyez yaredo
	Functional modules by relating protein interaction networks and gene expression [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 31, No. 21. (1 November 2003), pp. 6283-6289. by Sabine Tornow, H. W. Mewes posted by 5 people yaredo saket bertelsen jiny carlk
	Analyzing time series gene expression data [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2493-2503. by Ziv Bar-Joseph posted by 3 people ocs roys yaredo
	Systems biology and the host response to viral infection [My Copy] Nature Biotechnology, Vol. 25, No. 12., pp. 1383-1389. by Seng-Lai Tan, Gopinath Ganji, Bryan Paeper, Sean Proll, Michael G. Katze posted by 3 people yaredo guhjy tmmurali
	Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 21. (1 November 2007), pp. 2910-2917. by Sangeeta B. English, Atul J. Butte posted by 7 people daforerog yaredo tmmurali jfr nedwards barriot guhjy
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted by 22 people icecrown daveGerrard greg badi ptrobajo tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder GeneGo AlexanderPico
	Human protein–protein interaction networks and the value for drug discovery [My Copy] Drug Discovery Today, Vol. 12, No. 17-18. (September 2007), pp. 709-716. by H. Ruffner, A. Bauer, T. Bouwmeester posted by 3 people guhjy bicko yaredo
	PHIDIAS: a pathogen-host interaction data integration and analysis system [My Copy] Genome Biology, Vol. 8 (30 July 2007), R150. by Zuoshuang Xiang, Yuying Tian, Yongqun He posted by 2 people yaredo carlk
	Network-based analysis of affected biological processes in type 2 diabetes models. [My Copy] PLoS genetics, Vol. 3, No. 6. (1 June 2007), e96. by Manway Liu, Arthur Liberzon, Sek Won W. Kong, et al.Weil R. Lai, Peter J. Park, Isaac S. Kohane, Simon Kasif posted by 5 people yaredo tmmurali jfr ajgentles dragonrez
	Strategy for encoding and comparison of gene expression signatures [My Copy] Genome Biology, Vol. 8 (05 July 2007), R133. by Yajun Yi, Chun Li, Clay Miller, Alfred L. George posted by 3 people yaredo jfr rdiaz
	Edge-based scoring and searching method for identifying condition-responsive protein protein interaction sub-network [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2121-2128. by Zheng Guo, Yongjin Li, Xue Gong, et al.Chen Yao, Wencai Ma, Dong Wang, Yanhui Li, Jing Zhu, Min Zhang, Da Yang, Jing Wang posted by 3 people yaredo grahamc zwang
	Gene Expression Network Analysis, and Applications to Immunology [My Copy] Bioinformatics, Vol. 23, No. 7. (31 January 2007), pp. btm019-858. by Serban Nacu, Rebecca Critchley-Thorne, Peter Lee, Susan Holmes posted by 2 people yaredo heliopais
	CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 215-221. by Xiaotu Ma, Hyunju Lee, Li Wang, Fengzhu Sun posted by 6 people yaredo saket carlk yyby jiny nedwards
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 50. (12 December 2006), pp. 19033-19038. by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted by 9 people mjoach TRHvidsten tmmurali yaredo jfr aswin hmk iris_2001 macavity1g
	Virtual drug discovery and development for neglected diseases through public-private partnerships. [My Copy] Nat Rev Drug Discov, Vol. 2, No. 11. (November 2003), pp. 919-928. by S. Nwaka, R. G. Ridley posted by 5 people cchand yaredo marcius BioinfoCIPF SGU-CIPF
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	Prioritizing Genomic Drug Targets in Pathogens: Application to Mycobacterium tuberculosis [My Copy] PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e61. by Samiul Hasan, Sabine Daugelat, Srinivasa P. S. Rao, Mark Schreiber posted by 4 people yaredo dansullivanblk caporaso biomedical-nlp
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	DrugBank: a comprehensive resource for in silico drug discovery and exploration. [My Copy] Nucleic acids research In Nucl. Acids Res., Vol. 34, No. Database issue. (1 January 2006), pp. D668-672. by David S. Wishart, Craig Knox, An Chi C. Guo, et al.Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey posted by 16 people guhjy antonkratz sm-rush bertelsen wenhui yaredo dansullivanblk kuhn maryee sangeetha madhadron jdiggans massivemayhem Bioinformatics insilicodrug elvinado
	Inferring pathways from gene lists using a literature-derived network of biological relationships. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 788-793. by D. Rajagopalan, P. Agarwal posted by 3 people yaredo yas T_lab
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	Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome [My Copy] Genome Biology, Vol. 6, No. 5. (2005), R40. by Arun Ramani, Razvan Bunescu, Raymond Mooney, Edward Marcotte posted by 25 people Complex Networks fesousa Jarman Lab ggallone yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc kdl Bioinformatics generif_paper
	Lefty antagonism of Squint is essential for normal gastrulation. [My Copy] Curr Biol, Vol. 12, No. 24. (23 December 2002), pp. 2129-2135. by B. Feldman, M. L. Concha, L. Saúde, et al.M. J. Parsons, R. J. Adams, S. W. Wilson, D. L. Stemple posted by 1 person noano
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	Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by N. Nariai, Y. Tamada, S. Imoto, S. Miyano posted by 3 people wnpx noano koller
	Physical network models. [My Copy] J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-262. by C. H. Yeang, T. Ideker, T. Jaakkola posted by 4 people tmmurali wnpx noano koller
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	Computational discovery of transcriptional regulatory rules [My Copy] Bioinformatics In Bioinformatics, Vol. 21, No. suppl_2. (1 September 2005), pp. ii101-107. by Tho H. Pham, Jose C. Clemente, Kenji Satou, Tu B. Ho posted by 2 people bsamal noano
	Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks. [My Copy] Pac Symp Biocomput (2004), pp. 336-347. by N. Nariai, S. Kim, S. Imoto, S. Miyano posted by 3 people wnpx noano Borelli
	Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis. [My Copy] Mol Biol Cell, Vol. 15, No. 2. (February 2004), pp. 532-542. by S. M. O'Rourke, I. Herskowitz posted by 2 people mmcclean noano
	Dissecting asthma using focused transgenic modeling and functional genomics [My Copy] Journal of Allergy and Clinical Immunology, Vol. 116, No. 2. (August 2005), pp. 305-311. by Douglas A. Kuperman, Christina C. Lewis, Prescott G. Woodruff, et al.Madeleine W. Rodriguez, Yee H. Yang, Gregory M. Dolganov, John V. Fahy, David J. Erle posted by 1 person noano
	Genetic variation in human gene expression. [My Copy] Mamm Genome (12 June 2006) by Emmanouil T. Dermitzakis, Barbara E. Stranger posted by 7 people psique dpollard cmm noano djkt EisenLab FAB-lab
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted by 22 people carlk snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz kdl EBI-regulation shikin s041629 GeneGo pmendes mtruksa chasmand
	Regulatory Blueprint for a Chordate Embryo [My Copy] Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187. by Kaoru S. Imai, Michael Levine, Nori Satoh, Yutaka Satou posted by 9 people emilyhare nirfriedman nickluscombe noano EisenLab EBI-regulation dquest Auger Dead 60's
	The value of prior knowledge in discovering motifs with MEME. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 3 (1995), pp. 21-29. by T. L. Bailey, C. Elkan posted by 4 people Mehlhorn wowalz AaronDarling noano
	Predicting gene expression from sequence. [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by M. A. Beer, S. Tavazoie posted by 19 people rsaito thegoose2 TranscriptionalRegulationWithThermodynamicModels winterschlaefer C. elegans / WormBase tharris ana xwbcn adepace nickluscombe noano koller structural_bioinformatics Bioinformatics EisenLab EBI-regulation jrest phoenixzxl klo
	Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits. [My Copy] Hum Mol Genet, Vol. 15, No. 3. (1 February 2006), pp. 481-492. by H. Li, H. Chen, L. Bao, et al.K. F. Manly, E. J. Chesler, L. Lu, J. Wang, M. Zhou, R. W. Williams, Y. Cui posted by 4 people balicea fisherp noano koller
	Gene regulation by microRNAs. [My Copy] Curr Opin Genet Dev (23 February 2006) by Richard W W. Carthew posted by 14 people marcius eckart_bindewald tardigrade rodrigo dchughes mtagaya balabu cdawson noano microRNA BioinfoCIPF SGU-CIPF GIG heliopais
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted by 21 people farhat wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou structural_bioinformatics Bioinformatics EBI-regulation idonaldson yevishere isimpson
	Genomic regulatory networks and animal development. [My Copy] Dev Cell, Vol. 9, No. 4. (October 2005), pp. 449-462. by A. Stathopoulos, M. Levine posted by 5 people roys postrational noano josepe dquest
	The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution. [My Copy] Science (24 November 2005) by Kyle Kai-How K. Farh, Andrew Grimson, Calvin Jan, et al.Benjamin P P. Lewis, Wendy K K. Johnston, Lee P P. Lim, Christopher B B. Burge, David P P. Bartel posted by 20 people daforerog jerlich mfenner aprasad dayjm marcius eckart_bindewald dpollard mortenlindow mtagaya noano lp2 EisenLab microRNA BioinfoCIPF SGU-CIPF heliopais Alexander_Kanitz jfr caseybrown
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted by 27 people shigepong daforerog shikin jimineep Jarman Lab ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards kdl Bioinformatics JJJ athleem