Sébastien Vigneau's Top Recommendations

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	The DNA-encoded nucleosome organization of a eukaryotic genome. [My Copy] Nature, Vol. 458, No. 7236. (19 March 2009), pp. 362-366. by Noam Kaplan, Irene K. Moore, Yvonne Fondufe-Mittendorf, et al.Andrea J. Gossett, Desiree Tillo, Yair Field, Emily M. LeProust, Timothy R. Hughes, Jason D. Lieb, Jonathan Widom, Eran Segal posted by 12 people clearbluespring suizifish inesdesantiago gdb kshundyak absterga rschulz Koch_Lab skoch3 WanderingAengus dchughes maximilianh
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted by 30 people hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez Journal picks qayub fenghezi tonamswish Orengo Group Journal Picks robertrentzsch JLab BergmanLab polivares idonaldson rschulz CTCF Chromatin cvaldes danmaclean
	Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions. [My Copy] Genome research, Vol. 19, No. 8. (19 August 2009), pp. 1374-1383. by Scott V. Dindot, Richard Person, Mark Strivens, Rejinaldo Garcia, Arthur L. Beaudet posted by 4 people inesdesantiago clearbluespring taylor73 rschulz
	Evolutionary Origin and Functions of Retrogene Introns [My Copy] Mol Biol Evol, Vol. 26, No. 9. (1 September 2009), pp. 2147-2156. by Marie Fablet, Manuel Bueno, Lukasz Potrzebowski, Henrik Kaessmann posted by 5 people inesdesantiago operon dchughes rschulz clearbluespring
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted by 19 people hzoltan Vincent_Rouilly mfgreen ewilban1 idonaldson guhjy Chinnaiyan Lab mkiyer rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago SIMR bioinformatics malcook BergmanLab polivares Journal picks
	Regulation of DNA methylation activity through Dnmt3L promoter methylation by Dnmt3 enzymes in embryonic development [My Copy] Hum. Mol. Genet., Vol. 17, No. 17. (1 September 2008), pp. 2654-2664. by Ye-Guang Hu, Ryutaro Hirasawa, Jia-Lei Hu, et al.Kenichiro Hata, Chun-Liang Li, Ying Jin, Taiping Chen, En Li, Muriel Rigolet, Evani Viegas-Pequignot, Hiroyuki Sasaki, Guo-Liang Xu posted by 3 people inesdesantiago rschulz clearbluespring
	A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation. [My Copy] Genome research, Vol. 18, No. 8. (16 August 2008), pp. 1224-1237. by Zheng Lian, Alexander Karpikov, Jin Lian, et al.Milind C. Mahajan, Stephen Hartman, Mark Gerstein, Michael Snyder, Sherman M. Weissman posted by 3 people clearbluespring inesdesantiago rschulz
	Retrotransposition as a Source of New Promoters. [My Copy] Mol Biol Evol (25 March 2008) by Kohji Okamura, Kenta Nakai posted by 6 people Glires rschulz cisevol cis-regulatory-evolution clearbluespring inesdesantiago
	Linking cohesin to gene regulation. [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 925-928. by Daniel Peric-Hupkes, Bas van Steensel posted by 5 people clearbluespring diaz0058 inesdesantiago rschulz maralena
	Tandem repeats in the CpG islands of imprinted genes. [My Copy] Genomics, Vol. 88, No. 3. (September 2006), pp. 323-332. by B. Hutter, V. Helms, M. Paulsen posted by 3 people inesdesantiago rschulz clearbluespring
	PcG Proteins, DNA Methylation, and Gene Repression by Chromatin Looping [My Copy] PLoS Biol, Vol. 6, No. 12. (2 December 2008), e306. by Vijay K. Tiwari, Kelly M. Mcgarvey, Julien D. F. Licchesi, et al.Joyce E. Ohm, James G. Herman, Dirk Schübeler, Stephen B. Baylin posted by 6 people gdb suizifish rjlawren inesdesantiago kengg clearbluespring
	Genome-wide approaches to studying chromatin modifications. [My Copy] Nature reviews. Genetics, Vol. 9, No. 3. (March 2008), pp. 179-191. by Dustin E. Schones, Keji Zhao posted by 16 people ewilban1 clearbluespring athma hkuhn geniac epigenetics inesdesantiago tmmurali dchughes vega zwang cabbagezs idonaldson faion bpcusack guhjy
	Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. [My Copy] Nature, Vol. 448, No. 7153. (2 August 2007), pp. 553-560. by Tarjei S. Mikkelsen, Manching Ku, David B. Jaffe, et al.Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung K. Kim, Richard P. Koche, William Lee, Eric Mendenhall, Aisling O'Donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S. Lander, Bradley E. Bernstein posted by 21 people hkuhn RyuOgawa stubrown ewilban1 tonamswish gdb guhjy brant dchughes vega kengg vplagnol olympos epigenetics bioyang cabbagezs EisenLab rschulz slevy03 jasonflannick inesdesantiago
	Rethinking how DNA methylation patterns are maintained [My Copy] Nature Reviews Genetics, Vol. 10, No. 11. (30 September 2009), pp. 805-811. by Peter A. Jones, Gangning Liang posted by 7 people clearbluespring tonamswish inesdesantiago aprickett dchughes reyez merpublic
	Chromosome crosstalk in three dimensions [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 212-217. by Anita Gondor, Rolf Ohlsson posted by 3 people clearbluespring inesdesantiago djkt
	Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11667-11672. by Ahmad M. Khalil, Mitchell Guttman, Maite Huarte, et al.Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E. Bernstein, Alexander van Oudenaarden, Aviv Regev, Eric S. Lander, John L. Rinn posted by 9 people jwfoley inesdesantiago xianjun daforerog clearbluespring Oxford Virology wsjames scjparker fenghezi
	Linking DNA methylation and histone modification: patterns and paradigms [My Copy] Nature Reviews Genetics, Vol. 10, No. 5. (01 May 2009), pp. 295-304. by Howard Cedar, Yehudit Bergman posted by 10 people aprickett rdiaz cvaldes inesdesantiago megraw guhjy songpku clearbluespring akundaje fenghezi
	The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome [My Copy] Genome Research (1 January 2009) by Subhajyoti De, Sarah A. Teichmann, Madan M. Babu posted by 13 people natstreet clearbluespring maximilianh djkt alweber jbhiatt xianjun cis-regulatory-evolution cisevol inesdesantiago provero JustinCrocker medic0747
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara E Catenazzi, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong D. Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee Ling Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana Chiva Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie Vandevondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted by 31 people hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics SIMR bioinformatics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt
	The not-so-silent X [My Copy] Nat Genet, Vol. 40, No. 6. (June 2008), pp. 689-690. by Christine M. Disteche posted by 2 people clearbluespring inesdesantiago
	A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells [My Copy] Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88. by M. Guenther, S. Levine, L. Boyer, R. Jaenisch, R. Young posted by 7 people rsaito hkuhn RyuOgawa clearbluespring gderwin margaritis inesdesantiago
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted by 16 people Vincent_Rouilly Bioinformatics tonamswish dswan fenghezi inesdesantiago idonaldson JLab BergmanLab polivares mkiyer druvus Mycology stajich humburg rschulz
	The logic of chromatin architecture and remodelling at promoters. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 193-198. by Bradley R. Cairns posted by 9 people RyuOgawa hagechouchin443 fenghezi cmzmasek TRHvidsten inesdesantiago rschulz humburg djkt
	Global analysis of DNA methylation and transcription of human repetitive sequences. [My Copy] Epigenetics : official journal of the DNA Methylation Society, Vol. 4, No. 5. (17 July 2009), pp. 339-350. by Béatrice Horard, Angéline Eymery, Geneviève Fourel, et al.Nikita Vassetzky, Jacques Puechberty, Gérard Roizes, Kevin Lebrigand, Pascal Barbry, Aurélie Laugraud, Christian Gautier, Elsa Ben B. Simon, Frédéric Devaux, Frédérique Magdinier, Claire Vourc'h, Eric Gilson posted by 3 people inesdesantiago guhjy rschulz
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted by 11 people Bioinformatics - CRUK Stew tonamswish stubrown inesdesantiago ewilban1 guhjy Chinnaiyan Lab mkiyer humburg rschulz
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted by 38 people lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton BergmanLab polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon SIMR bioinformatics ghattem n00c Bioinformatics danmaclean Journal picks ppgardne nuin rschulz natstreet druvus humburg
	Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. [My Copy] Genome research, Vol. 19, No. 4. (April 2009), pp. 521-532. by Melissa J. Fullwood, Chia-Lin L. Wei, Edison T. Liu, Yijun Ruan posted by 21 people hzoltan cthachuk GustavoLacerda jandot inesdesantiago Chinnaiyan Lab mkiyer rschulz guhjy lp2 natstreet druvus absterga coela hpaces orzenil idoerg behindtherabbit nuin djkt jbhiatt
	Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors [My Copy] Molecular Cell, Vol. 30, No. 6. (20 June 2008), pp. 755-766. by Fabio Mohn, Michael Weber, Michael Rebhan, et al.Tim C. Roloff, Jens Richter, Michael B. Stadler, Miriam Bibel, Dirk Schübeler posted by 2 people inesdesantiago rschulz
	Analysis of the platypus genome suggests a transposon origin for mammalian imprinting [My Copy] Genome Biology, Vol. 10 (02 January 2009), R1. by Andrew, Marilyn B. Renfree posted by 7 people djkt inesdesantiago bpcusack epigenetics Imprinting rschulz PaulFlook
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted by 22 people hzoltan stubrown guhjy gdb tonamswish KCL & UCL Bioinformatics ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz SIMR bioinformatics ghattem
	The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5908. (12 December 2008), pp. 1717-1720. by Takashi Nagano, Jennifer A. Mitchell, Lionel A. Sanz, et al.Florian M. Pauler, Anne C. Ferguson-Smith, Robert Feil, Peter Fraser posted by 7 people Annab galka8_diploma coela rjoakey gfliustu inesdesantiago rschulz
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted by 21 people hzoltan torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. [My Copy] Developmental cell, Vol. 15, No. 4. (October 2008), pp. 547-557. by X. Li, M. Ito, F. Zhou, et al.N. Youngson, X. Zuo, P. Leder, A. C. Ferguson-Smith posted by 2 people inesdesantiago rschulz
	Alternative Polyadenylation: A Twist on mRNA 3' End Formation. [My Copy] ACS chemical biology (26 September 2008) by Carol S. Lutz posted by 3 people heliopais inesdesantiago rschulz
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted by 21 people hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish JLab BergmanLab guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad
	Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (30 August 2008), pp. gkn540-5590. by Ju Y. Lee, Zhe Ji, Bin Tian posted by 3 people operon inesdesantiago rschulz
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 40 people heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted by 11 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb caseybrown
	A mono-allelic bivalent chromatin domain controls tissue-specific imprinting at Grb10 [My Copy] The EMBO Journal, Vol. aop, No. current. (24 July 2008) by Lionel A. Sanz, Stormy Chamberlain, Jean-Charles Sabourin, et al.Amandine Henckel, Terry Magnuson, Jean-Philippe Hugnot, Robert Feil, Philippe Arnaud posted by 2 people inesdesantiago rschulz
	Genome-scale DNA methylation maps of pluripotent and differentiated cells [My Copy] Nature, Vol. 454, No. 7205. (06 July 2008), pp. 766-770. by Alexander Meissner, Tarjei S. Mikkelsen, Hongcang Gu, et al.Marius Wernig, Jacob Hanna, Andrey Sivachenko, Xiaolan Zhang, Bradley E. Bernstein, Chad Nusbaum, David B. Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S. Lander posted by 16 people aprickett saravana jmstat mmartin christoffpale guhjy rschulz jernst jfr mrochman gdb jasonflannick inesdesantiago djkt wsjames Oxford Virology
	Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116. by Cassandra R. Farthing, Gabriella Ficz, Ray K. Ng, et al.Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik posted by 6 people rschulz MSchipper Schmidtc djkt inesdesantiago epigenetics
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted by 22 people hzoltan jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 44 people cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	DNA methylation landscapes: provocative insights from epigenomics. [My Copy] Nature reviews. Genetics (8 May 2008) by Miho M M. Suzuki, Adrian Bird posted by 9 people tomhebbron misonneh jfr rschulz bootsy dchughes djkt guhjy inesdesantiago
	Random monoallelic expression: making a choice. [My Copy] Trends in genetics : TIG, Vol. 24, No. 6. (29 June 2008), pp. 257-259. by Christel Krueger, Ian M. Morison posted by 6 people dswan bpcusack rschulz djkt klo inesdesantiago
	A novel CpG island set identifies tissue-specific methylation at developmental gene loci. [My Copy] PLoS Biol, Vol. 6, No. 1. (January 2008) by R. Illingworth, A. Kerr, D. Desousa, et al.H. Jørgensen, P. Ellis, J. Stalker, D. Jackson, C. Clee, R. Plumb, J. Rogers, S. Humphray, T. Cox, C. Langford, A. Bird posted by 3 people inesdesantiago kaarsinogen rschulz
	Epigenetic regulation and the variability of gene expression [My Copy] Nature Genetics, Vol. 40, No. 2. (29 January 2008), pp. 141-147. by Jung K. Choi, Young-Joon Kim posted by 8 people hagechouchin443 Scis0000002 balabu inesdesantiago bootsy epigenetics rschulz maralena
	Effects of molecular memory and bursting on fluctuations in gene expression. [My Copy] Science (New York, N.Y.), Vol. 319, No. 5861. (18 January 2008), pp. 339-343. by Juan M. Pedraza, Johan Paulsson posted by 11 people pmalkus inesdesantiago balicea margaritis cjeans heliopais roys sb_journal_club rschulz ddcttrl klo
	RNA polymerase is poised for activation across the genome. [My Copy] Nature genetics, Vol. 39, No. 12. (11 December 2007), pp. 1507-1511. by Ginger W. Muse, Daniel A. Gilchrist, Sergei Nechaev, et al.Ruchir Shah, Joel S. Parker, Sherry F. Grissom, Julia Zeitlinger, Karen Adelman posted by 7 people inesdesantiago margaritis rschulz skoch3 Koch_Lab caseybrown mikaelhuss
	RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. [My Copy] Nature genetics, Vol. 39, No. 12. (11 December 2007), pp. 1512-1516. by J. Zeitlinger, A. Stark, M. Kellis, et al.J. W. Hong, S. Nechaev, K. Adelman, M. Levine, R. A. Young posted by 7 people ychromosome margaritis Stew rschulz caseybrown mikaelhuss inesdesantiago
	Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts [My Copy] BMC Bioinformatics, Vol. 8 (26 June 2007), 221. by Joern Toedling, Oleg Sklyar, Wolfgang Huber posted by 9 people TheresaNiederberger rschulz guhjy jfr ghattem hpaces caseybrown inesdesantiago bryankr
	Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome [My Copy] Nat Genet, Vol. 39, No. 4. (04 March 2007), pp. 457-466. by Michael Weber, Ines Hellmann, Michael B. Stadler, et al.Liliana Ramos, Svante Paabo, Michael Rebhan, Dirk Schubeler posted by 12 people iris42 gderwin athma inesdesantiago aprickett myrtilus epigenetics bioyang vmsr bpcusack gjuggler rschulz
	A genomic code for nucleosome positioning [My Copy] Nature, Vol. 442, No. 7104. (17 August 2006), pp. 772-778. by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, et al.Annchristine Thastrom, Yair Field, Irene K. Moore, Ji-Ping Z. Wang, Jonathan Widom posted by 30 people TRHvidsten hagechouchin443 natstreet dakelley kentsis aalibes alokm marcius indigoviolet dchughes cconboy neveaire kengg johncumbers joshuashen joepickrell GustavoLacerda Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID BioinfoCIPF SGU-CIPF Plantandetc Genetics-of-Gambling rschulz inesdesantiago sonjadaniela
	Programming of gene expression by Polycomb group proteins [My Copy] Trends in Cell Biology, Vol. 18, No. 5. (May 2008), pp. 236-243. by Claudia Köhler, Corina B. Villar posted by 2 people suizifish inesdesantiago
	Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation [My Copy] Nature Genetics, Vol. 40, No. 6. (18 May 2008), pp. 741-750. by Yutaka Kondo, Lanlan Shen, Alfred S. Cheng, et al.Saira Ahmed, Yanis Boumber, Chantale Charo, Tadanori Yamochi, Takeshi Urano, Koichi Furukawa, Bernard Kwabi-Addo, David L. Gold, Yoshitaka Sekido, Tim H. Huang, Jean-Pierre J. Issa posted by 5 people suizifish oelemento misonneh djkt inesdesantiago
	From The Cover: Epigenetic differences arise during the lifetime of monozygotic twins [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 30. (26 July 2005), pp. 10604-10609. by Mario F. Fraga, Esteban Ballestar, Maria F. Paz, et al.Santiago Ropero, Fernando Setien, Maria L. Ballestar, Damia Heine-Suner, Juan C. Cigudosa, Miguel Urioste, Javier Benitez, Manuel Boix-Chornet, Abel Sanchez-Aguilera, Charlotte Ling, Emma Carlsson, Pernille Poulsen, Allan Vaag, Zarko Stephan, Tim D. Spector, Yue-Zhong Wu, Christoph Plass, Manel Esteller posted by 4 people suizifish misonneh inesdesantiago fridjians32citations
	Genome regulation by polycomb and trithorax proteins. [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 735-745. by Bernd Schuettengruber, Daniel Chourrout, Michel Vervoort, Benjamin Leblanc, Giacomo Cavalli posted by 4 people hkuhn kmbernt suizifish inesdesantiago
	Chromatin Modifications and Their Function [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 693-705. by T. Kouzarides posted by 7 people galka8_diploma gderwin suizifish shazos MSchipper zhlei guhjy
	The mammalian epigenome. [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 669-681. by Bradley E. Bernstein, Alexander Meissner, Eric S. Lander posted by 8 people saravana jmstat galka8_diploma suizifish guhjy slevy03 jasonflannick karfunkel
	Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 813-822. by Ian B. Dodd, Mille A. Micheelsen, Kim Sneppen, Genevieve Thon posted by 6 people bertelsen suizifish inesdesantiago biomcgary Marcotte_Lab jasonflannick
	The epigenomics of cancer. [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 683-692. by Peter A. Jones, Stephen B. Baylin posted by 11 people giovenko suizifish catcremona huiminC misonneh oelemento skoch3 SeungjoonOh cerami Koch_Lab srp33
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. 39, No. 3. (04 February 2007), pp. 311-318. by Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, et al.Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren posted by 15 people tonamswish hagechouchin443 suizifish absterga raylim kengg djkt mgaldzic olympos skoch3 epigenetics CHIP Plantandetc caseybrown inesdesantiago
	THE HISTORY OF CANCER EPIGENETICS [My Copy] Nat Rev Cancer, Vol. 4, No. 2. (February 2004), pp. 143-153. by Andrew P. Feinberg, Benjamin Tycko posted by 3 people suizifish olympos inesdesantiago
	Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation. [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (1 September 2006) by Zhong Wang, Huntington F F. Willard, Sayan Mukherjee, Terrence S S. Furey posted by 3 people suizifish vplagnol inesdesantiago
	Computational prediction of methylation status in human genomic sequences [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 28. (11 July 2006), pp. 10713-10716. by Rajdeep Das, Nevenka Dimitrova, Zhenyu Xuan, et al.Robert A. Rollins, Fatemah Haghighi, John R. Edwards, Jingyue Ju, Timothy H. Bestor, Michael Q. Zhang posted by 5 people iris42 suizifish eckart_bindewald olympos epigenetics
	Genome-wide prediction of imprinted murine genes. [My Copy] Genome Res, Vol. 15, No. 6. (June 2005), pp. 875-884. by P. P. Luedi, A. J. Hartemink, R. L. Jirtle posted by 4 people suizifish stevanspringer FAB-lab inesdesantiago
	Human DNA methylomes at base resolution show widespread epigenomic differences [My Copy] Nature, Vol. 462, No. 7271. (14 October 2009), pp. 315-322. by Ryan Lister, Mattia Pelizzola, Robert H. Dowen, et al.R. David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R. Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Ron Stewart, Victor Ruotti, A. Harvey Millar, James A. Thomson, Bing Ren, Joseph R. Ecker posted by 27 people jessopher malay gdb qayub greg neils megraw mamitamura tonamswish rsaito clearbluespring rschulz RyuOgawa hagechouchin443 devinmhellesen daveGerrard JLab CTCF BergmanLab polivares dswan fenghezi Journal picks colinveal frohike liqbbi ethanmj
	Antisense transcription occurs at the promoter of a mouse imprinted gene, Commd1, on the repressed paternal allele. [My Copy] Journal of biochemistry (17 September 2009) by Keiichiro Joh, Hitomi Yatsuki, Ken Higashimoto, Tsunehiro Mukai, Hidenobu Soejima posted by 2 people rschulz clearbluespring
	KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints [My Copy] Nature, Vol. 461, No. 7262. (02 September 2009), pp. 415-418. by David N. Ciccone, Hui Su, Sarah Hevi, et al.Frederique Gay, Hong Lei, Jeffrey Bajko, Guoliang Xu, En Li, Taiping Chen posted by 2 people clearbluespring rschulz
	Histone methylation is mechanistically linked to DNA methylation at imprinting control regions in mammals [My Copy] Hum. Mol. Genet., Vol. 18, No. 18. (15 September 2009), pp. 3375-3383. by Amandine Henckel, Kazuhiko Nakabayashi, Lionel A. Sanz, Robert Feil, Kenichiro Hata, Philippe Arnaud posted by 4 people clearbluespring aprickett gderwin rschulz
	ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 3. (7 July 2009), pp. 240-248. by Dominic Schmidt, Michael D. Wilson, Christiana Spyrou, Gordon D. Brown, James Hadfield, Duncan T. Odom posted by 9 people samanthacooper fpattyn roys guhjy gdb ewilban1 idonaldson rschulz clearbluespring
	Paternal deletion of Meg1/Grb10 DMR causes maternalization of the Meg1/Grb10 cluster in mouse proximal Chromosome 11 leading to severe pre- and postnatal growth retardation. [My Copy] Human molecular genetics (27 January 2009) by Hirosuke Shiura, Kenji Nakamura, Takafusa Hikichi, et al.Toshiaki Hino, Kanako Oda, Rika Suzuki-Migishima, Takashi Kohda, Tomoko Kaneko-Ishino, Fumitoshi Ishino posted by 3 people clearbluespring rschulz aprickett
	Reciprocally imprinted genes and the response to selection on one sex. [My Copy] Genetics (18 June 2008) by Manus Patten, David Haig posted by 2 people rschulz clearbluespring
	RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by J. F. Lucier, J. Perreault, J. F. Noël, G. Boire, J. P. Perreault posted by 2 people rschulz clearbluespring
	Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes [My Copy] PLoS Biology, Vol. 6, No. 4. (1 April 2008), e80. by Lukasz Potrzebowski, Nicolas Vinckenbosch, Ana C. Marques, Frédéric Chalmel, Bernard Jégou, Henrik Kaessmann posted by 3 people bpcusack rschulz clearbluespring
	The mouse Murr1 gene is imprinted in the adult brain, presumably due to transcriptional interference by the antisense-oriented U2af1-rs1 gene. [My Copy] Mol Cell Biol, Vol. 24, No. 1. (January 2004), pp. 270-279. by Y. Wang, K. Joh, S. Masuko, et al.H. Yatsuki, H. Soejima, A. Nabetani, C. V. Beechey, S. Okinami, T. Mukai posted by 2 people rschulz clearbluespring
	Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta [My Copy] Nature Genetics, Vol. 40, No. 2. (06 January 2008), pp. 243-248. by Yoichi Sekita, Hirotaka Wagatsuma, Kenji Nakamura, et al.Ryuichi Ono, Masayo Kagami, Noriko Wakisaka, Toshiaki Hino, Rika Suzuki-Migishima, Takashi Kohda, Atsuo Ogura, Tsutomu Ogata, Minesuke Yokoyama, Tomoko Kaneko-Ishino, Fumitoshi Ishino posted by 3 people rschulz clearbluespring meiklej
	A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease. [My Copy] Hum Genet, Vol. 117, No. 5. (September 2005), pp. 411-427. by J. M. Chen, P. D. Stenson, D. N. Cooper, C. Férec posted by 3 people aprasad rschulz clearbluespring
	Sexual dimorphism in parental imprint ontogeny and contribution to embryonic development. [My Copy] Mol Cell Endocrinol (29 November 2007) by Déborah Bourc'his, Charlotte Proudhon posted by 2 people rschulz clearbluespring
	Comparative phylogenetic analysis of blcap/nnat reveals eutherian-specific imprinted gene. [My Copy] Mol Biol Evol, Vol. 22, No. 8. (August 2005), pp. 1740-1748. by H. K. Evans, J. R. Weidman, D. O. Cowley, R. L. Jirtle posted by 2 people rschulz clearbluespring
	A mouse gene that coordinates epigenetic controls and transcriptional interference to achieve tissue-specific expression. [My Copy] Mol Cell Biol (12 November 2007) by Alexandra C C. Racanelli, Fiona B B. Turner, Lin-Ying Y. Xie, Shirley M M. Taylor, Richard G G. Moran posted by 2 people rschulz clearbluespring
	Monoallelic expression of nine imprinted genes in the sheep embryo occurs after the blastocyst stage. [My Copy] Reproduction, Vol. 135, No. 1. (January 2008), pp. 29-40. by Alexandra Thurston, Jane Taylor, John Gardner, Kevin D D. Sinclair, Lorraine E E. Young posted by 2 people rschulz clearbluespring
	Origins of New Male Germ-line Functions from X-Derived Autosomal Retrogenes in the Mouse [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2242-2253. by Meng-Shin Shiao, Pavel Khil, R. Daniel Camerini-Otero, et al.Toshihiko Shiroishi, Kazuo Moriwaki, Hon-Tsen Yu, Manyuan Long posted by 4 people operon skumagai rschulz clearbluespring
	Characteristics of imprinted genes. [My Copy] Nat Genet, Vol. 9, No. 1. (January 1995), pp. 12-13. by B. Neumann, P. Kubicka, D. P. Barlow posted by 2 people rschulz clearbluespring
	Conserved features of imprinted differentially methylated domains. [My Copy] Gene, Vol. 399, No. 1. (1 September 2007), pp. 33-45. by A. Paoloni-Giacobino, L. D'Aiuto, M. C. Cirio, B. Reinhart, J. R. Chaillet posted by 2 people rschulz clearbluespring
	Human-specific endogenous retroviruses. [My Copy] ScientificWorldJournal, Vol. 7 (2007), pp. 1848-1868. by A. Buzdin posted by 2 people rschulz clearbluespring
	Comparative analysis of sequence characteristics of imprinted genes in human, mouse, and cattle [My Copy] Mammalian Genome, Vol. 18, No. 6-7. (July 2007), pp. 538-547. by Khatib, Hasan, Zaitoun, Ismail, Kim, Eui-Soo posted by 2 people rschulz clearbluespring
	Allele-specific demethylation at an imprinted mammalian promoter [My Copy] Nucl. Acids Res., Vol. 35, No. 20. (29 November 2007), pp. 7031-7039. by Andrew J. Wood, Deborah Bourc'his, Timothy H. Bestor, Rebecca J. Oakey posted by 4 people bpcusack epigenetics rschulz clearbluespring
	bc10: A novel human bladder cancer-associated protein with a conserved genomic structure downregulated in invasive cancer. [My Copy] Int J Cancer, Vol. 98, No. 4. (1 April 2002), pp. 539-546. by I. Gromova, P. Gromov, J. E. Celis posted by 2 people rschulz clearbluespring
	Neuronatin mRNA: alternatively spliced forms of a novel brain-specific mammalian developmental gene. [My Copy] Brain Res, Vol. 690, No. 1. (28 August 1995), pp. 92-98. by R. Joseph, D. Dou, W. Tsang posted by 3 people rschulz clearbluespring klo
	Imprinted expression of neuronatin from modified BAC transgenes reveals regulation by distinct and distant enhancers. [My Copy] Dev Biol, Vol. 236, No. 2. (15 August 2001), pp. 387-399. by R. M. John, S. A. Aparicio, J. F. Ainscough, et al.K. L. Arney, S. Khosla, K. Hawker, K. J. Hilton, S. C. Barton, M. A. Surani posted by 2 people rschulz clearbluespring
	28-Way vertebrate alignment and conservation track in the UCSC Genome Browser [My Copy] Genome Res. (5 November 2007), gr.6761107. by Webb Miller, Kate Rosenbloom, Ross C. Hardison, et al.Minmei Hou, James Taylor, Brian Raney, Richard Burhans, David C. King, Robert Baertsch, Daniel Blankenberg, Kosakovsky, Anton Nekrutenko, Belinda Giardine, Robert S. Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H. Pringle, William J. Murphy, Arthur Lesk, George M. Weinstock, Kerstin Lindblad-Toh, Richard A. Gibbs, Eric S. Lander, Adam Siepel, David Haussler, James W. Kent posted by 12 people rschulz aprasad dchughes nklee maximilianh idonaldson fpattyn gjuggler clearbluespring joavah AaronDarling guhjy
	A code for transcription initiation in mammalian genomes. [My Copy] Genome research, Vol. 18, No. 1. (21 January 2008), pp. 1-12. by M. C. Frith, E. Valen, A. Krogh, Y. Hayashizaki, P. Carninci, A. Sandelin posted by 13 people megraw guhjy rpatward inesdesantiago myrtilus dchughes cabbagezs maximilianh idonaldson oelemento gjuggler ohara gracio
	Getting started in tiling microarray analysis. [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844. by X. S. Liu posted by 10 people ashishanand inesdesantiago emptyhb cassj jfr cabbagezs waszak yevishere Ayest GeeSharpMinor
	CG dinucleotide clustering is a species-specific property of the genome. [My Copy] Nucleic Acids Res (10 October 2007) by Jacob L L. Glass, Reid F F. Thompson, Batbayar Khulan, et al.Maria E E. Figueroa, Emmanuel N N. Olivier, Erin J J. Oakley, Gary Van Zant, Eric E E. Bouhassira, Ari Melnick, Aaron Golden, Melissa J J. Fazzari, John M M. Greally posted by 4 people inesdesantiago operon cabbagezs fpattyn
	Domain-wide regulation of gene expression in the human genome [My Copy] Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1286-1295. by Hinco J. Gierman, Mireille H. Indemans, Jan Koster, et al.Sandra Goetze, Jurgen Seppen, Dirk Geerts, Roel van Driel, Rogier Versteeg posted by 8 people dchughes djkt cjeans cabbagezs ljs G4ID Genetics-of-Gambling inesdesantiago
	Human gene organization driven by the coordination of replication and transcription [My Copy] Genome Res. (3 August 2007), gr.6533407. by Maxime Huvet, Samuel Nicolay, Marie Touchon, et al.Benjamin Audit, Yves D'aubenton-Carafa, Alain Arneodo, Claude Thermes posted by 8 people polivares inesdesantiago Eroslavochka operon djkt lusk cabbagezs bpcusack
	What is a gene, post-ENCODE? History and updated definition [My Copy] Genome Research, Vol. 17, No. 6. (June 2007), pp. 669-681. by Mark B. Gerstein, Can Bruce, Joel S. Rozowsky, et al.Deyou Zheng, Jiang Du, Jan O. Korbel, Olof Emanuelsson, Zhengdong D. Zhang, Sherman Weissman, Michael Snyder posted by 40 people daveGerrard Yanno inesdesantiago kentz ddcttrl bertelsen tmarscha thegoose2 burak guhjy carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Bioinformatics EisenLab G4ID Genetics-of-Gambling Minty hpaces tharris altotor mjoach
	Mammalian RNA polymerase II core promoters: insights from genome-wide studies. [My Copy] Nature reviews. Genetics, Vol. 8, No. 6. (08 June 2007), pp. 424-436. by Albin Sandelin, Piero Carninci, Boris Lenhard, Jasmina Ponjavic, Yoshihide Hayashizaki, David A. Hume posted by 20 people inesdesantiago isimpson megraw guhjy tonamswish maximilianh siebert rpatward Lauren_Jones agustinarce dchughes xiaobeizhao zwang cabbagezs G4ID Genetics-of-Gambling cisevol cis-regulatory-evolution GeeSharpMinor idonaldson
	Error bars in experimental biology [My Copy] J. Cell Biol., Vol. 177, No. 1. (9 April 2007), pp. 7-11. by Geoff Cumming, Fiona Fidler, David L. Vaux posted by 62 people Jporci pjmaybank inbetweener tt srmblack abhishek_tiwari druvus bangyuzhou schoeband brianb cambray dbikard rec3141 ajaymalik Gorzomagnificent daforerog sen_cheng yangjustinc maximilianh qwermish bayesian ntakano flips inesdesantiago brian ana batallah manduca kuhn Borelli dayjm kristina chad_davis tny dullhunk rabu lechristophe nelmor jdelcampo fishtank emmahe lisa1 Daria_G devender bmaust cabbagezs natstreet winterschlaefer krokicki loopback007 structural_bioinformatics Bioinformatics VisionLab FlowCytometry Microbial-Ecology wilbur tdmckee renatomilani delenca arindrartow guhjy mjoach