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	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted by 46 people ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq Bioinformatics dswan dakelley jasontsai DeNovoAssembly-SIMR acn druvus natstreet nmohelli stajich Mycology farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted by 30 people cthachuk hzoltan seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax BergmanLab polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat Journal picks AlexBateman chrisamiller nuin n00c natstreet sandfire druvus
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted by 27 people cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted by 26 people heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj Bioinformatics dswan torfinnnome rschulz BergmanLab natstreet druvus jasontsai jmeppley SIMR bioinformatics ghattem nuin polivares n00c aprasad Journal picks niallhaslam idoerg
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted by 22 people jfr azazello hzoltan cthachuk GustavoLacerda jasontsai n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten iSEEM djkt Bioinformatics hpaces APRegier pengchy natstreet druvus darian
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted by 29 people jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon BergmanLab polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan Mycology stajich jbhiatt erikarner
	TopHat: discovering splice junctions with RNA-Seq. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted by 28 people juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown BergmanLab polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c SIMR bioinformatics ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted by 22 people hzoltan cthachuk GustavoLacerda jamselem n00c jonilaserson SIMR bioinformatics ghattem nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils
	Next-generation DNA sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted by 51 people burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu Bioinformatics behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Roswell Cancer Crosstalk Zephyrus psique natstreet druvus nuin alexknight reyez dbk Oxford Virology wsjames pengchy GeeSharpMinor
	Next-generation sequencing of vertebrate experimental organisms. [My Copy] Mammalian genome : official journal of the International Mammalian Genome Society, Vol. 20, No. 6. (19 June 2009), pp. 327-338. by Daniel J. Turner, Thomas M. Keane, Ian Sudbery, David J. Adams posted by 8 people n00c jmcq guhjy jasontsai jessopher druvus Journal picks AlexBateman
	The impact of next-generation sequencing technology on genetics [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 133-141. by E. Mardis posted by 27 people rshe jasontsai n00c kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen Green Lab iSEEM cybaer1 giovenko druvus
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted by 24 people hzoltan daveGerrard daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda Journal picks adamjamesreid Bioinformatics dswan mlog LabDros gwallau ewilban1 ThomasDOtto jasontsai BergmanLab polivares natstreet druvus
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted by 20 people torfinnnome hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai Journal picks ThomasDOtto heliopais guhjy JLab BergmanLab cisevol n00c natstreet druvus jbhiatt
	Managing and Analyzing Next-Generation Sequence Data [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted by 47 people burak idoerg Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet BergmanLab polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton Bioinformatics dswan reyez kshameer TRHvidsten djkt Journal picks ppgardne
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted by 19 people torfinnnome hzoltan seb1 maren adijr greg jandot guhjy jonilaserson n00c druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted by 42 people hzoltan operon n00c kinestetika mtagaya iSEEM jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani moernerlab samjlord Bioinformatics - CRUK Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted by 24 people cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown Bioinformatics dswan BergmanLab polivares orzenil natstreet iSEEM djkt jmcq n00c heliopais ppgardne Journal picks druvus
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted by 32 people jfr hzoltan cthachuk GustavoLacerda n00c agbiotec shabhonam pachorip APRegier jmcq stevebs jonilaserson michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson Journal picks ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg
	Fast and accurate short read alignment with Burrows-Wheeler transform [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted by 38 people lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton BergmanLab polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon SIMR bioinformatics ghattem n00c Bioinformatics danmaclean Journal picks ppgardne nuin rschulz natstreet druvus humburg
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted by 16 people hzoltan manduca jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 n00c SIMR bioinformatics ghattem xingxu cajunsushi bandrewfox
	RNA-Seq: a revolutionary tool for transcriptomics. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted by 44 people zufar CUBES hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted by 21 people hzoltan torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara E Catenazzi, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong D. Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee Ling Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana Chiva Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie Vandevondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted by 31 people hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics SIMR bioinformatics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 41 people seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 45 people manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted by 37 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted by 15 people n00c Leaflet heliopais stubrown dakelley fenghezi daed natstreet druvus sitalange qayub gdb Journal picks jasontsai danmaclean
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted by 19 people n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda Mycology stajich
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted by 20 people GustavoLacerda n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley BergmanLab cisevol SIMR bioinformatics malcook Neeperando djkt
	Genome assembly forensics: finding the elusive mis-assembly [My Copy] Genome Biology, Vol. 9, No. 3. (14 March 2008), R55. by Adam Phillippy, Michael Schatz, Mihai Pop posted by 12 people n00c Thaverkamp kiekyon dakelley jasontsai orzenil DeNovoAssembly-SIMR druvus fernan lp2 Neeperando GustavoLacerda
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted by 18 people n00c pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted by 30 people hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp BergmanLab idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl Mycology stajich n00c torfinnnome nuin kshameer neils druvus natstreet
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted by 19 people hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt Journal picks PabloMarin guhjy n00c orzenil natstreet druvus Mycology stajich SIMR bioinformatics malcook
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted by 19 people torfinnnome hzoltan cthachuk orzenil GustavoLacerda APRegier dakelley katholt GeeSharpMinor dayjm djkt Bioinformatics dswan Journal picks pachorip natstreet druvus n00c jmeppley
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted by 19 people darian hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted by 13 people hzoltan GustavoLacerda GeeSharpMinor Bioinformatics jfr n00c dakelley pengchy natstreet Mycology stajich idoerg druvus
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted by 21 people heliopais hzoltan jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares microbiology_nijmegen Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted by 38 people hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin GeneGo psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 Koch_Lab
	Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence [My Copy] Nucleic Acids Research, Vol. 37, No. 7., pp. e52-e52. by Brona Brejova, Tomas Vinar, Yangyi Chen, et al.Shengyue Wang, Guoping Zhao, Daniel G. Brown, Ming Li, Yan Zhou posted by 3 people jasontsai jmcq hpaces
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted by 19 people jwfoley hzoltan heliopais stubrown GustavoLacerda woodson8 ThomasDOtto Mycology stajich guhjy SIMR bioinformatics ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor
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	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted by 16 people rshe n00c fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	Probabilistic base calling of Solexa sequencing data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted by 18 people heliopais orzenil n00c dakelley jfr usagi-kirin magusina SIMR bioinformatics malcook natstreet druvus iris42 abizar caseybrown reyez pengchy waszak nuin
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted by 12 people djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson Mycology stajich druvus neils
	Parametric complexity of sequence assembly: theory and applications to next generation sequencing. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 7. (July 2009), pp. 897-908. by Niranjan Nagarajan, Mihai Pop posted by 4 people n00c dakelley sitalange nuin
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted by 32 people ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome Journal picks jandot pkonings danmaclean daforerog frohike rschulz gangcai
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted by 8 people woodson8 scmelton torfinnnome dakelley n00c rdiaz jbhiatt pkonings
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted by 16 people heliopais dakelley lp2 megraw rdiaz torfinnnome djkt n00c farhat druvus BergmanLab polivares Mycology stajich fpattyn jbhiatt