sikorski's Top Recommendations

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	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 34 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted by 19 people Diego_Prada xdeupi Structural Biology Group TorVergata A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 structural_bioinformatics Bioinformatics biehl rph
	Protein modeling and structure prediction with a reduced representation. [My Copy] Acta Biochim Pol, Vol. 51, No. 2. (2004), pp. 349-371. by A. Kolinski posted by 6 people vavi dgront rabio sekmi mijam mcbla
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Utility library for structural bioinformatics [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 584-585. by Dominik Gront, Andrzej Kolinski posted by 6 people mijam mcbla chad_davis dgront rabio Minty
	Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates [My Copy] Journal of Computational Chemistry, Vol. 28, No. 9. (15 July 2007), pp. 1593-1597. by Dominik Gront, Sebastian Kmiecik, Andrzej Kolinski posted by 8 people Gabriel439 mcbla rabio wouterboomsma j3xucite dgront sekmi mijam
	3D-Jury: a simple approach to improve protein structure predictions. [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 1015-1018. by K. Ginalski, A. Elofsson, D. Fischer, L. Rychlewski posted by 7 people newton1234 mcbla rabio karbak dgront schuylrp mijam
	New Monte Carlo technique for studying phase transitions [My Copy] Physical Review Letters, Vol. 61, No. 23. (5 Dec 1988), pp. 2635-2638. by Alan M. Ferrenberg, Robert H. Swendsen posted by 5 people qwermish Structural Biology Group TorVergata A_Coletta_Thesis dgront Diego_Prada
	Theory of protein folding. [My Copy] Current opinion in structural biology, Vol. 14, No. 1. (February 2004), pp. 70-75. by José Nelson N. Onuchic, Peter G. Wolynes posted by 7 people siggi84 flbarroso dgront choonpeng rabio allmensch Diego_Prada
	PDB file parser and structure class implemented in Python [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2308-2310. by Thomas Hamelryck, Bernard Manderick posted by 9 people edws klexa Structural Biology Group TorVergata oteri dgruiz bicko dgront rabio massivemayhem
	Statistical potentials for fold assessment. [My Copy] Protein Sci, Vol. 11, No. 2. (February 2002), pp. 430-448. by F. Melo, R. Sánchez, A. Sali posted by 9 people rabio krapnik mijam mcbla barry eckart_bindewald dgront structural_bioinformatics Bioinformatics
	Prediction of protein conformational freedom from distance constraints [My Copy] Proteins: Structure, Function, and Genetics, Vol. 29, No. 2. (7 December 1998), pp. 240-251. by B. L. de Groot, D. M. F. van Aalten, R. M. Scheek, A. Amadei, G. Vriend, H. J. C. Berendsen posted by 7 people yhu dgront rabio superpyrin TSRI_MGL Conformational_disease mijam
	Accurate modeling of protein conformation by automatic segment matching. [My Copy] J Mol Biol, Vol. 226, No. 2. (20 July 1992), pp. 507-533. by M. Levitt posted by 5 people rabio mijam warlock6x3 dgront granujilla
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted by 17 people bmduggan pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 sebk granujilla
	Introduction To Monte Carlo Algorithms [My Copy] (14 Nov 2006) by Werner Krauth posted by 15 people Olmi thegoose2 muraken bertelsen ansobol stephensalomons penka dgront gane5h rabio ujarmatokyaniv softsimu mijam tharris tertel
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	New Monte Carlo algorithms for protein folding. [My Copy] Current opinion in structural biology, Vol. 9, No. 2. (April 1999), pp. 177-183. by U. H. Hansmann, Y. Okamoto posted by 7 people apaydin flbarroso dgront rabio insectopalo iantunbridge nigham
	BioShella package of tools for structural biology computations [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 621-622. by Dominik Gront, Andrzej Kolinski posted by 6 people dimka bicko chad_davis dgront rabio mijam
	Replica-exchange molecular dynamics method for protein folding [My Copy] Chemical Physics Letters, Vol. 314, No. 1-2. (26 November 1999), pp. 141-151. by Y. Sugita posted by 10 people chemrahul82 tovrstra Diego_Prada Structural Biology Group TorVergata oteri Sylvain_Prigent andreasauerwein dgront allmensch rulix
	Is there a unifying mechanism for protein folding? [My Copy] Trends Biochem Sci, Vol. 28, No. 1. (January 2003), pp. 18-25. by V. Daggett, A. R. Fersht posted by 6 people Einat dgront allmensch rabio mirzazadeh structural_bioinformatics
	Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. [My Copy] J Mol Biol, Vol. 213, No. 4. (20 June 1990), pp. 859-883. by M. J. Sippl posted by 8 people rabio bicko P2324548 apostola bpb tolot27 dgront aengisch
	Multidimensional free-energy calculations using the weighted histogram analysis method [My Copy] Journal of Computational Chemistry, Vol. 16, No. 11. (1995), pp. 1339-1350. by Shankar Kumar, John M. Rosenberg, Djamal Bouzida, Robert H. Swendsen, Peter A. Kollman posted by 4 people ibuch Structural Biology Group TorVergata A_Coletta_Thesis dgront
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted by 24 people mgomes Marcotte_Lab qluo stevanspringer Einat marcius eckart_bindewald analogAI dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF mingzhi bethbromley ca3295
	Identification of common molecular subsequences. [My Copy] Journal of molecular biology, Vol. 147, No. 1. (25 March 1981), pp. 195-197. by T. F. Smith, M. S. Waterman posted by 22 people rshe jengeldk maria_hauser jmanning2k cmor parnell adamnellis timflutre heliopais mcbla alessandroparini usagi-kirin creswick vavi bicko dgront rabio cjeans incovoma sujaikumar newton1234 bozdagd
	A general method applicable to the search for similarities in the amino acid sequence of two proteins. [My Copy] Journal of molecular biology, Vol. 48, No. 3. (March 1970), pp. 443-453. by S. B. Needleman, C. D. Wunsch posted by 17 people windman83 esyoun stsaft timflutre mcbla BioNica db344 DarkMars cawelsh9 sebk jwm dgront rabio incovoma yylin newton1234 Ema
	A new approach to prediction of short-range conformational propensities in proteins. [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 981-987. by D. Gront, A. Kolinski posted by 3 people dgront rabio mcbla
	Using quaternions to calculate RMSD. [My Copy] J Comput Chem, Vol. 25, No. 15. (30 November 2004), pp. 1849-1857. by E. A. Coutsias, C. Seok, K. A. Dill posted by 7 people eskay Diego_Prada BragilMassoud apaydin nachtalp dgront rabio
	<FONT SIZE='-2'>CHARMM</FONT>: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (1983), pp. 187-217. by Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus posted by 17 people ubcg08l flbarroso nickolay newton1234 kgutwin r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan gisle
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 84 people VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted by 12 people rabio pavanghatty mijam dgront structural_bioinformatics McCammon Bioinformatics barry baker-group sobolevnrm biehl itmeson
	MaxSub: an automated measure for the assessment of protein structure prediction quality. [My Copy] Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785. by N. Siew, A. Elofsson, L. Rychlewski, D. Fischer posted by 9 people sebk rabio granujilla BragilMassoud marcius dgront BioinfoCIPF SGU-CIPF biehl
	Finite-temperature sequence alignment. [My Copy] Pac Symp Biocomput (2000), pp. 624-635. by M. Kschischo, M. Lässig posted by 2 people dgront rabio
	A reliable sequence alignment method based on probabilities of residue correspondences [My Copy] Protein Eng., Vol. 8, No. 10. (1 October 1995), pp. 999-1009. by Sanzo Miyazawa posted by 3 people krapnik dgront rabio
	Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. [My Copy] Proteins (26 September 2005) by Andrzej Koliński, Janusz M M. Bujnicki posted by 7 people mijam mcbla nigham marcius dgront BioinfoCIPF SGU-CIPF
	Exploring protein energy landscapes with hierarchical clustering. [My Copy] Int J Quantum Chem, Vol. 105, No. 6. (2005), pp. 826-830. by Dominik Gront, Ulrich H E H. Hansmann, Andrzej Kolinski posted by 2 people dgront rabio
	Topology fingerprint approach to the inverse protein folding problem. [My Copy] J Mol Biol, Vol. 227, No. 1. (5 September 1992), pp. 227-238. by A. Godzik, A. Kolinski, J. Skolnick posted by 6 people ana vavi dgront rabio structural_bioinformatics Bioinformatics
	How to derive a protein folding potential? A new approach to an old problem. [My Copy] J Mol Biol, Vol. 264, No. 5. (20 December 1996), pp. 1164-1179. by L. A. Mirny, E. I. Shakhnovich posted by 4 people krapnik dgront rabio Ema
	Exploiting the past and the future in protein secondary structure prediction. [My Copy] Bioinformatics, Vol. 15, No. 11. (November 1999), pp. 937-946. by P. Baldi, S. Brunak, P. Frasconi, G. Soda, G. Pollastri posted by 5 people dgront paolo rabio Bioinformatics girschick
	A unified statistical framework for sequence comparison and structure comparison [My Copy] PNAS, Vol. 95, No. 11. (26 May 1998), pp. 5913-5920. by Michael Levitt, Mark Gerstein posted by 2 people dgront rabio
	On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review [My Copy] Journal of Computational Chemistry, Vol. 29, No. 2. (14 June 2008), pp. 157-166. by Markus Christen, Wilfred F. van Gunsteren posted by 6 people tovrstra BragilMassoud dgront rabio somak dmobley
	HOW WELL CAN SIMULATION PREDICT PROTEIN FOLDING KINETICS AND THERMODYNAMICS? [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (29 October 2005), pp. 43-69. by Christopher D. Snow, Eric J. Sorin, Young M. Rhee, Vijay S. Pande posted by 10 people amphibina flbarroso Diego_Prada doktornoe dgront blackbart allmensch saunders evanse toerst
	A new approach to Monte Carlo simulations in statistical physics: Wang-Landau sampling [My Copy] American Journal of Physics, Vol. 72, No. 10. (2004), pp. 1294-1302. by D. P. Landau, Shan H. Tsai, M. Exler posted by 5 people Paulius_m pcarbo dgront rabio softsimu
	HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins1 [My Copy] Journal of Molecular Biology, Vol. 301, No. 1. (04 August 2000), pp. 173-190. by Christopher Bystroff, Vesteinn Thorsson, David Baker posted by 7 people jwm wouterboomsma j3xucite dgront rabio wenhan MBLAB
	Hidden Markov models for detecting remote protein homologies [My Copy] Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 846-856. by K. Karplus, C. Barrett, R. Hughey posted by 10 people ldiambra treangen j3xucite ana dgront rabio structural_bioinformatics Bioinformatics saunders granujilla
	Profile analysis: detection of distantly related proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 84, No. 13. (July 1987), pp. 4355-4358. by M. Gribskov, A. D. McLachlan, D. Eisenberg posted by 4 people dgront rabio Evangelia ca3295
	Profile hidden Markov models [My Copy] Bioinformatics, Vol. 14, No. 9. (1 October 1998), pp. 755-763. by S. R. Eddy posted by 15 people ldiambra farhat BioNica druvus albert_swart miguel chad_davis eweaver dgront rabio cjeans suizan nklee yoanjacquemin ca3295
	Structure validation by Calpha geometry: &phis;,psi and Cbeta deviation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 3. (15 February 2003), pp. 437-450. by Simon C. Lovell, Ian W. Davis, W. Bryan Arendall, et al.Paul I. W. de Bakker, J. Michael Word, Michael G. Prisant, Jane S. Richardson, David C. Richardson posted by 12 people Diego_Prada bmduggan aqeel jwm robert dgront xiaobeizhao martainn Radiation_Damage Stressosome mijam pavanghatty
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection. [My Copy] Nucleic Acids Res, Vol. 34, No. 17. (2006) by D. Chivian, D. Baker posted by 3 people jwm dgront rabio
	PROFcon: novel prediction of long-range contacts [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2960-2968. by Marco Punta, Burkhard Rost posted by 2 people dgront rabio
	Scoring function for automated assessment of protein structure template quality [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4., pp. 702-710. by Yang Zhang, Jeffrey Skolnick posted by 11 people pjcite saunders reyez karbak marcius dgront aengisch rabio BioinfoCIPF SGU-CIPF granujilla
	Practical conversion from torsion space to Cartesian space for in silico protein synthesis. [My Copy] J Comput Chem, Vol. 26, No. 10. (30 July 2005), pp. 1063-1068. by J. Parsons, J. B. Holmes, J. M. Rojas, J. Tsai, C. E. Strauss posted by 2 people dgront rabio
	Modelling the polypeptide backbone with 'spare parts' from known protein structures [My Copy] Protein Eng., Vol. 2, No. 5. (1 January 1989), pp. 335-345. by Michel Claessens, Eric van Cutsem, Ignace Lasters, Shoshana Wodak posted by 3 people rabio j3xucite dgront
	Profile-profile alignment: a powerful tool for protein structure prediction. [My Copy] Pac Symp Biocomput (2003), pp. 252-263. by N. von Ohsen, I. Sommer, R. Zimmer posted by 2 people dgront rabio
	Sequence alignments in the neighborhood of the optimum with general application to dynamic programming. [My Copy] Proc Natl Acad Sci U S A, Vol. 80, No. 10. (May 1983), pp. 3123-3124. by Michael S S. Waterman posted by 3 people jengeldk dgront rabio
	Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement. [My Copy] Proteins, Vol. 44, No. 2. (1 August 2001), pp. 133-149. by A. Kolinski, M. R. Betancourt, D. Kihara, P. Rotkiewicz, J. Skolnick posted by 2 people dgront rabio
	Characterization of protein-folding pathways by reduced-space modeling [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 30. (24 July 2007), pp. 12330-12335. by Sebastian Kmiecik, Andrzej Kolinski posted by 6 people carlosjavierna mijam wouterboomsma mkurc sekmi nh
	Scoring profile-to-profile sequence alignments. [My Copy] Protein Sci, Vol. 13, No. 6. (June 2004), pp. 1612-1626. by G. Wang, R. L. Dunbrack posted by 3 people dgront rabio newton1234
	Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods. [My Copy] Proteins, Vol. 57, No. 1. (1 October 2004), pp. 188-197. by Tomas Ohlson, Björn Wallner, Arne Elofsson posted by 4 people maria_hauser dgront rabio granujilla
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted by 12 people rpetrenko kgutwin pjcite chad_davis wouterboomsma j3xucite dgront rabio rph dandaman saunders granujilla
	Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. [My Copy] Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747. by I. N. Shindyalov, P. E. Bourne posted by 14 people medic0747 sebk reyez pjcite nigham jwm analogAI dgront rabio siebertm Radiation_Damage Stressosome Inchoate sim82
	Evaluation of coarse grained models for hydrogen bonds in proteins. [My Copy] J Comput Chem (13 February 2007) by David De Sancho, Antonio Rey posted by 4 people Vadikus dgront choonpeng mijam
	Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics. [My Copy] J Mol Biol, Vol. 307, No. 1. (16 March 2001), pp. 429-445. by L. L. Looger, H. W. Hellinga posted by 6 people dfgreen nknii dgront TCR_Signaling mijam carlk
	Efficient, multiple-range random walk algorithm to calculate the density of states. [My Copy] Phys Rev Lett, Vol. 86, No. 10. (5 March 2001), pp. 2050-2053. by F. Wang, D. P. Landau posted by 2 people dgront rabio
	Protein Folding with a Reduced Model and Inaccurate Short-Range Restraints [My Copy] Macromolecular Theory and Simulations, Vol. 14, No. 7. (2005), pp. 444-451. by Dorota Plewczynska, Andrzej Kolinski posted by 2 people dgront rabio
	MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology. [My Copy] J Mol Graph Model, Vol. 22, No. 5. (May 2004), pp. 377-395. by M. Feig, J. Karanicolas, C. L. Brooks posted by 4 people choonpeng dgront allmensch qwermish
	The dead-end elimination theorem and its use in protein side-chain positioning [My Copy] Nature, Vol. 356, No. 6369. (April 1992), pp. 539-542. by Johan Desmet, , Marc D. Maeyer, Bart Hazes, Ignace Lasters posted by 4 people dfgreen dgront bluvsh1 mijam
	Efficient rotamer elimination applied to protein side-chains and related spin glasses. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1335-1340. by R. F. Goldstein posted by 7 people dfgreen dgront bluvsh1 kazemi rsantana mijam carlk
	Stochastic pairwise alignments. [My Copy] Bioinformatics, Vol. 18 Suppl 2 (2002) by U. Mückstein, I. L. Hofacker, P. F. Stadler posted by 2 people dgront rabio
	T-Pile--a package for thermodynamic calculations for biomolecules. [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1840-1842. by D. Gront, A. Kolinski posted by 1 person rabio
	Conformer generation under restraints. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 2. (April 2006), pp. 160-165. by P. I. de Bakker, N. Furnham, T. L. Blundell, M. A. DePristo posted by 5 people aqeel yongzhao dgront rabio TSRI_MGL
	Statistical errors in histogram reweighting [My Copy] Physical Review E, Vol. 51, No. 5. (May 1995), 5092. by Alan M. Ferrenberg, D. P. Landau, Robert H. Swendsen posted by 2 people dgront rabio
	Clustering protein sequences--structure prediction by transitive homology [My Copy] Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 935-941. by Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader posted by 4 people yuslinaz verdicchio dgront rabio
	HCPM--program for hierarchical clustering of protein models. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3179-3180. by D. Gront, A. Kolinski posted by 5 people barry dgront rabio structural_bioinformatics Bioinformatics
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450, No. 7167. (14 October 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. McCoy, Randy J. Read, David Baker posted by 19 people bmduggan newton1234 apaydin aheilbut jwm eckart_bindewald ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm baker-group boris_aguilar Ema chenway ardalby OPIG
	Data clustering: a review [My Copy] ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323. by A. K. Jain, M. N. Murty, P. J. Flynn posted by 79 people ulmer emailhy erikv thegoose elan urvoy stharward thefillm operon avoregnitiv fer votis pick600 pbk nhoussos qwermish svozil takeha-e eabait mthomure mercutio egh ericyu karbak dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul marcius stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ paulovn AbnerCYH tnhh flaviovdf dragonrez iraklis
	Rotamer libraries in the 21st century. [My Copy] Current opinion in structural biology, Vol. 12, No. 4. (August 2002), pp. 431-440. by Roland L. Dunbrack posted by 11 people bmduggan yongzhao dgront blackbart kazemi rsantana medic0747 TSRI_MGL LamBras mijam jwm
	Analytical approximation to the accessible surface area of proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 77, No. 4. (April 1980), pp. 1736-1740. by Shoshana J. Wodak, Joël Janin posted by 3 people melo_mcr dgront mijam
	Joint neighbors approximation of macromolecular solvent accessible surface area. [My Copy] J Comput Chem (3 April 2007) by Georgy Rychkov, Michael Petukhov posted by 4 people dgront mijam hryk BragilMassoud
	Protein structure prediction and structural genomics. [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 93-96. by D. Baker, A. Sali posted by 14 people mijam newton1234 saunders taikoo ana vavi dgront sriram_s mirzazadeh structural_bioinformatics Bioinformatics mingzhi granujilla janasont
	A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 369-379. by Jan Kosinski, Iwona A. Cymerman, Marcin Feder, Michal A. Kurowski, Joanna M. Sasin, Janusz M. Bujnicki posted by 4 people mijam Einat dgront structural_bioinformatics
	X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution [My Copy] Quarterly Reviews of Biophysics, Vol. 40, No. 03. (14 August 2007), pp. 191-285. by Christopher D. Putnam, Michal Hammel, Greg L. Hura, John A. Tainer posted by 5 people paulschlesinger dgront bratwurst birte ColumbusLabs
	Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme. [My Copy] Proteins, Vol. 18, No. 4. (April 1994), pp. 338-352. by A. Kolinski, J. Skolnick posted by 4 people flbarroso wouterboomsma dgront iantunbridge
	Cyclic coordinate descent: A robotics algorithm for protein loop closure. [My Copy] Protein Sci, Vol. 12, No. 5. (May 2003), pp. 963-972. by A. A. Canutescu, R. L. Dunbrack posted by 6 people vavi yongzhao j3xucite dgront TSRI_MGL mijam
	The penultimate rotamer library [My Copy] Proteins: Structure, Function, and Genetics, Vol. 40, No. 3. (2000), pp. 389-408. by Simon C. Lovell, Michael J. Word, Jane S. Richardson, David C. Richardson posted by 3 people dgront kazemi mijam
	Protein fragment reconstruction using various modeling techniques. [My Copy] J Comput Aided Mol Des, Vol. 17, No. 11. (November 2003), pp. 725-738. by M. Boniecki, P. Rotkiewicz, J. Skolnick, A. Kolinski posted by 2 people mijam dgront
	The phase problem. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 59, No. Pt 11. (November 2003), pp. 1881-1890. by G. Taylor posted by 2 people mijam dgront
	VMD: visual molecular dynamics. [My Copy] Journal of molecular graphics, Vol. 14, No. 1. (February 1996) by W. Humphrey, A. Dalke, K. Schulten posted by 7 people bratwurst oceanwind dfgreen gisle lna dimka dgront
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted by 15 people MuraLab karbak nknii j3xucite dgront blackbart kazemi rsantana hmk TCR_Signaling LamBras mijam jwm phoenixzxl zwang
	Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by El-Ad D. Amir, Nir Kalisman, Chen Keasar posted by 3 people rsantana dgront mijam
	A contact map matching approach to protein structure similarity analysis. [My Copy] Genet Mol Res, Vol. 5, No. 2. (2006), pp. 284-308. by R. C. de Melo, C. E. Lopes, F. A. Fernandes, et al.C. H. da Silveira, M. M. Santoro, R. L. Carceroni, W. Meira, A. d. e. . A. Araújo posted by 3 people vavi dgront mijam
	Analysis of X-ray and neutron scattering from biomacromolecular solutions [My Copy] Current Opinion in Structural Biology In Carbohydrates and glycoconjugates / Biophysical methods, Vol. 17, No. 5. (October 2007), pp. 562-571. by Maxim V. Petoukhov, Dmitri I. Svergun posted by 5 people dgront choonpeng sobolevnrm CameronNeylon baker-group
	REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Yunqi Li, Yang Zhang posted by 2 people dgront mijam
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted by 8 people mijam granujilla bullli502 nigham thaliana dgront JimmyMac saunders
	Recovery of protein structure from contact maps. [My Copy] Fold Des, Vol. 2, No. 5. (1997), pp. 295-306. by M. Vendruscolo, E. Kussell, E. Domany posted by 4 people vavi dgront babakap mijam
	GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 3. (1 March 2008), pp. 435-447. by Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl posted by 26 people sunnytov softsimu parnell rabio oteri krapnik robertvacha rodrigofaccioli pavanghatty janneb ZhangYinhe okapi flbarroso marceavi Structural Biology Group TorVergata A_Coletta_Thesis choonpeng Lombardo_7 jwm daevans mmuecke sobolevnrm baker-group r2s2 middledomain loison
	Protein-Folding Dynamics: Overview of Molecular Simulation Techniques [My Copy] Annual Review of Physical Chemistry, Vol. 58, No. 1. (2007), pp. 57-83. by Harold A. Scheraga, Mey Khalili, Adam Liwo posted by 4 people Diego_Prada dgront choonpeng adilson_mohr
	Structure-derived potentials and protein simulations. [My Copy] Curr Opin Struct Biol, Vol. 6, No. 2. (April 1996), pp. 195-209. by R. L. Jernigan, I. Bahar posted by 2 people dgront mcbla
	Multiplexed-Replica Exchange Molecular Dynamics Method for Protein Folding Simulation [My Copy] Biophys. J., Vol. 84, No. 2. (1 February 2003), pp. 775-786. by Young M. Rhee, Vijay S. Pande posted by 2 people dgront allmensch
	The protein folding 'speed limit'. [My Copy] Current opinion in structural biology, Vol. 14, No. 1. (February 2004), pp. 76-88. by Jan Kubelka, James Hofrichter, William A. Eaton posted by 7 people parnell svozil dgront fjc1 choonpeng superpyrin yalexeev