Andreas Andreakis's Top Recommendations

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	Machine Learning [My Copy] (01 March 1997) by Tom M. Mitchell posted by 45 people gavin1332 gagliol pinventado q_w_e_r_t_y librain gabriprat gokopal fiacobelli bgibson zhanwei agogoh3 ogenex TKU_CS DB Lab imrchen gr650 ianwelch frohike misovalko harperf lrozo pdlug yaroslavvb jelsas kmregan carueda jounih buescher76 mthomure hansjoergmueller brunomelo cerkut jvangael ajylha girschick AI RiSE contact-id zchen teesid dquercia robotact jdu sfeige bundschu markusd
	A Coefficient of Agreement for Nominal Scales [My Copy] Educational and Psychological Measurement, Vol. 20, No. 1. (1 April 1960), pp. 37-46. by Jacob Cohen posted by 8 people hehrig FABaker robertlischke shrimp_xia misovalko bayaraa eegilbert akastrin
	An introduction to computational learning theory [My Copy] (1994) by Michael J. Kearns, Umesh V. Vazirani posted by 2 people misovalko bsilverthorn
	Exact model averaging with naive Bayesian classifiers [My Copy] In ICML '02: Proceedings of the Nineteenth International Conference on Machine Learning (2002), pp. 91-98. by Denver Dash, Gregory F. Cooper posted by 1 person misovalko
	Is US health really the best in the world? [My Copy] JAMA, Vol. 284, No. 4. (26 July 2000), pp. 483-485. by B. Starfield posted by 3 people misovalko brocktice TulaneCEP
	Information-theoretic measures for anomaly detection [My Copy] In Proc. of the 2001 IEEE Symposium on Security and Privacy (May 2001), pp. 130-143. by Wenke Lee, Dong Xiang posted by 2 people misovalko wahmad
	Feature Selection for High-Dimensional Genomic Microarray Data [My Copy] In Proc. 18th International Conf. on Machine Learning (2001), pp. 601-608. by Eric P. Xing, Michael I. Jordan, Richard M. Karp posted by 2 people misovalko dimatura
	A geometric framework for unsupervised anomaly detection: Detecting intrusions in unlabeled data [My Copy] (2002) by E. Eskin, A. Arnold, M. Prerau, L. Portnoy, S. Stolfo posted by 2 people misovalko sdvillal
	Efficient algorithms for mining outliers from large data sets [My Copy] (2000), pp. 427-438. by Sridhar Ramaswamy, Rajeev Rastogi, Kyuseok Shim posted by 1 person misovalko
	Algorithms for Mining Distance-Based Outliers in Large Datasets [My Copy] In Proc. 24th Int. Conf. Very Large Data Bases, VLDB (FebruaryApril--FebruaryJuly~ 1998), pp. 392-403. by Edwin M. Knorr, Raymond T. Ng posted by 3 people redmilk misovalko hmahmood
	Improvements on Cross-Validation: The .632+ Bootstrap Method [My Copy] Journal of the American Statistical Association, Vol. 92, No. 438. (1997), pp. 548-560. by Bradley Efron, Robert Tibshirani posted by 5 people buyske liucun dmajka misovalko sbarthelme
	Classification and Regression Trees [My Copy] (01 January 1984) by Leo Breiman, Jerome Friedman, Charles J. Stone, R. A. Olshen posted by 12 people felixandrews joelrosa gabriprat minrmw imrchen ctacmo misovalko mthomure rabio rogerblake nmdang yaroslavvb
	Adaptive Fraud Detection [My Copy] Data Mining and Knowledge Discovery, Vol. 1, No. 3. (1997), pp. 291-316. by Tom Fawcett, Foster J. Provost posted by 10 people mmcgloho misovalko lfriedl sdvillal QFRMC zzztimbo Repton robincha QFRMC_ConsumerCredit issbg
	Jackknife, Bootstrap and Other Resampling Methods in Regression Analysis [My Copy] The Annals of Statistics, Vol. 14, No. 4. (1986), pp. 1261-1295. by C. F. J. Wu posted by 6 people nilsma dejang misovalko ctacmo Statistics_and_Social_Science Biostatistics
	C4.5: Programs for Machine Learning (Morgan Kaufmann Series in Machine Learning) [My Copy] (15 January 1993) by J. Ross Quinlan posted by 11 people anib pinventado xuzhe83 imrchen akastrin misovalko fmatthes sammydre vikx01 WAND puthy
	A theory of the learnable [My Copy] Commun. ACM, Vol. 27, No. 11. (November 1984), pp. 1134-1142. by L. G. Valiant posted by 7 people misovalko mthomure sdvillal AbnerCYH dwf mangesh bsilverthorn
	Toward Optimal Feature Selection [My Copy] In International Conference on Machine Learning (1996), pp. 284-292. by Daphne Koller, Mehran Sahami posted by 9 people h-chi misovalko metamerist luispedro sdvillal mmunson dimatura eacosta srp33
	A Leisurely Look at the Bootstrap, the Jackknife, and Cross-Validation [My Copy] The American Statistician, Vol. 37, No. 1. (1983), pp. 36-48. by Bradley Efron, Gail Gong posted by 9 people srp33 sfcheung misovalko brian mukundn ddahlem skrofej karfunkel dmajka
	A Framework for Knowledge-Based Temporal Abstraction [My Copy] Artificial Intelligence, Vol. 90, No. 1-2. (1997), pp. 79-133. by Yuval Shahar posted by 2 people misovalko fwehbe
	Elements of Information Theory [My Copy] (12 August 1991) by Thomas M. Cover, Joy A. Thomas posted by 20 people memming brian robotact samedina misovalko ppeeling stanley yaroslavvb leidner bayesian BarrosH archroad infogrind dpf kvorg pvfloripa zchen ecome Hans45 abellogin
	Neural Networks and the Bias/Variance Dilemma [My Copy] Neural Computation, Vol. 4, No. 1. (January 1992), pp. 1-58. by Stuart Geman, Elie Bienenstock, René Doursat posted by 9 people asterix77 installe ntrinh misovalko yaroslavvb neteler sdvillal atbrew suizan
	Pattern Classification (2nd Edition) [My Copy] (21 November 2000) by Richard O. Duda, Peter E. Hart, David G. Stork posted by 63 people LDA and dimension reduction techniques emailhy jrodriguez gavin1332 montse_gg kroatiker alexjfalcao purplecrown seninp liamtoh333 lvcargnini ben500 h-chi chiufanlee RafaUsyd aanthon2 eddymier pprett misovalko thefillm pdlug JoSeK thsant mhaller gyuli carueda xtizon leidner 1puumu jekky balajis buescher76 balicea sdvillal pbellec ctacmo jclau bigbossman brunomelo ddos mattjb zeppe dimatura theus CMU-HCII Blog_and_Wiki_Research automatic_summarization video_retrieval ASR AI ComplexAdaptiveSystems RiSE DSTO-CAS abellogin singhsh Medical Image Analysis and Visualization @ OSU haiyeong napvasconcelos ecome matjes yaroslavvb tgyork middell
	A Bayesian Method for the Induction of Probabilistic Networks from Data [My Copy] Machine Learning, Vol. 09, No. 4. (October 1992), pp. 309-347. by G. F. Cooper, E. Herskovits posted by 7 people tmancill tvdbulck misovalko ldfu wnpx famoreira roys
	Discovering simple DNA sequences by the algorithmic significance method [My Copy] Comput. Appl. Biosci., Vol. 9, No. 4. (1 August 1993), pp. 407-411. by Aleksandar Milosavljevic, Jerzy Jurka posted by 1 person chrisamiller
	Causes and consequences of microRNA dysregulation in cancer [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (01 October 2009), pp. 704-714. by Carlo M. Croce posted by 11 people heliopais pattersonee frohike microRNA tonamswish valeriehilgers chrisamiller giovenko megraw ealloza misonneh
	Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6660-6667. by Hannah Carter, Sining Chen, Leyla Isik, et al.Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin posted by 6 people zufar kshameer chrisamiller burak ericrpaquet frohike
	Monosomy of Chromosome 10 Associated With Dysregulation of Epidermal Growth Factor Signaling in Glioblastomas [My Copy] JAMA, Vol. 302, No. 3. (15 July 2009), pp. 276-289. by Ajay K. Yadav, Jaclyn J. Renfrow, Denise M. Scholtens, et al.Hehuang Xie, George E. Duran, Claudia Bredel, Hannes Vogel, James P. Chandler, Arnab Chakravarti, Pierre A. Robe, Sunit Das, Adrienne C. Scheck, John A. Kessler, Marcelo B. Soares, Branimir I. Sikic, Griffith R. Harsh, Markus Bredel posted by 2 people chrisamiller frohike
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted by 18 people hzoltan gbenson adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi APRegier fenghezi jmanning2k xingxu pkonings n00c jandot natstreet
	Mutator Mutations Enhance Tumorigenic Efficiency across Fitness Landscapes [My Copy] PLoS ONE, Vol. 4, No. 6. (10 June 2009), e5860. by Robert A. Beckman posted by 1 person chrisamiller
	Identification of rare cancer driver mutations by network reconstruction [My Copy] Genome Research, Vol. 19, No. 9. (2 September 2009), pp. 1570-1578. by Ali Torkamani, Nicholas J. Schork posted by 5 people xingxu scmelton rdiaz jessopher chrisamiller
	Molecular Profiling of Breast Cancer Cell Lines Defines Relevant Tumor Models and Provides a Resource for Cancer Gene Discovery [My Copy] PLoS ONE, Vol. 4, No. 7. (3 July 2009), e6146. by Jessica Kao, Keyan Salari, Melanie Bocanegra, et al.Yoon-La Choi, Luc Girard, Jeet Gandhi, Kevin A. Kwei, Tina Hernandez-Boussard, Pei Wang, Adi F. Gazdar, John D. Minna, Jonathan R. Pollack posted by 3 people eshirdel tonamswish chrisamiller
	The Need for Centralization of Computational Biology Resources [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000372. by Fran Lewitter, Michael Rebhan, Brent Richter, David Sexton posted by 23 people CBD Convention on Biological Diversity fgibson Fournier34 pekrau flbarroso natstreet Poverty Alleviation from Access to Knowledge Convention on Knowledge Commons jago kongl FabienneGranier druvus nuin VGreiff operon aprasad chrisamiller jmeppley Bioinformatics dswan reyez kshameer dullhunk
	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000368. by Fran Lewitter, Michael Rebhan posted by 27 people pekrau GustavoLacerda fgibson daforerog zwang natstreet sobolevnrm orzenil kongl Convention on Knowledge Commons jago druvus kiekyon nuin operon aprasad chrisamiller dswan reyez djkt GeeSharpMinor structural_bioinformatics McCammon Bioinformatics barry Journal picks ppgardne
	Circos: An information aesthetic for comparative genomics [My Copy] Genome Research, Vol. 19, No. 9. (18 September 2009), pp. 1639-1645. by Martin Krzywinski, Jacqueline Schein, Ä°nanã§ Birol, et al.Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J. Jones, Marco A. Marra posted by 12 people jmanning2k djkt rdiaz pkonings natstreet chrisamiller aprasad BergmanLab cisevol nuin idonaldson kshameer
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted by 17 people carlk polivares inesdesantiago taylor73 Orengo Group Journal Picks ollieredfernwork nuin Mycology stajich iSEEM sriesenfeld idoerg guhjy chrisamiller jmeppley neils druvus
	Importing ArrayExpress datasets into R/Bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2092-2094. by Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, et al.Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber posted by 15 people tonamswish daforerog Orengo Group Journal Picks jperkins shikin ealloza pkonings lwaldron Bioinformatics dswan guhjy chrisamiller nuin neils phoenixzxl
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted by 30 people cthachuk hzoltan seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax BergmanLab polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat Journal picks AlexBateman chrisamiller nuin n00c natstreet sandfire druvus
	Seeing the Forest for the Trees: Using the Gene Ontology to re-structure Hierarchical clustering. [My Copy] Bioinformatics (Oxford, England) (3 June 2009) by Dikla Dotan-Cohen, Simon Kasif, Avraham A A. Melkman posted by 6 people chrisamiller brianb nuin jmeppley fgibson dullhunk
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted by 20 people daveGerrard iris42 guhjy aprasad Bioinformatics dswan BergmanLab cisevol shikin inesdesantiago daforerog Journal picks ppgardne natstreet nuin brianb kshameer neils chrisamiller druvus
	Differential splicing using whole-transcript microarrays. [My Copy] BMC bioinformatics, Vol. 10 (22 May 2009), 156. by M. D. Robinson, T. P. Speed posted by 7 people guhjy Bioinformatics dswan lwaldron chrisamiller humburg neils
	An active registry for bioinformatics web services. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2090-2091. by S. Pettifer, D. Thorne, P. McDermott, et al.T. Attwood, J. Baran, J. C. Bryne, T. Hupponen, D. Mowbray, G. Vriend posted by 17 people pekrau joachimbaran pkonings Bioinformatics dswan Journal picks niallhaslam n00c druvus guhjy flipip23 chrisamiller nuin dbk kshameer dullhunk neils
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted by 18 people hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted by 40 people welliegirl Sergey_gerbek cyounkin Tomste Horduna aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField MarcoAlvarez sobolevnrm Bioinformatics - CRUK Stew dbikard jasontsai casutton franklu310 kieran101 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips Journal picks ppgardne fgibson McCammon barry dullhunk
	A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000382. by Nicholas J. Hudson, Antonio Reverter, Brian P. Dalrymple posted by 11 people rdiaz guhjy tmmurali Borelli giovanni cabbagesofdoom roys chrisamiller dswan ptrobajo dolchan
	The UCSC Cancer Genomics Browser. [My Copy] Nature methods, Vol. 6, No. 4. (April 2009), pp. 239-240. by Jingchun Zhu, J. Zachary Sanborn, Stephen Benz, et al.Christopher Szeto, Fan Hsu, Robert M. Kuhn, Donna Karolchik, John Archie, Marc E. Lenburg, Laura J. Esserman, W. James Kent, David Haussler, Ting Wang posted by 4 people jfr guhjy chrisamiller neils
	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server [My Copy] Bioinformatics (23 March 2009), btp165. by Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden posted by 10 people jfr guhjy Bioinformatics dswan djkt chrisamiller renatomilani phoenixzxl natstreet druvus
	KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1470-1471. by Jitao David D. Zhang, Stefan Wiemann posted by 17 people jfr Thaverkamp daforerog Vincent_Rouilly kiara coela guhjy dolchan neils VGreiff nuin chrisamiller renatomilani jmeppley natstreet phoenixzxl druvus
	GS2: an efficiently computable measure of GO-based similarity of gene sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1178-1184. by Troy Ruths, Derek Ruths, Luay Nakhleh posted by 5 people MarcoAlvarez guhjy sgoetz chrisamiller nuin
	Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites [My Copy] BMC Genomics, Vol. 10 (30 January 2009), 59. by Allison, Yuh-Hwa Wang posted by 1 person chrisamiller
	A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome [My Copy] Genome Research, Vol. 19, No. 2. (9 February 2009), pp. 167-177. by Oliver A. Hampton, Petra Den Hollander, Christopher A. Miller, et al.David A. Delgado, Jian Li, Cristian Coarfa, Ronald A. Harris, Stephen Richards, Steven E. Scherer, Donna M. Muzny, Richard A. Gibbs, Adrian V. Lee, Aleksandar Milosavljevic posted by 9 people burak chrisamiller myzhang jiezhou renatomilani Roswell Cancer Crosstalk Breast Cancer Reading Club songpku Zephyrus
	Better Bioinformatics Through Usability Analysis. [My Copy] Bioinformatics (Oxford, England) (9 December 2008) by Davide Bolchini, Anthony Finkelstein, Vito Perrone, Sylvia Nagl posted by 23 people pekrau FabienneGranier guhjy svozil pkonings dbk rmhirsk niallhaslam renatomilani chrisamiller Yanno fgibson zimbo1 druvus allysonlister Bioinformatics dswan behindtherabbit neils dullhunk sjcockell nuin jmeppley
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted by 7 people GeneGo shikin jfr ipark-kaist chrisamiller Breast Cancer Reading Club Zephyrus
	Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 55-68. by Marie de Tayrac, Amandine Etcheverry, Marc Aubry, et al.Stephan Saïkali, Abderrahmane Hamlat, Veronique Quillien, André Le Treut, Marie-Dominique Galibert, Jean Mosser posted by 8 people burak oelemento jfr chrisamiller Roswell Cancer Crosstalk Zephyrus rdiaz srp33
	Adjustment of systematic microarray data biases. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 1. (1 January 2004), pp. 105-114. by Monica Benito, Joel Parker, Quan Du, et al.Junyuan Wu, Dong Xiang, Charles M. Perou, J. S. Marron posted by 2 people bertelsen chrisamiller
	Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities [My Copy] Cancer Res, Vol. 66, No. 23. (1 December 2006), pp. 11502-11513. by Elizabeth A. Maher, Cameron Brennan, Patrick Y. Wen, et al.Laura Durso, Keith L. Ligon, Aaron Richardson, Deepak Khatry, Bin Feng, Raktim Sinha, David N. Louis, John Quackenbush, Peter M. Black, Lynda Chin, Ronald A. DePinho posted by 2 people caseybrown chrisamiller
	PTEN-deficient cancers depend on PIK3CB [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2008), pp. 13057-13062. by Susan Wee, Dmitri Wiederschain, Sauveur-Michel Maira, et al.Alice Loo, Christine Miller, Rosalie Debeaumont, Frank Stegmeier, Yung-Mae Yao, Christoph Lengauer posted by 2 people guhjy chrisamiller
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert Jansen, Remo Suppi posted by 28 people Zephyrus daveGerrard sotacam cassj walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy shikin robertlischke chrisamiller BergmanLab cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot
	A Population Proportion approach for ranking differentially expressed genes [My Copy] BMC Bioinformatics, Vol. 9 (18 September 2008), 380. by Mugdha Gadgil posted by 2 people guhjy chrisamiller
	Functional copy-number alterations in cancer. [My Copy] PloS one, Vol. 3, No. 9. (11 September 2008), e3179. by Barry S. Taylor, Jordi Barretina, Nicholas D. Socci, et al.Penelope Decarolis, Marc Ladanyi, Matthew Meyerson, Samuel Singer, Chris Sander posted by 7 people chrisamiller daed jfr huiminC oelemento Roswell Cancer Crosstalk Zephyrus
	What are decision trees? [My Copy] Nature biotechnology, Vol. 26, No. 9. (September 2008), pp. 1011-1013. by Carl Kingsford, Steven L. Salzberg posted by 22 people guhjy megraw jwhitney daforerog svozil Yanno logics of knowledge A_Olympia jfr yzlab ptrobajo chrisamiller markusd druvus Roswell Cancer Crosstalk Zephyrus brianb dullhunk sjcockell zwang GeeSharpMinor neils
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted by 27 people ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Roswell Cancer Crosstalk Zephyrus nuin brianb oelemento GeneGo shikin shigepong
	Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays [My Copy] PLoS Genet, Vol. 4, No. 8. (29 August 2008), e1000167. by Nils Homer, Szabolcs Szelinger, Margot Redman, et al.David Duggan, Waibhav Tembe, Jill Muehling, John V. Pearson, Dietrich A. Stephan, Stanley F. Nelson, David W. Craig posted by 13 people merpublic sansue daforerog jsatkosk dnewburger xingxu dfabbri chrisamiller sometwo jasonbobe djkt rs fpattyn
	Seeding and Propagation of Untransformed Mouse Mammary Cells in the Lung [My Copy] Science (28 August 2008), 1161621. by Katrina Podsypanina, Yi-Chieh N. Du, Martin Jechlinger, Levi J. Beverly, Dolores Hambardzumyan, Harold Varmus posted by 9 people jessopher myzhang ajaymalik Breast Cancer Reading Club songpku chrisamiller Zephyrus Breast cancer Roswell Cancer Crosstalk
	Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (1 August 2008), e1000140. by Elena Zotenko, Julian Mestre, Dianne P. O'Leary, Teresa M. Przytycka posted by 14 people lawraga marti chrisamiller kaarsinogen jfr aramata jmjimenez srp33 maralena cabbagesofdoom shikin GeneGo cerca tmmurali
	Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome [My Copy] Genome Res., Vol. 11, No. 9. (1 September 2001), pp. 1584-1593. by Alex Lim, Eileen T. Dimalanta, Konstantinos D. Potamousis, et al.Galex Yen, Jennifer Apodoca, Chunhong Tao, Jieyi Lin, Rong Qi, John Skiadas, Arvind Ramanathan, Nicole T. Perna, Guy Plunkett, Valerie Burland, Bob Mau, Jeremiah Hackett, Frederick R. Blattner, Thomas S. Anantharaman, Bhubaneswar Mishra, David C. Schwartz posted by 1 person chrisamiller
	High-resolution genomic and expression analyses of copy number alterations in breast tumors [My Copy] Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542. by Peter M. Haverty, Jane Fridlyand, Li Li, et al.Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D. Wu, Guy Cavet, Zemin Zhang, John Chant posted by 3 people frohike rdiaz chrisamiller
	High resolution genomic analysis of sporadic breast cancer using array-based comparative genomic hybridization [My Copy] Breast Cancer Research, Vol. 7, No. 6. (2005), pp. R1186-R1198. by Tara Naylor, Joel Greshock, Yan Wang, et al.Theresa Colligon, Q. C. Yu, Virginia Clemmer, Tal Zaks, Barbara Weber posted by 1 person chrisamiller
	Revealing targeted therapy for human cancer by gene module maps. [My Copy] Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378. by D. J. Wong, D. S. Nuyten, A. Regev, et al.M. Lin, A. S. Adler, E. Segal, M. J. van de Vijver, H. Y. Chang posted by 3 people frohike ptrobajo chrisamiller
	Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas posted by 6 people carlk cswinburne jfr GeeSharpMinor chrisamiller guhjy
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. [My Copy] Nature genetics, Vol. 40, No. 6. (27 June 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted by 13 people chvlyl dakelley APRegier myzhang jessopher frohike smiddha xingxu daed matthewsuderman jfr caseybrown chrisamiller
	Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (29 February 2008), e6. by Michał J. Okoniewski, Crispin J. Miller posted by 9 people frohike daveGerrard floatingpoint guhjy neils giovenko jfr chrisamiller eskay
	Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 16. (19 April 2005), pp. 5814-5819. by Yu Liang, Maximilian Diehn, Nathan Watson, et al.Andrew W. Bollen, Ken D. Aldape, M. Kelly Nicholas, Kathleen R. Lamborn, Mitchel S. Berger, David Botstein, Patrick O. Brown, Mark A. Israel posted by 3 people aezrin chrisamiller srp33
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted by 38 people hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin GeneGo psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 Koch_Lab
	Feedback Circuit among INK4 Tumor Suppressors Constrains Human Glioblastoma Development [My Copy] Cancer Cell, Vol. 13, No. 4. (8 April 2008), pp. 355-364. by Ruprecht Wiedemeyer, Cameron Brennan, Timothy P. Heffernan, et al.Yonghong Xiao, John Mahoney, Alexei Protopopov, Hongwu Zheng, Graham Bignell, Frank Furnari, Webster K. Cavenee, William C. Hahn, Koichi Ichimura, Peter V. Collins, Gerald C. Chu, Michael R. Stratton, Keith L. Ligon, Andrew P. Futreal, Lynda Chin posted by 2 people crmlab chrisamiller
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted by 25 people mnishimu Zephyrus biomcgary daforerog roys druvus 4th_floor_JC nicklynch semrich brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown GeneGo ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller
	Merging microarray data from separate breast cancer studies provides a robust prognostic test [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (27 February 2008), 125. by Lei Xu, Aik Tan, Raimond Winslow, Donald Geman posted by 7 people daforerog Zephyrus laral frohike jfr shigepong chrisamiller
	High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates. [My Copy] Cancer Res, Vol. 67, No. 22. (15 November 2007), pp. 10669-10676. by G. Alexe, G. S. Dalgin, D. Scanfeld, et al.P. Tamayo, J. P. Mesirov, C. DeLisi, L. Harris, N. Barnard, M. Martel, A. J. Levine, S. Ganesan, G. Bhanot posted by 3 people jfr chrisamiller aviad_work
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted by 16 people meanerelk marti socwangnan jurgenjanes zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk chrisamiller tmmurali
	Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma [My Copy] Proceedings of the National Academy of Sciences (6 December 2007), 0710052104. by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, et al.Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C. Lee, Julie H. Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K. Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M. Debiasi, Francesca Demichelis, Charlie Hatton, Mark A. Rubin, Levi A. Garraway, Stan F. Nelson, Linda Liau, Mischel, Tim F. Cloughesy, Matthew Meyerson, Todd A. Golub, Eric S. Lander, Ingo K. Mellinghoff, William R. Sellers posted by 11 people giovenko wimufi rdiaz srp33 jfr oelemento cerami loopback007 Cancer_Stem_Cells Glioma Reviews chrisamiller
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	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1338-1349. by Miguel A. Pujana, Jing-Dong J. Han, Lea M. Starita, et al.Kristen N. Stevens, Muneesh Tewari, Jin S. Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M. ElShamy, Jean-Francois Rual, Douglas Levine, Laura S. Rozek, Rebecca S. Gelman, Kristin C. Gunsalus, Roger A. Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine L. Nathanson, Barbara L. Weber, Michael E. Cusick, David E. Hill, Kenneth Offit, David M. Livingston, Stephen B. Gruber, Jeffrey D. Parvin, Marc Vidal posted by 13 people tonamswish ajbattle jaimie koller jmuhlich jfr ealloza cjeans nedwards BioinfoCIPF jdiezperezj phoenixzxl chrisamiller
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	Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models [My Copy] PLoS Genet, Vol. 3, No. 6. (15 June 2007), e96. by Manway Liu, Arthur Liberzon, Sek W. Kong, et al.Weil R. Lai, Peter J. Park, Isaac S. Kohane, Simon Kasif posted by 7 people ptrobajo roys tmmurali zwang ajgentles cabbagezs chrisamiller
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	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted by 5 people aezrin srp33 chrisamiller jfr bioguru2000
	A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 515-527. by Richard M. Neve, Koei Chin, Jane Fridlyand, et al.Jennifer Yeh, Frederick L. Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong posted by 6 people oelemento jfr lhonigberg jayster4 jdiezperezj chrisamiller
	The Consensus Coding Sequences of Human Breast and Colorectal Cancers [My Copy] Science (7 September 2006), 1133427. by Tobias Sjoblom, Sian Jones, Laura D. Wood, et al.Williams D. Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J. Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D. Markowitz, Joseph Willis, Dawn Dawson, James K. Willson, Adi F. Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H. Park, Kurtis E. Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W. Kinzler, Victor E. Velculescu posted by 24 people backlin alessandrobrozzi wimufi aalibes bicko jfr tuck balajis nickluscombe rdiaz eisei jackjackjjj vicsta jtaylor emb51 ramensky massivemayhem cerami xingxu EBI-regulation mingzhi chrisamiller frohike gwenknight
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	The Hallmarks of Cancer [My Copy] Cell, Vol. 100, No. 1. (7 January 2000), pp. 57-70. by D. Hanahan posted by 17 people jessopher t2pp emiko tstricker reyez xingxu chrisamiller catcremona windman83 xico samoday ealloza WetBiology BioinfoCIPF jvonmoltke blackm0k srp33
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [My Copy] Nature genetics, Vol. 34, No. 2. (11 June 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted by 28 people chasmand stharward bertelsen ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne Jarman Lab ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted by 50 people gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet Bioinformatics BioinfoCIPF GeschwindLab Indigene heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH
	An integrative genomics approach to infer causal associations between gene expression and disease. [My Copy] Nature genetics, Vol. 37, No. 7. (19 July 2005), pp. 710-717. by Eric E. Schadt, John Lamb, Xia Yang, et al.Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K. Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Yee Y. Lum, Amy Leonardson, Rolf Thieringer, Joseph M. Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F. Kash, Thomas A. Drake, Alan Sachs, Aldons J. Lusis posted by 19 people mnishimu roys nicholso lawraga ocs pcahan1 tuck brant ckehl koller giovanni lp2 dejori natstreet jo_davies GeschwindLab caseybrown chrisamiller mitko
	Maximum Margin Algorithms with Boolean Kernels [My Copy] by Roni Khardon, Rocco A. Servedio posted by 1 person kira
	Learning Kernel Perceptrons on Noisy Data Using Random Projections [My Copy] Algorithmic Learning Theory (2009), pp. 328-342. by Guillaume Stempfel, Liva Ralaivola posted by 1 person kira
	DRC-BK: Mining Classification Rules by Using Boolean Kernels [My Copy] Computational Science and Its Applications – ICCSA 2005 (2005), pp. 214-222. by Yang Zhang, Zhanhuai Li, Kebin Cui posted by 1 person kira