skembel's Top Recommendations

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	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted by 44 people n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon Microbial-Ecology GIG gatech-compgenomics tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen Green Lab iSEEM kieran101
	Metagenome Annotation Using a Distributed Grid of Undergraduate Students [My Copy] PLoS Biol, Vol. 6, No. 11. (25 November 2008), e296. by Pascal Hingamp, Céline Brochier, Emmanuel Talla, Daniel Gautheret, Denis Thieffry, Carl Herrmann posted by 21 people daforerog operon azazello Bioinformatics - CRUK Stew JustinCrocker nuin jmeppley xingxu guhjy nitiniitk Centre de Recherches Interdisciplinaires dbikard dchughes druvus neils iSEEM djkt ptrobajo dullhunk treangen
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted by 42 people hzoltan operon n00c kinestetika mtagaya iSEEM jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani moernerlab samjlord Bioinformatics - CRUK Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted by 14 people inquil dakelley hwright jonilaserson iSEEM jlgreen chocolate2009 jmeppley Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot Thaverkamp neils skoch3
	Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities [My Copy] PLoS Comput Biol, Vol. 1, No. 2. (12 July 2005), e24. by Kevin Chen, Lior Pachter posted by 15 people ajsferreira hwright dakelley azazello knaseanka ana jmeppley dullhunk bluto wenhan structural_bioinformatics Bioinformatics djkt iSEEM druvus
	The impact of next-generation sequencing technology on genetics [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 133-141. by E. Mardis posted by 27 people rshe jasontsai n00c kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen Green Lab iSEEM cybaer1 giovenko druvus
	A simple, fast, and accurate method of phylogenomic inference [My Copy] Genome Biology, Vol. 9, No. 10. (13 October 2008), R151. by Martin Wu, Jonathan Eisen posted by 15 people dakelley jeargle AaronDarling zwang cgaugain treangen microbiology_nijmegen Katje operon ellakat scryrps iSEEM djkt aramata druvus
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted by 33 people memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin Khavkin's lab phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb iSEEM jlgreen Green Lab nuin
	Accuracy and quality of massively parallel DNA pyrosequencing [My Copy] Genome Biology, Vol. 8, No. 7. (20 July 2007), R143. by Susan Huse, Julie Huber, Hilary Morrison, Mitchell Sogin, David Welch posted by 21 people nfparrish druvus n00c iSEEM jlgreen Thaverkamp orzenil mmartin floatingpoint Huub_odc gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda Bioinformatics blobbybirdman gatech-compgenomics Olaf_Ilzins bozdagd
	Identification of ribosomal RNA genes in metagenomic fragments [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1338-1340. by Ying Huang, Paul Gilna, Weizhong Li posted by 5 people iSEEM djkt Microbial-Ecology Thaverkamp jmeppley
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted by 46 people ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq Bioinformatics dswan dakelley jasontsai DeNovoAssembly-SIMR acn druvus natstreet nmohelli stajich Mycology farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted by 31 people gjuggler parnell kinestetika Orengo Group Journal Picks robertrentzsch xianjun gdb jbhiatt Mycology stajich operon biomcgary kieran101 zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings Journal picks ppgardne dokky aprasad timflutre inquil TRHvidsten iSEEM djkt fenghezi phoenixzxl
	Microbial Ecology of Ocean Biogeochemistry: A Community Perspective [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1043-1045. by Suzanne L. Strom posted by 8 people hwright Thaverkamp bluto djkt jdelcampo Microbial-Ecology iSEEM fornstar
	An application of statistics to comparative metagenomics. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (20 March 2006) by Beltran Rodriguez-Brito, Forest Rohwer, Robert A. Edwards posted by 9 people taylor73 Thaverkamp jmeppley druvus knaseanka bluto carpi djkt iSEEM
	MEGAN analysis of metagenomic data [My Copy] Genome Research, Vol. 17, No. 3. (06 February 2007), pp. 377-386. by D. H. Huson, A. F. Auch, J. Qi, S. C. Schuster posted by 18 people ajsferreira taylor73 esyoun dakelley Thaverkamp druvus idoerg guhjy treangen jmeppley azazello wenhan carpi alexl mjetten anammox microbiology_nijmegen hpaces
	Spatial scaling of microbial biodiversity [My Copy] Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 501-507. by Jessica Green, Brendan J. Bohannan posted by 11 people fornstar liucun jmeppley cmm FAB-lab mcox vrich jlgreen Green Lab iSEEM djkt
	Microbial population structures in the deep marine biosphere. [My Copy] Science (New York, N.Y.), Vol. 318, No. 5847. (5 October 2007), pp. 97-100. by Julie A. Huber, David B. Mark Welch, Hilary G. Morrison, et al.Susan M. Huse, Phillip R. Neal, David A. Butterfield, Mitchell L. Sogin posted by 12 people inquil madhadron djkt mblwhoi stajich kinestetika microbiology_nijmegen mellabee Fabnot Papers recommended by the Roscoff Plankton Group iSEEM hpaces
	The marine viromes of four oceanic regions. [My Copy] PLoS Biol, Vol. 4, No. 11. (November 2006) by F. E. Angly, B. Felts, M. Breitbart, et al.P. Salamon, R. A. Edwards, C. Carlson, A. M. Chan, M. Haynes, S. Kelley, H. Liu, J. M. Mahaffy, J. E. Mueller, J. Nulton, R. Olson, R. Parsons, S. Rayhawk, C. A. Suttle, F. Rohwer posted by 9 people hwright anphony azazello balicea bluto xingxu djkt iSEEM jlgreen
	A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder. [My Copy] Science (6 September 2007) by Diana L L. Cox-Foster, Sean Conlan, Edward C C. Holmes, et al.Gustavo Palacios, Jay D D. Evans, Nancy A A. Moran, Phenix-Lan L. Quan, Thomas Briese, Mady Hornig, David M M. Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L. Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K. Hutchison, Jan Fredrik F. Simons, Michael Egholm, Jeffery S S. Pettis, W Ian I. Lipkin posted by 13 people pauldobson GustavoLacerda azazello jmeppley bluto carpi Bioinformatics mellabee jlgreen Green Lab iSEEM sconlan hpaces
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted by 9 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot iSEEM jlgreen Thaverkamp treangen ojabado nuin
	Application of 'next-generation' sequencing technologies to microbial genetics [My Copy] Nat Rev Micro, Vol. advanced online publication, No. 4. (23 February 2009), pp. 287-296. by Daniel MacLean, Jonathan D. G. Jones, David J. Studholme posted by 11 people nfparrish n00c kinestetika katholt iSEEM jlgreen roys robsyme hpaces druvus jmeppley
	MetaMine - A tool to detect and analyse gene patterns in their environmental context [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 October 2008), 459. by Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, Frank Glockner posted by 7 people idoerg guhjy iSEEM djkt Mycology stajich druvus
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted by 18 people Julien_Fayolle carlk polivares inesdesantiago taylor73 Orengo Group Journal Picks ollieredfernwork nuin Mycology stajich iSEEM sriesenfeld idoerg guhjy chrisamiller jmeppley neils druvus
	Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite [My Copy] Nature, Vol. 450, No. 7169., pp. 560-565. by Falk Warnecke, Peter Luginbühl, Natalia Ivanova, et al.Majid Ghassemian, Toby H. Richardson, Justin T. Stege, Michelle Cayouette, Alice C. Mchardy, Gordana Djordjevic, Nahla Aboushadi, Rotem Sorek, Susannah G. Tringe, Mircea Podar, Hector G. Martin, Victor Kunin, Daniel Dalevi, Julita Madejska, Edward Kirton, Darren Platt, Ernest Szeto, Asaf Salamov, Kerrie Barry, Natalia Mikhailova, Nikos C. Kyrpides, Eric G. Matson, Elizabeth A. Ottesen, Xinning Zhang, Myriam Hernández, Catalina Murillo, Luis G. Acosta, Isidore Rigoutsos, Giselle Tamayo, Brian D. Green, Cathy Chang, Edward M. Rubin, Eric J. Mathur, Dan E. Robertson, Philip Hugenholtz, Jared R. Leadbetter posted by 9 people Thaverkamp anphony bluto azazello wenhan carpi jlgreen Green Lab iSEEM
	Managing and Analyzing Next-Generation Sequence Data [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted by 46 people idoerg Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet BergmanLab polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton Bioinformatics dswan reyez kshameer TRHvidsten djkt Journal picks ppgardne
	Genomic Islands and the Ecology and Evolution of Prochlorococcus [My Copy] Science, Vol. 311, No. 5768. (24 March 2006), pp. 1768-1770. by Maureen L. Coleman, Matthew B. Sullivan, Adam C. Martiny, et al.Claudia Steglich, Kerrie Barry, Edward F. DeLong, Sallie W. Chisholm posted by 13 people hwright jmeppley Stenuite michC bluto jdelcampo cckan beatrizfernandez African_Lakes_Limnology Microbial-Ecology jlgreen Green Lab iSEEM
	Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques [My Copy] Nature Reviews Microbiology, Vol. 6, No. 5., pp. 339-348. by Rudolf Amann, Bernhard M. Fuchs posted by 11 people hwright Katje microbiology_nijmegen vrich vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group Huub_odc jlgreen Green Lab iSEEM
	Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria [My Copy] Nature (07 March 2007) by Ian Lo, Vincent J. Denef, Nathan C. Verberkmoes, et al.Manesh B. Shah, Daniela Goltsman, Genevieve Dibartolo, Gene W. Tyson, Eric E. Allen, Rachna J. Ram, Chris J. Detter, Paul Richardson, Michael P. Thelen, Robert L. Hettich, Jillian F. Banfield posted by 10 people azazello sharpton kinestetika jmeppley rabu BoranKartal microbiology_nijmegen iSEEM jlgreen Green Lab
	The Microbial Engines That Drive Earth's Biogeochemical Cycles [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1034-1039. by Paul G. Falkowski, Tom Fenchel, Edward F. Delong posted by 11 people hwright thegoose2 nurban microbiology_nijmegen kinestetika tharris jdelcampo Microbial-Ecology djkt iSEEM fornstar
	Predicting Prokaryotic Ecological Niches Using Genome Sequence Analysis [My Copy] PLoS ONE, Vol. 2, No. 8. (2007), e743. by Garret Suen, Barry S. Goldman, Roy D. Welch posted by 9 people jdelcampo Microbial-Ecology blobbybirdman Thaverkamp Myxo group kroos djkt iSEEM druvus
	Inference of population genetic parameters in metagenomics: A clean look at messy data [My Copy] Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327. by Philip L. Johnson, Montgomery Slatkin posted by 5 people Thaverkamp jmeppley bluto djkt iSEEM
	Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity [My Copy] Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406. by Jennifer B. Hughes, Jessica J. Hellmann, Taylor H. Ricketts, Brendan J. Bohannan posted by 9 people jmeppley Stenuite andrewirwin Biological oceanography vrich mcox Olaf_Ilzins djkt iSEEM
	Many-core algorithms for statistical phylogenetics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1370-1376. by Marc A. Suchard, Andrew Rambaut posted by 11 people mlangill druvus nuin AlexBateman bmajoros iSEEM djkt jmeppley svenrahmann rdiaz Neeperando
	Population Genetic Inference From Resequencing Data [My Copy] Genetics, Vol. 181, No. 1. (1 January 2009), pp. 187-197. by Rong Jiang, Simon Tavare, Paul Marjoram posted by 14 people scmelton taylor73 maren jbsaltz RockmanLab dpollard katholt natstreet iSEEM djkt abizar druvus Mycology stajich
	Phylogenetic Signal in the Eukaryotic Tree of Life [My Copy] Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123. by Michael J. Sanderson posted by 12 people cmzmasek caseybrown dchughes stajich Mycology gulsacan jlgreen Green Lab iSEEM aprasad djkt marck
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted by 13 people BioNica mhamada treangen iSEEM pradiptaray zwang nuin timflutre druvus djkt aprasad gjuggler emptyhb
	Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2074-2075. by Kathryn E. Holt, Yik Y. Teo, Heng Li, et al.Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill posted by 10 people jsatkosk jandot Mycology stajich iSEEM djkt guhjy farhat sandfire druvus
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted by 36 people joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson KCL & UCL Bioinformatics rschulz Bioinformatics dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils
	Genomic perspectives in microbial oceanography [My Copy] Nature, Vol. 437, No. 7057. (14 September 2005), pp. 336-342. by Edward F. Delong, David M. Karl posted by 12 people hwright microbiology_nijmegen kinestetika knaseanka Stenuite jdelcampo beatrizfernandez African_Lakes_Limnology Microbial-Ecology jlgreen Green Lab iSEEM
	Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions [My Copy] ISME J, Vol. 2, No. 8. (May 2008), pp. 865-886. by Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, et al.Jose C. Alba, Elena Ivars-Martinez, Matthew R. Henn, Emmanuel Talla, Purificacion Lopez-Garcia posted by 5 people anphony jlgreen Green Lab iSEEM djkt
	Tracking microbial biodiversity through molecular and genomic ecology. [My Copy] Research in microbiology, Vol. 159, No. 1. (b 2008), pp. 67-73. by P. López-García, D. Moreira posted by 6 people mjetten microbiology_nijmegen jlgreen Green Lab iSEEM djkt
	Microbial diversity and the genetic nature of microbial species [My Copy] Nat Rev Micro, Vol. 6, No. 6. (June 2008), pp. 431-440. by Mark Achtman, Michael Wagner posted by 10 people katholt microrita druvus skato_toyaku iSEEM jlgreen Green Lab vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Emergent biogeography of microbial communities in a model ocean. [My Copy] Science, Vol. 315, No. 5820. (30 March 2007), pp. 1843-1846. by M. J. Follows, S. Dutkiewicz, S. Grant, S. W. Chisholm posted by 13 people hwright jmeppley jdelcampo nurban emayorga cursonivel1 Microbial-Ecology cursonivel1 andrewirwin vrich jlgreen Green Lab iSEEM
	Metagenomics: application of genomics to uncultured microorganisms. [My Copy] Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685. by J. Handelsman posted by 9 people skato_toyaku knaseanka vrich mcox orzenil djkt Green Lab iSEEM jlgreen
	Infernal 1.0: inference of RNA alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 10. (15 May 2009), pp. 1335-1337. by Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy posted by 8 people reyez operon iSEEM djkt neils nuin natstreet druvus
	Molecular diversity and ecology of microbial plankton [My Copy] Nature, Vol. 437, No. 7057. (14 September 2005), pp. 343-348. by Stephen J. Giovannoni, Ulrich Stingl posted by 11 people hwright Stenuite jdelcampo beatrizfernandez African_Lakes_Limnology Microbial-Ecology vrich jmeppley jlgreen Green Lab iSEEM
	Methods for comparative metagenomics. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1, No. Suppl 1. (2009) by Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster posted by 8 people taylor73 idoerg Thaverkamp hpaces druvus jmeppley iSEEM jonathaneisen
	Community genomics in microbial ecology and evolution [My Copy] Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 489-498. by Eric E. Allen, Jillian F. Banfield posted by 8 people leechuck knaseanka jmeppley mcox jlgreen Green Lab iSEEM djkt
	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel posted by 9 people nfparrish SIMR bioinformatics ghattem jonilaserson hpaces jmeppley bmaust djkt iSEEM
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted by 26 people heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj Bioinformatics dswan torfinnnome rschulz BergmanLab natstreet druvus jasontsai jmeppley SIMR bioinformatics ghattem nuin polivares n00c aprasad Journal picks niallhaslam idoerg
	Environmental sequence data from the Sargasso Sea reveal that the characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift. [My Copy] Molecular biology and evolution (8 October 2008) by Jinghua Hu, Jeffrey L L. Blanchard posted by 6 people iSEEM jlgreen Thaverkamp jmeppley wasmith75 operon
	Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil [My Copy] Science, Vol. 309, No. 5739. (26 August 2005), pp. 1387-1390. by Jason Gans, Murray Wolinsky, John Dunbar posted by 6 people knaseanka jmeppley paleorthid jlgreen iSEEM djkt
	A major clade of prokaryotes with ancient adaptations to life on land [My Copy] Mol Biol Evol (10 November 2008), msn247. by Fabia U. Battistuzzi, Blair S. Hedges posted by 4 people jmeppley iSEEM djkt skato_toyaku
	Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. [My Copy] PLoS biology, Vol. 6, No. 7. (22 July 2008), e177. by S. L. Simmons, G. Dibartolo, V. J. Denef, D. S. Goltsman, M. P. Thelen, J. F. Banfield posted by 5 people idoerg sharpton druvus djkt iSEEM
	The evolutionary ecology of metacommunities. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 23, No. 6. (June 2008), pp. 311-317. by M. C. Urban, M. A. Leibold, P. Amarasekare, et al.L. De Meester, R. Gomulkiewicz, M. E. Hochberg, C. A. Klausmeier, N. Loeuille, C. de Mazancourt, J. Norberg, J. H. Pantel, S. Y. Strauss, M. Vellend, M. J. Wade posted by 7 people maren anphony skumagai jlgreen Green Lab iSEEM djkt
	Windshield splatter analysis with the Galaxy metagenomic pipeline [My Copy] Genome Research, Vol. 19, No. 11. (9 November 2009), pp. 2144-2153. by Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, et al.Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko posted by 12 people Thaverkamp jmeppley seb1 microbiology_nijmegen Katje iSEEM djkt operon neils idonaldson jgill kshameer
	MetaGene: prokaryotic gene finding from environmental genome shotgun sequences [My Copy] Nucl. Acids Res., Vol. 34, No. 19. (14 November 2006), pp. 5623-5630. by Hideki Noguchi, Jungho Park, Toshihisa Takagi posted by 7 people dakelley Thaverkamp iSEEM jlgreen jmeppley alexl mcox
	SAR11 marine bacteria require exogenous reduced sulphur for growth [My Copy] Nature (12 March 2008) by James H. Tripp, Joshua B. Kitner, Michael S. Schwalbach, John W. H. Dacey, Larry J. Wilhelm, Stephen J. Giovannoni posted by 9 people sanxiyn Microbial-Ecology Thaverkamp mblwhoi vaulot Papers recommended by the Roscoff Plankton Group jlgreen Green Lab iSEEM
	Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes [My Copy] PLoS Comput Biol, Vol. 4, No. 4. (18 April 2008), e1000057. by Jon Bohlin, Eystein Skjerve, David W. Ussery posted by 6 people michaelbarton treangen djkt iSEEM jlgreen Green Lab
	The consequences of genetic drift for bacterial genome complexity [My Copy] Genome Research, Vol. 19, No. 8. (5 August 2009), pp. 1450-1454. by Chih-Horng Kuo, Nancy A. Moran, Howard Ochman posted by 4 people iSEEM djkt Thaverkamp druvus
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted by 37 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
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