thoakley's Top Recommendations

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	Increasing the Efficiency of Searches for the Maximum Likelihood Tree in a Phylogenetic Analysis of up to 150 Nucleotide Sequences. [My Copy] Syst Biol, Vol. 56, No. 6. (December 2007), pp. 988-1010. by D. A. Morrison posted by 3 people druvus aprasad akifumi
	Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. [My Copy] Syst Biol, Vol. 56, No. 5. (October 2007), pp. 837-856. by J. A. McGuire, C. C. Witt, D. L. Altshuler, J. V. Remsen posted by 1 person akifumi
	The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. [My Copy] Syst Biol, Vol. 56, No. 4. (August 2007), pp. 643-655. by J. M. Brown, A. R. Lemmon posted by 1 person akifumi
	Experimental design criteria in phylogenetics: where to add taxa. [My Copy] Syst Biol, Vol. 56, No. 4. (August 2007), pp. 609-622. by K. Geuten, T. Massingham, P. Darius, E. Smets, N. Goldman posted by 2 people akifumi gjuggler
	Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 504-514. by Liang Liu, Dennis K. Pearl posted by 4 people lizbiogen druvus aprasad akifumi
	Correcting the problem of false incongruence due to noise imbalance in the incongruence length difference (ILD) test. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 496-503. by D. L. Quicke, O. R. Jones, D. R. Epstein posted by 1 person akifumi
	Majority-Rule Supertrees [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 445-452. by James A. Cotton, Mark Wilkinson posted by 2 people lizbiogen akifumi
	Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 400-411. by Bryan C. Carstens, Lacey L. Knowles posted by 2 people lizbiogen akifumi
	Seeing the trees for the network: consensus, information content, and superphylogenies. [My Copy] Syst Biol, Vol. 56, No. 2. (April 2007), pp. 345-355. by O. Gauthier, F. J. Lapointe posted by 1 person akifumi
	How many genes should a systematist sample? Conflicting insights from a phylogenomic matrix characterized by replicated incongruence. [My Copy] Syst Biol, Vol. 56, No. 2. (April 2007), pp. 355-363. by J. Gatesy, R. DeSalle, N. Wahlberg posted by 1 person akifumi
	Geological dates and molecular rates: rapid divergence of rivers and their biotas. [My Copy] Syst Biol, Vol. 56, No. 2. (April 2007), pp. 271-282. by J. M. Waters, D. L. Rowe, S. Apte, et al.T. M. King, G. P. Wallis, L. Anderson, R. J. Norris, D. Craw, C. P. Burridge posted by 1 person akifumi
	Accounting for gene rate heterogeneity in phylogenetic inference. [My Copy] Syst Biol, Vol. 56, No. 2. (April 2007), pp. 194-205. by R. B. Bevan, D. Bryant, B. F. Lang posted by 1 person akifumi
	Alignment and topological accuracy of the direct optimization approach via POY and traditional phylogenetics via ClustalW + PAUP. [My Copy] Syst Biol*, Vol. 56, No. 2. (April 2007), pp. 182-193. by T. H. Ogden, M. S. Rosenberg posted by 1 person akifumi
	Phylogenetic Mixtures on a Single Tree Can Mimic a Tree of Another Topology [My Copy] Systematic Biology, Vol. 56, No. 5. (October 2007), pp. 767-775. by Matsen, Frederick, Steel, Mike posted by 1 person akifumi
	Patterns of relative species abundance in rainforests and coral reefs [My Copy] Nature, Vol. 450, No. 7166. (1 November 2007), pp. 45-49. by Igor Volkov, Jayanth R. Banavar, Stephen P. Hubbell, Amos Maritan posted by 4 people akifumi lshaw cactus Carlin
	Fair-Balance Paradox, Star-Tree Paradox and Bayesian Phylogenetics. [My Copy] Mol Biol Evol (7 May 2007) by Ziheng Yang posted by 4 people aprasad akifumi cjeans ryanraaum
	PAML 4: phylogenetic analysis by maximum likelihood. [My Copy] Molecular biology and evolution, Vol. 24, No. 8. (1 August 2007), pp. 1586-1591. by Ziheng Yang posted by 15 people ckenaley biomcgary michaelbarton dquest druvus operon akifumi hdopazo BioNica stajich ryanraaum Mycology RamuAnandakrishnan CharlesM Ema
	A Reversible Jump Method for Bayesian Phylogenetic Inference with a Nonhomogeneous Substitution Model [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1286-1299. by Vivek Gowri-Shankar, Magnus Rattray posted by 1 person akifumi
	kakusan: a computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data [My Copy] Molecular Ecology Notes, Vol. 0, No. 0. (0000), pp. ???-???. by Akifumi S. Tanabe posted by 2 people operon akifumi
	Molecular biogeography of Europe: Pleistocene cycles and postglacial trends [My Copy] Frontiers in Zoology, Vol. 4 (17 April 2007), 11. by Thomas Schmitt posted by 1 person akifumi
	Plio-Pleistocene climate evolution: trends and transitions in glacial cycle dynamics [My Copy] Quaternary Science Reviews, Vol. 26, No. 1-2. (January 2007), pp. 56-69. by Lorraine E. Lisiecki, Maureen E. Raymo posted by 1 person akifumi
	Phyloclimatic Modeling: Combining Phylogenetics and Bioclimatic Modeling [My Copy] Syst Biol, Vol. 55, No. 5. (1 October 2006), pp. 785-802. by C. Yesson, A. Culham posted by 2 people lizbiogen akifumi
	Efficient likelihood computations with nonreversible models of evolution. [My Copy] Syst Biol, Vol. 55, No. 5. (October 2006), pp. 756-768. by B. Boussau, M. Gouy posted by 1 person akifumi
	Methods for selecting fixed-effect models for heterogeneous codon evolution, with comments on their application to gene and genome data [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Le Bao, Hong Gu, Katherine Dunn, Joseph Bielawski posted by 1 person akifumi
	Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Nicolas Lartillot, Henner Brinkmann, Herve Philippe posted by 2 people aprasad akifumi
	SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Beatrice Roure, Naiara R. Ezpeleta, Herve Philippe posted by 8 people calderonv treangen natstreet druvus operon aprasad akifumi dmp
	The Heartbeat of the Oligocene Climate System [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1894-1898. by Heiko Palike, Richard D. Norris, Jens O. Herrle, et al.Paul A. Wilson, Helen K. Coxall, Caroline H. Lear, Nicholas J. Shackleton, Aradhna K. Tripati, Bridget S. Wade posted by 5 people akifumi kmcolo cliamte_change instaar_graduate_students climate_change
	Late cretaceous vicariance in gondwanan amphibians. [My Copy] PLoS ONE, Vol. 1 (2006) by I. V. Bocxlaer, K. Roelants, S. D. Biju, J. Nagaraju, F. Bossuyt posted by 1 person akifumi
	Evolutionary Model Selection with a Genetic Algorithm: A Case Study Using Stem RNA [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 159-170. by Kosakovsky, Frank V. Mannino, Michael B. Gravenor, Spencer V. Muse, Simon D. Frost posted by 2 people druvus akifumi
	Fossil Calibration of Molecular Divergence Infers a Moderate Mutation Rate and Recent Radiations for Pinus [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 90-101. by Willyard Ann, John Syring, David S. Gernandt, Aaron Liston, Richard Cronn posted by 1 person akifumi
	Paleontological Evidence to Date the Tree of Life [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 26-53. by Michael J. Benton, Philip C. Donoghue posted by 6 people aprasad Archaeogenetics akifumi maximilianh smbe2008 dandaman
	MtArt: A New Model of Amino Acid Replacement for Arthropoda [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 1-5. by Federico Abascal, David Posada, Rafael Zardoya posted by 1 person akifumi
	TimeTree: a public knowledge-base of divergence times among organisms. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 23. (1 December 2006), pp. 2971-2972. by S. Blair Hedges, Joel Dudley, Sudhir Kumar posted by 2 people gpalidwor akifumi
	The molecular ecologist's guide to expressed sequence tags [My Copy] Molecular Ecology, Vol. 0, No. 0. (0000), pp. ???-???. by Amy Bouck, Todd Vision posted by 3 people balicea akifumi TaqSys
	Shifting distributions and speciation: species divergence during rapid climate change [My Copy] Molecular Ecology, Vol. 0, No. 0. (0000), pp. ???-???. by Bryan C. Carstens, Knowles posted by 1 person akifumi
	Detecting Non-Brownian Trait Evolution in Adaptive Radiations [My Copy] PLoS Biology, Vol. 4, No. 11. (1 November 2006), e373. by Robert P. Freckleton, Paul H. Harvey posted by 3 people akifumi cmm FAB-lab
	Detecting the node-density artifact in phylogeny reconstruction. [My Copy] Syst Biol, Vol. 55, No. 4. (August 2006), pp. 637-643. by C. Venditti, A. Meade, M. Pagel posted by 1 person akifumi
	Dating dispersal and radiation in the gymnosperm Gnetum (Gnetales)--clock calibration when outgroup relationships are uncertain. [My Copy] Syst Biol, Vol. 55, No. 4. (August 2006), pp. 610-622. by H. Won, S. S. Renner posted by 1 person akifumi
	A phyloclimatic study of Cyclamen [My Copy] BMC Evolutionary Biology, Vol. 6 (20 September 2006), 72. by Chris Yesson, Alastair Culham posted by 1 person akifumi
	autoinfer1.0: a computer program to infer biogeographical events automatically [My Copy] Molecular Ecology Notes, Vol. 6, No. 3. (September 2006), pp. 597-599. by Ai-Bing Zhang, Shengjiang Tan, Teiji Sota posted by 2 people akifumi TaqSys
	Phylogenetic estimation under codon models can be biased by codon usage heterogeneity [My Copy] Molecular Phylogenetics and Evolution, Vol. 40, No. 2. (August 2006), pp. 428-434. by Yuji Inagaki, Andrew J. Roger posted by 3 people akifumi cmm FAB-lab
	Searching for Convergence in Phylogenetic Markov Chain Monte Carlo [My Copy] Systematic Biology, Vol. 55, No. 4. (August 2006), pp. 553-565. by Beiko, Robert, Keith, et al. Jonathan, Harlow, Timothy, Ragan, Mark posted by 4 people treangen akifumi redelings rsandie
	Phylogeny and Biogeography of a Cosmopolitan Frog Radiation: Late Cretaceous Diversification Resulted in Continent-Scale Endemism in the Family Ranidae [My Copy] Systematic Biology, Vol. 55, No. 4. (August 2006), pp. 579-594. by Bossuyt, Franky, Brown, et al. Rafe, Hillis, David, Cannatella, David, Milinkovitch, Michel posted by 1 person akifumi
	An improved technique for isolating codominant compound microsatellite markers. [My Copy] J Plant Res (25 April 2006) by Chunlan L. Lian, Md A. Wadud, Qifang Geng, Kenichiro Shimatani, Taizo Hogetsu posted by 1 person akifumi
	Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome [My Copy] Journal of Biomedical Informatics In Phylogenetic Inferencing: Beyond Biology, Vol. 39, No. 1. (February 2006), pp. 51-61. by C. Kosiol, L. Bofkin, S. Whelan posted by 5 people katholt gjuggler aprasad akifumi BioNica
	Tree disagreement: Measuring and testing incongruence in phylogenies [My Copy] Journal of Biomedical Informatics In Phylogenetic Inferencing: Beyond Biology, Vol. 39, No. 1. (February 2006), pp. 86-102. by P. Planet posted by 2 people aprasad akifumi
	Multiple Sequence Alignment Accuracy and Phylogenetic Inference [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 314-328. by T. Ogdenw, Michael Rosenberg posted by 4 people druvus treangen aprasad akifumi
	Utility of Nuclear Allele Networks for the Analysis of Closely Related Species in the Genus Carabus , Subgenus Ohomopterus [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 329-344. by Teiji Sota, Masataka Sasabe posted by 1 person akifumi
	Goodbye Gondwana? New Zealand Biogeography, Geology, and the Problem of Circularity [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 351-356. by Jonathan Waters, Dave Craw posted by 1 person akifumi
	A Review of: Biogeography: An Ecological and Evolutionary Approach, 7th edition [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 361-363. by Isabel Sanmartin posted by 1 person akifumi
	Nuclear Gene Variation and Molecular Dating of the Cichlid Species Flock of Lake Malawi [My Copy] Molecular Biology and Evolution, Vol. 23, No. 4. (April 2006), pp. 828-837. by Yong-Jin Won, Yong Wang, Arjun Sivasundar, Jeremy Raincrow, Jody Hey posted by 4 people akifumi breden FAB-lab SFUAntibodyResearch
	Computing Bayes Factors Using Thermodynamic Integration [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 195-207. by Nicolas Lartillot, Herve Philippe posted by 1 person akifumi
	Paloverde: an OpenGL 3-D phylogeny browser. [My Copy] Bioinformatics (24 February 2006) by Michael J J. Sanderson posted by 5 people AaronDarling dparks aprasad eckart_bindewald akifumi
	Beyond Pairwise Distances: Neighbor-Joining with Phylogenetic Diversity Estimates [My Copy] Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 491-498. by Dan Levy, Ruriko Yoshida, Lior Pachter posted by 3 people akifumi cvernesi ArtemPankin
	Rate Asymmetry After Genome Duplication Causes Substantial Long-Branch Attraction Artifacts in the Phylogeny of Saccharomyces Species [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 245-253. by Mario A. Fares, Kevin P. Byrne, Kenneth H. Wolfe posted by 2 people dbensasson akifumi
	On the Correlation Between Composition and Site-Specific Evolutionary Rate: Implications for Phylogenetic Inference [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 352-364. by Vivek Gowri-Shankar, Magnus Rattray posted by 3 people akifumi penka Nie
	A New Method for Estimating Nonsynonymous Substitutions and Its Applications to Detecting Positive Selection [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 372-379. by Hua Tang, Chung-I Wu posted by 3 people stevanspringer akifumi FAB-lab
	Systematics and evolution of the cutworm moths (Lepidoptera: Noctuidae): evidence from two protein-coding nuclear genes [My Copy] Systematic Entomology, Vol. 31, No. 1. (January 2006), pp. 21-46. by Andrew Mitchell, Charles Mitter, Jerome C. Regier posted by 1 person akifumi
	Molecular dating of phylogenetic trees: A brief review of current methods that estimate divergence times [My Copy] Diversity & Distributions, Vol. 12, No. 1. (January 2006), pp. 35-48. by Frank Rutschmann posted by 2 people aprasad akifumi
	The Inverse Relationship Between Evolutionary Rate and Age of Mammalian Genes Is an Artifact of Increased Genetic Distance with Rate of Evolution and Time of Divergence [My Copy] Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 1-3. by Eran Elhaik, Niv Sabath posted by 2 people akifumi gjuggler
	Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences [My Copy] Mol Biol Evol, Vol. 23, No. 1. (1 January 2006), pp. 7-9. by Beth Shapiro, Andrew Rambaut, Alexei J. Drummond posted by 5 people akifumi spavey BioNica FAB-lab ArtemPankin
	Heterotachy and Tree Building: A Case Study with Plastids and Eubacteria [My Copy] Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 40-45. by Peter Lockhart, Phil Novis, Brook G. Milligan, Jamie Riden, Andrew Rambaut, Tony Larkum posted by 1 person akifumi
	Selectionism and Neutralism in Molecular Evolution [My Copy] Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2318-2342. by Masatoshi Nei posted by 14 people codonusage aprasad gjuggler stevanspringer operon akifumi penka BioNica timflutre ankur_iitg Nie FAB-lab ArtemPankin druvus
	Maximum Likelihood Outperforms Maximum Parsimony Even When Evolutionary Rates Are Heterotachous [My Copy] Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2139-2141. by Sudhindra R. Gadagkar, Sudhir Kumar posted by 2 people akifumi ArtemPankin
	Molecular Phylogeny and Divergence Times of Deuterostome Animals [My Copy] Mol Biol Evol, Vol. 22, No. 11. (1 November 2005), pp. 2275-2284. by Jaime E. Blair, S. Blair Hedges posted by 4 people cmzmasek Auger akifumi maximilianh
	The Comparison of the Confidence Regions in Phylogeny [My Copy] Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2285-2296. by Xiaofei Shi, Hong Gu, Edward Susko, Chris Field posted by 1 person akifumi
	Modelled atmospheric temperatures and global sea levels over the past million years [My Copy] Nature, Vol. 437, No. 7055., pp. 125-128. by Richard Bintanja, Roderik S. W. van de Wal, Johannes Oerlemans posted by 1 person akifumi
	ProtTest: selection of best-fit models of protein evolution [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2104-2105. by Federico Abascal, Rafael Zardoya, David Posada posted by 7 people BioNica druvus lizbiogen cmzmasek akifumi penka Nie
	Phylogenetic analysis of the Wnt gene family. Insights from lophotrochozoan members. [My Copy] Current biology : CB, Vol. 12, No. 16. (20 August 2002) by Benjamin Prud'homme, Nicolas Lartillot, Guillaume Balavoine, André Adoutte, Michel Vervoort
	Evolution of the bilaterian larval foregut. [My Copy] Nature, Vol. 409, No. 6816. (4 January 2001), pp. 81-85. by D. Arendt, U. Technau, J. Wittbrodt
	beta-Catenin asymmetries after all animal/vegetal- oriented cell divisions in Platynereis dumerilii embryos mediate binary cell-fate specification. [My Copy] Developmental cell, Vol. 13, No. 1. (July 2007), pp. 73-86. by Stephan Q. Schneider, Bruce Bowerman
	Alignment by maximization of mutual information [My Copy] Computer Vision, IEEE International Conference on, Vol. 0 (1995), 16. by P. Viola, Iii W. M. Wells
	Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy. [My Copy] BioTechniques, Vol. 42, No. 6. (June 2007), pp. 751-755. by Gáspár Jékely, Detlev Arendt
	The polychaete <I>Platynereis dumerilii</I> (Annelida): a laboratory animal with spiralian cleavage, lifelong segment proliferation and a mixed benthic/pelagic life cycle [My Copy] BioEssays, Vol. 26, No. 3. (2004), pp. 314-325. by Albrecht Fischer, Adriaan Dorresteijn posted by 1 person rajutomer
	Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development. [My Copy] BioTechniques, Vol. 39, No. 4. (October 2005) by Kristin Tessmar-Raible, Patrick R. Steinmetz, Heidi Snyman, Monika Hassel, Detlev Arendt posted by 1 person rajutomer
	Engineering and algorithm design for an image processing Api: a technical report on ITK--the Insight Toolkit. [My Copy] Studies in health technology and informatics, Vol. 85 (2002), pp. 586-592. by Terry S. Yoo, Michael J. Ackerman, William E. Lorensen, et al.Will Schroeder, Vikram Chalana, Stephen Aylward, Dimitris Metaxas, Ross Whitaker
	A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. [My Copy] Molecular microbiology, Vol. 66, No. 5. (December 2007), pp. 1174-1191. by Verena Pfeiffer, Alexandra Sittka, Raju Tomer, Karsten Tedin, Volker Brinkmann, Jörg Vogel
	Orthologs of key vertebrate neural genes are expressed during neurogenesis in the annelid <i>Platynereis dumerilii</i> [My Copy] Evolution & Development, Vol. 11, No. 5. (2009), pp. 513-524. by Pierre Kerner, Elena Simionato, Martine Le Gouar, Michel Vervoort
	The 'division of labour' model of eye evolution. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 364, No. 1531. (12 October 2009), pp. 2809-2817. by Detlev Arendt, Harald Hausen, Günter Purschke posted by 1 person rajutomer
	Infrastructure for the life sciences: design and implementation of the UniProt website [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 136. by Eric Jain, Amos Bairoch, Severine Duvaud, et al.Isabelle Phan, Nicole Redaschi, Baris Suzek, Maria Martin, Peter McGarvey, Elisabeth Gasteiger posted by 9 people Scis0000002 cdsouthan guhjy fgibson dullhunk natstreet dswan operon druvus
	The Universal Protein Resource (UniProt) 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D169-174. by UniProt Consortium posted by 13 people saunders barmak7282 azazello badi MarcoAlvarez tfuji nedwards niallhaslam bicko gjuggler lptolik coela sjcockell
	Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria. [My Copy] Cell, Vol. 129, No. 2. (20 April 2007), pp. 277-288. by Alexandru S. Denes, Gáspár Jékely, Patrick R. Steinmetz, et al.Florian Raible, Heidi Snyman, Benjamin Prud'homme, David E. Ferrier, Guillaume Balavoine, Detlev Arendt
	atonal- and achaete-scute-related genes in the annelid Platynereis dumerilii: insights into the evolution of neural basic-Helix-Loop-Helix genes. [My Copy] BMC evolutionary biology, Vol. 8 (09 June 2008), 170. by Elena Simionato, Pierre Kerner, Nicolas Dray, et al.Martine Le Gouar, Valérie Ledent, Detlev Arendt, Michel Vervoort posted by 1 person MSchipper
	Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria. [My Copy] Development (Cambridge, England), Vol. 129, No. 5. (1 March 2002), pp. 1143-1154. by Detlev Arendt, Kristin Tessmar, Maria-Ines Medeiros I. de Campos-Baptista, Adriaan Dorresteijn, Joachim Wittbrodt
	Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1389-1400. by Kristin Tessmar-Raible, Florian Raible, Foteini Christodoulou, et al.Keren Guy, Martina Rembold, Harald Hausen, Detlev Arendt posted by 2 people andersbj microRNA
	Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. [My Copy] Science (New York, N.Y.), Vol. 310, No. 5752. (25 November 2005), pp. 1325-1326. by Florian Raible, Kristin Tessmar-Raible, Kazutoyo Osoegawa, et al.Patrick Wincker, Claire Jubin, Guillaume Balavoine, David Ferrier, Vladimir Benes, Pieter de Jong, Jean Weissenbach, Peer Bork, Detlev Arendt posted by 2 people MSchipper dayjm
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 84 people VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted by 36 people biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica timflutre adijr xingxu biomedical-nlp newton1234 Lombardo_7
	On the determinants of population structure in antigenically diverse pathogens. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 269, No. 1488. (7 February 2002), pp. 227-233. by M. G. Gomes, G. F. Medley, D. J. Nokes posted by 1 person alexeid
	The conditioned reconstructed process [My Copy] Journal of Theoretical Biology, Vol. 253, No. 4. (21 August 2008), pp. 769-778. by T. Gernhard posted by 1 person alexeid
	Gustave Malecot, 19111998: Population Genetics Founding Father [My Copy] Genetics, Vol. 152, No. 2. (1 June 1999), pp. 477-484. by Bryan K. Epperson posted by 1 person alexeid
	Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species [My Copy] Systematic Biology (October 2003), pp. 705-716. by Z. Yang, A. D. Yoder posted by 1 person alexeid
	Evolution in a flat fitness landscape [My Copy] Bulletin of Mathematical Biology, Vol. 53, No. 3. (May 1991), pp. 355-382. by Bernard Derrida, Luca Peliti posted by 1 person alexeid
	Distribution of Fitness and Virulence Effects Caused by Single-Nucleotide Substitutions in Tobacco Etch Virus [My Copy] J. Virol., Vol. 81, No. 23. (1 December 2007), pp. 12979-12984. by Purificacion Carrasco, de La, Santiago F. Elena posted by 1 person alexeid
	The reinfection threshold [My Copy] Journal of Theoretical Biology, Vol. 236, No. 1. (07 September 2005), pp. 111-113. by M. Gomes, L. White, G. Medley posted by 1 person alexeid
	BEST: Bayesian estimation of species trees under the coalescent model [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2542-2543. by Liang Liu posted by 7 people lizbiogen robfsouza AaronDarling gjuggler druvus alexeid nuin
	A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree [My Copy] Genetics (9 September 2008), genetics.107.085753. by Arindam Roychoudhury, Joseph Felsenstein, Elizabeth A. Thompson posted by 3 people renewang alexeid djkt
	Self-destructive cooperation mediated by phenotypic noise [My Copy] Nature, Vol. 454, No. 7207. (2008), pp. 987-990. by Martin Ackermann, Barbel Stecher, Nikki E. Freed, Pascal Songhet, Wolf-Dietrich Hardt, Michael Doebeli posted by 8 people Morgan Lab-KSU theodorejmorgan niallhaslam alexeid erel10 skumagai jjray kentsis
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted by 33 people memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin Khavkin's lab phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb iSEEM jlgreen Green Lab nuin