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	OPUS-PSP: An Orientation-dependent Statistical All-atom Potential Derived from Side-chain Packing [My Copy] Journal of Molecular Biology, Vol. 376, No. 1. (8 February 2008), pp. 288-301. by Mingyang Lu, Athanasios D. Dousis, Jianpeng Ma posted by 4 people mijam j3xucite cdeane kgutwin
	Loopholes and missing links in protein modeling. [My Copy] Protein Sci, Vol. 16, No. 9. (September 2007), pp. 1999-2012. by K. A. Rossi, C. A. Weigelt, A. Nayeem, S. R. Krystek posted by 3 people mijam cdeane LamBras
	Loop modeling: sampling, filtering, and scoring. [My Copy] Proteins (29 August 2007) by Cinque S S. Soto, Marc Fasnacht, Jiang Zhu, Lucy Forrest, Barry Honig posted by 4 people mijam granujilla cdeane OPIG
	Modeling protein loops with knowledge-based prediction of sequence-structure alignment. [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2836-2842. by H. P. Peng, A. S. Yang posted by 3 people mijam carlosjavierna cdeane
	Statistical potential for assessment and prediction of protein structures. [My Copy] Protein Sci, Vol. 15, No. 11. (November 2006), pp. 2507-2524. by M. Y. Shen, A. Sali posted by 7 people Anis mijam kgutwin wouterboomsma j3xucite cdeane dimka
	REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Yunqi Li, Yang Zhang posted by 2 people dgront mijam
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted by 12 people rabio pavanghatty mijam dgront structural_bioinformatics McCammon Bioinformatics barry baker-group sobolevnrm biehl itmeson
	The phase problem. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 59, No. Pt 11. (November 2003), pp. 1881-1890. by G. Taylor posted by 2 people mijam dgront
	Utility library for structural bioinformatics [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 584-585. by Dominik Gront, Andrzej Kolinski posted by 6 people mijam mcbla chad_davis dgront rabio Minty
	Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by El-Ad D. Amir, Nir Kalisman, Chen Keasar posted by 3 people rsantana dgront mijam
	Analytical approximation to the accessible surface area of proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 77, No. 4. (April 1980), pp. 1736-1740. by Shoshana J. Wodak, Joël Janin posted by 3 people melo_mcr dgront mijam
	Characterization of protein-folding pathways by reduced-space modeling [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 30. (24 July 2007), pp. 12330-12335. by Sebastian Kmiecik, Andrzej Kolinski posted by 6 people carlosjavierna mijam wouterboomsma mkurc sekmi nh
	Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates [My Copy] Journal of Computational Chemistry, Vol. 28, No. 9. (15 July 2007), pp. 1593-1597. by Dominik Gront, Sebastian Kmiecik, Andrzej Kolinski posted by 8 people Gabriel439 mcbla rabio wouterboomsma j3xucite dgront sekmi mijam
	Joint neighbors approximation of macromolecular solvent accessible surface area. [My Copy] J Comput Chem (3 April 2007) by Georgy Rychkov, Michael Petukhov posted by 4 people dgront mijam hryk BragilMassoud
	Evaluation of coarse grained models for hydrogen bonds in proteins. [My Copy] J Comput Chem (13 February 2007) by David De Sancho, Antonio Rey posted by 4 people Vadikus dgront choonpeng mijam
	Introduction To Monte Carlo Algorithms [My Copy] (14 Nov 2006) by Werner Krauth posted by 15 people Olmi thegoose2 muraken bertelsen ansobol stephensalomons penka dgront gane5h rabio ujarmatokyaniv softsimu mijam tharris tertel
	The penultimate rotamer library [My Copy] Proteins: Structure, Function, and Genetics, Vol. 40, No. 3. (2000), pp. 389-408. by Simon C. Lovell, Michael J. Word, Jane S. Richardson, David C. Richardson posted by 3 people dgront kazemi mijam
	Replica Monte Carlo Simulation of Spin-Glasses [My Copy] Physical Review Letters, Vol. 57, No. 21. (24 November 1986), 2607. by Robert H. Swendsen, Jian-Sheng Wang posted by 7 people mijam Sylvain_Prigent dgront sikorski rabio qwermish iantunbridge
	Structure validation by Calpha geometry: &phis;,psi and Cbeta deviation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 3. (15 February 2003), pp. 437-450. by Simon C. Lovell, Ian W. Davis, W. Bryan Arendall, et al.Paul I. W. de Bakker, J. Michael Word, Michael G. Prisant, Jane S. Richardson, David C. Richardson posted by 12 people Diego_Prada bmduggan aqeel jwm robert dgront xiaobeizhao martainn Radiation_Damage Stressosome mijam pavanghatty
	A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 369-379. by Jan Kosinski, Iwona A. Cymerman, Marcin Feder, Michal A. Kurowski, Joanna M. Sasin, Janusz M. Bujnicki posted by 4 people mijam Einat dgront structural_bioinformatics
	Protein fragment reconstruction using various modeling techniques. [My Copy] J Comput Aided Mol Des, Vol. 17, No. 11. (November 2003), pp. 725-738. by M. Boniecki, P. Rotkiewicz, J. Skolnick, A. Kolinski posted by 2 people mijam dgront
	Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures [My Copy] The Journal of Chemical Physics, Vol. 113, No. 12. (2000), pp. 5065-5071. by Dominik Gront, Andrzej Kolinski, Jeffrey Skolnick posted by 4 people mijam dgront sikorski rabio
	Efficient rotamer elimination applied to protein side-chains and related spin glasses. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1335-1340. by R. F. Goldstein posted by 7 people dfgreen dgront bluvsh1 kazemi rsantana mijam carlk
	The dead-end elimination theorem and its use in protein side-chain positioning [My Copy] Nature, Vol. 356, No. 6369. (April 1992), pp. 539-542. by Johan Desmet, , Marc D. Maeyer, Bart Hazes, Ignace Lasters posted by 4 people dfgreen dgront bluvsh1 mijam
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 34 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	BioShella package of tools for structural biology computations [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 621-622. by Dominik Gront, Andrzej Kolinski posted by 6 people dimka bicko chad_davis dgront rabio mijam
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted by 8 people mijam granujilla bullli502 nigham thaliana dgront JimmyMac saunders
	Statistical potentials for fold assessment. [My Copy] Protein Sci, Vol. 11, No. 2. (February 2002), pp. 430-448. by F. Melo, R. Sánchez, A. Sali posted by 9 people rabio krapnik mijam mcbla barry eckart_bindewald dgront structural_bioinformatics Bioinformatics
	Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. [My Copy] Proteins (26 September 2005) by Andrzej Koliński, Janusz M M. Bujnicki posted by 7 people mijam mcbla nigham marcius dgront BioinfoCIPF SGU-CIPF
	Rotamer libraries in the 21st century. [My Copy] Current opinion in structural biology, Vol. 12, No. 4. (August 2002), pp. 431-440. by Roland L. Dunbrack posted by 11 people bmduggan yongzhao dgront blackbart kazemi rsantana medic0747 TSRI_MGL LamBras mijam jwm
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted by 15 people MuraLab karbak nknii j3xucite dgront blackbart kazemi rsantana hmk TCR_Signaling LamBras mijam jwm phoenixzxl zwang
	Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics. [My Copy] J Mol Biol, Vol. 307, No. 1. (16 March 2001), pp. 429-445. by L. L. Looger, H. W. Hellinga posted by 6 people dfgreen nknii dgront TCR_Signaling mijam carlk
	Prediction of protein conformational freedom from distance constraints [My Copy] Proteins: Structure, Function, and Genetics, Vol. 29, No. 2. (7 December 1998), pp. 240-251. by B. L. de Groot, D. M. F. van Aalten, R. M. Scheek, A. Amadei, G. Vriend, H. J. C. Berendsen posted by 7 people yhu dgront rabio superpyrin TSRI_MGL Conformational_disease mijam
	Accurate modeling of protein conformation by automatic segment matching. [My Copy] J Mol Biol, Vol. 226, No. 2. (20 July 1992), pp. 507-533. by M. Levitt posted by 5 people rabio mijam warlock6x3 dgront granujilla
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	3D-Jury: a simple approach to improve protein structure predictions. [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 1015-1018. by K. Ginalski, A. Elofsson, D. Fischer, L. Rychlewski posted by 7 people newton1234 mcbla rabio karbak dgront schuylrp mijam
	Protein structure prediction constrained by solution X-ray scattering data and structural homology identification. [My Copy] J Mol Biol, Vol. 316, No. 1. (8 February 2002), pp. 173-187. by W. Zheng, S. Doniach posted by 2 people thamelry dgront
	On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction [My Copy] The Journal of Chemical Physics, Vol. 116, No. 20. (2002), pp. 9058-9067. by Hiroaki Fukunishi, Osamu Watanabe, Shoji Takada posted by 1 person mijam
	The interplay of fold recognition and experimental structure determination in structural genomics [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 3. (June 2004), pp. 307-312. by I. Friedberg posted by 1 person mijam
	LOOPER: a molecular mechanics-based algorithm for protein loop prediction [My Copy] Protein Engineering, Design and Selection (14 January 2008), gzm083. by Velin Z. Spassov, Paul K. Flook, Lisa Yan posted by 1 person mijam
	MMFF VII. Characterization of MMFF94, MMFF94s, and other widely available force fields for conformational energies and for intermolecular-interaction energies and geometries [My Copy] Journal of Computational Chemistry, Vol. 20, No. 7. (1999), pp. 730-748. by Thomas A. Halgren posted by 1 person mijam
	Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling. [My Copy] Nature methods, Vol. 6, No. 8. (August 2009), pp. 551-552. by Daniel J. Mandell, Evangelos A. Coutsias, Tanja Kortemme posted by 2 people mijam tcschen
	Dopaminergic D1 and D2 Receptors Are Essential for the Arousal Effect of Modafinil [My Copy] J. Neurosci., Vol. 28, No. 34. (20 August 2008), pp. 8462-8469. by Wei-Min Qu, Zhi-Li Huang, Xin-Hong Xu, Naomi Matsumoto, Yoshihiro Urade posted by 1 person mijam
	Dopamine D2High receptors stimulated by phencyclidines, lysergic acid diethylamide, salvinorin A, and modafinil. [My Copy] Synapse (New York, N.Y.), Vol. 63, No. 8. (August 2009), pp. 698-704. by P. Seeman, H. C. Guan, H. Hirbec posted by 1 person mijam
	Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment. [My Copy] Protein science : a publication of the Protein Society, Vol. 2, No. 10. (October 1993), pp. 1697-1714. by A. Liwo, M. R. Pincus, R. J. Wawak, S. Rackovsky, H. A. Scheraga posted by 1 person mijam
	The Roles of Entropy and Kinetics in Structure Prediction [My Copy] PLoS ONE, Vol. 4, No. 6. (9 June 2009), e5840. by Gregory R. Bowman, Vijay S. Pande posted by 3 people mijam kiekyon zwang
	SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins. [My Copy] Nucleic acids research (8 May 2009) by Peter W W. Hildebrand, Andrean Goede, Raphael A A. Bauer, et al.Bjoern Gruening, Jochen Ismer, Elke Michalsky, Robert Preissner posted by 3 people mijam viktor21614 reyez
	Yerba Mate Tea (<i>Ilex paraguariensis</i>): A Comprehensive Review on Chemistry, Health Implications, and Technological Considerations [My Copy] Journal of Food Science, Vol. 72, No. 9. (2007), pp. R138-R151. by C. I. Heck, E. G. de Mejia posted by 1 person mijam
	Entropic Cost of Protein−Ligand Binding and Its Dependence on the Entropy in Solution [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Sheeba J. Irudayam, Richard H. Henchman posted by 4 people agrossfield mijam baker-group sobolevnrm
	Assessing the Role of Polarization in Docking [My Copy] The Journal of Physical Chemistry A, Vol. 112, No. 47. (27 November 2008), pp. 12157-12163. by Christopher J. Illingworth, Garrett M. Morris, Kevin E. Parkes, Christopher R. Snell, Christopher A. Reynolds posted by 1 person mijam
	Understanding Protein Evolution: From Protein Physics to Darwinian Selection [My Copy] Annual Review of Physical Chemistry, Vol. 59, No. 1. (2008), pp. 105-127. by Konstantin B. Zeldovich, Eugene I. Shakhnovich posted by 2 people mijam flbarroso
	Dead-End Based Modeling Tools to Explore the Sequence Space That Is Compatible with a Given Scaffold [My Copy] Journal of Protein Chemistry, Vol. 16, No. 5. (1 July 1997), pp. 449-452. by Ignace Lasters, Johan Desmet, Marc De Maeyer posted by 1 person mijam
	Generalized ensemble methods for de novo structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1415-1420. by Alena Shmygelska, Michael Levitt posted by 7 people mijam rabio kentsis apaydin nurban hmk amishp
	A vectorized algorithm for calculating the accessible surface area of macromolecules [My Copy] Journal of Computational Chemistry, Vol. 12, No. 7. (1991), pp. 868-871. by Huajun Wang, Cyrus Levinthal posted by 1 person mijam
	Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO) [My Copy] Journal of Computational Chemistry, Vol. 20, No. 2. (1999), pp. 217-230. by Jörg Weiser, Peter S. Shenkin, W. Clark Still posted by 2 people RamuAnandakrishnan mijam
	Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations [My Copy] Journal of Computational Chemistry, Vol. 25, No. 8. (2004), pp. 1005-1014. by Olgun Guvench, Charles posted by 2 people saravan mijam
	Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins [My Copy] IEEE Trans. Parallel Distrib. Syst., Vol. 13, No. 6. (2002), pp. 544-555. by Natsuhiki Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan posted by 4 people Structural Biology Group TorVergata LOX-1 Receptor oteri mijam
	Parallel, stochastic measurement of molecular surface area [My Copy] Journal of Molecular Graphics and Modelling, Vol. 27, No. 1. (August 2008), pp. 82-87. by D. Juba, A. Varshney posted by 1 person mijam
	Analytical shape computation of macromolecules: I. molecular area and volume through alpha shape [My Copy] Proteins: Structure, Function, and Genetics, Vol. 33, No. 1. (1998), pp. 1-17. by Jie Liang, Herbert Edelsbrunner, Ping Fu, Pamidighantam V. Sudhakar, Shankar Subramaniam posted by 1 person mijam
	On the shape of a set of points in the plane [My Copy] Information Theory, IEEE Transactions on In Information Theory, IEEE Transactions on, Vol. 29, No. 4. (1983), pp. 551-559. by H. Edelsbrunner, D. Kirkpatrick, R. Seidel posted by 3 people flashfonic rrufai mijam
	Three-dimensional alpha shapes [My Copy] ACM Trans. Graph., Vol. 13, No. 1. (1994), pp. 43-72. by Herbert Edelsbrunner, Ernst P. Mücke posted by 2 people chrisatcite mijam
	On the definition and the construction of pockets in macromolecules [My Copy] Discrete Applied Mathematics, Vol. 88, No. 1-3. (09 November 1998), pp. 83-102. by H. Edelsbrunner posted by 1 person mijam
	The molecular surface package [My Copy] Journal of Molecular Graphics, Vol. 11, No. 2. (June 1993), pp. 139-141. by M. Connolly posted by 1 person mijam
	Environment and exposure to solvent of protein atoms. Lysozyme and insulin [My Copy] Journal of Molecular Biology, Vol. 79, No. 2. (15 September 1973), pp. 351-364. by A. Shrake, J. Rupley posted by 3 people structural_bioinformatics csrocha mijam
	Cosmetic neurology: The controversy over enhancing movement, mentation, and mood [My Copy] Neurology, Vol. 63, No. 6. (28 September 2004), pp. 968-974. by Anjan Chatterjee posted by 1 person mijam
	'Smart drugs': do they work? Are they ethical? Will they be legal? [My Copy] Nature reviews. Neuroscience, Vol. 3, No. 12. (December 2002), pp. 975-979. by S. P. Rose posted by 2 people szielke mijam
	Memory enhancement: the search for mechanism-based drugs. [My Copy] Nature neuroscience, Vol. 5 Suppl (November 2002), pp. 1035-1038. by G. Lynch posted by 1 person mijam
	An information theory model of hydrophobic interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 17. (20 August 1996), pp. 8951-8955. by G. Hummer, S. Garde, A. E. GarcÃa, A. Pohorille, L. R. Pratt posted by 3 people softsimu dmitry_s_yershov mijam
	Structural energetics of protein folding and binding [My Copy] Current Opinion in Biotechnology, Vol. 11, No. 1. (1 February 2000), pp. 62-66. by S. Edgcomb posted by 1 person mijam
	A gradient-directed Monte Carlo approach to molecular design [My Copy] The Journal of Chemical Physics, Vol. 129, No. 6. (2008) by Xiangqian Hu, David N. Beratan, Weitao Yang posted by 1 person mijam
	Single molecule force spectroscopy in biology using the atomic force microscope. [My Copy] Progress in biophysics and molecular biology, Vol. 74, No. 1-2. (2000), pp. 37-61. by J. Zlatanova, S. M. Lindsay, S. H. Leuba posted by 1 person mijam
	CREDO: A Protein–Ligand Interaction Database for Drug Discovery [My Copy] Chemical Biology & Drug Design, Vol. 73, No. 2. (February 2009), pp. 157-167. by Adrian Schreyer, Tom Blundell posted by 7 people mijam richardbickerton pansapiens bicko nanonan massivemayhem higueruelo
	Hydrophobic Collapse in Multidomain Protein Folding [My Copy] Science, Vol. 305, No. 5690. (10 September 2004), pp. 1605-1609. by Ruhong Zhou, Xuhui Huang, Claudio J. Margulis, Bruce J. Berne posted by 1 person mijam
	Hydrophobic interactions: an overview [My Copy] Journal of Physics: Condensed Matter, Vol. 14, No. 40. (2002), pp. 9445-9460. by Pieter R. Wolde posted by 4 people softsimu sunrise mijam sas
	Solvation free energies calculated using the GB/SA model: Sensitivity of results on charge sets, protocols, and force fields [My Copy] Journal of Computational Chemistry, Vol. 19, No. 7. (1998), pp. 769-780. by Rami M. Reddy, Mark D. Erion, Atul Agarwal, Vellarkad N. Viswanadhan, Quentin D. Mcdonald, Clark W. Still posted by 2 people mijam dfgreen
	Visual Image Reconstruction from Human Brain Activity using a Combination of Multiscale Local Image Decoders [My Copy] Neuron, Vol. 60, No. 5. (10 December 2008), pp. 915-929. by Y. Miyawaki, H. Uchida, O. Yamashita, et al.M. Sato, Y. Morito, H. Tanabe, N. Sadato, Y. Kamitani posted by 8 people chiimaino FrankLeone Scis0000002 Borelli manabu-s mijam touryanj Tominator
	SitesBase: a database for structure-based protein-ligand binding site comparisons [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D231-234. by Nicola D. Gold, Richard M. Jackson posted by 3 people iaolier reyez mijam
	Evaluation of an inverse molecular design algorithm in a model binding site [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by David J. Huggins, Michael D. Altman, Bruce Tidor posted by 6 people dfgreen mijam structural_bioinformatics McCammon barry middledomain
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted by 10 people bmduggan choonpeng mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders gisle
	TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model [My Copy] BMC Bioinformatics, Vol. 9 (31 August 2008), 358. by Mallika Veeramalai, Yuzhen Ye, Adam Godzik posted by 4 people mijam trevinor reyez neils
	Importance of accurate charges in molecular docking: Quantum mechanical/molecular mechanical (QM/MM) approach [My Copy] Journal of Computational Chemistry, Vol. 26, No. 9. (2005), pp. 915-931. by Art E. Cho, Victor Guallar, Bruce J. Berne, Richard Friesner posted by 5 people mijam flbarroso boris_aguilar qaiser_fatmi Chang group
	The interpretation of protein structures: Estimation of static accessibility [My Copy] Journal of Molecular Biology, Vol. 55, No. 3. (14 February 1971), pp. 379-380. by B. Lee, F. M. Richards posted by 2 people mijam timg
	Ligand-Protein DataBase: Linking Protein-Ligand Complex Structures to Binding Data [My Copy] J. Med. Chem., Vol. 44, No. 22. (25 October 2001), pp. 3592-3598. by O. Roche, R. Kiyama, C. L. Brooks posted by 2 people mijam boris_aguilar
	Protein structure modeling with MODELLER. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 426 (2008), pp. 145-159. by N. Eswar, D. Eramian, B. Webb, M. Y. Shen, A. Sali posted by 1 person mijam
	A generative, probabilistic model of local protein structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937. by Wouter Boomsma, Kanti V. Mardia, Charles C. Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck posted by 6 people j3xucite bertelsen biehl zwang apaydin mijam
	Glutamate-based therapeutic approaches: ampakines [My Copy] Current Opinion in Pharmacology In Neurosciences - Edited by Alan Foster and John Kemp, Vol. 6, No. 1. (February 2006), pp. 82-88. by Gary Lynch posted by 2 people mijam shoshin
	Mechanisms of membrane fusion: disparate players and common principles [My Copy] Nature Reviews Molecular Cell Biology, Vol. 9, No. 7. (21 May 2008), pp. 543-556. by Sascha Martens, Harvey T. Mcmahon posted by 2 people martainn mijam
	Fast and robust computation of molecular surfaces [My Copy] In SCG '95: Proceedings of the eleventh annual symposium on Computational geometry (1995), pp. 406-407. by Michel F. Sanner, Arthur J. Olson, Jean-Claude Spehner posted by 2 people mijam sithmein
	Solvation energy in protein folding and binding. [My Copy] Nature, Vol. 319, No. 6050. (2 1986), pp. 199-203. by D. Eisenberg, A. D. McLachlan posted by 6 people flbarroso Thermaneutist oceanwind mijam ruvido ashaytan
	Towards an Integrated Description of Hydrogen Bonding and Dehydration: Decreasing False Positives in Virtual Screening with the HYDE Scoring Function [My Copy] ChemMedChem, Vol. 9999, No. 9999. (2008), NA. by Ingo Reulecke, Gudrun Lange, Jürgen Albrecht, Robert Klein, Matthias Rarey posted by 2 people mijam middledomain
	RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. S3. (1999), pp. 15-21. by Tim J. P. Hubbard posted by 2 people mijam rabio
	Distance Geometry and Molecular Conformation (Chemometrics Series) [My Copy] by G. M. Crippen, T. F. Havel posted by 2 people kumar_physics mijam
	The theory and practice of distance geometry [My Copy] Bulletin of Mathematical Biology, Vol. 45, No. 5. (1983), pp. 665-720. by Timothy Havel, Irwin Kuntz, Gordon Crippen posted by 2 people jlh64 mijam
	Hydrophobicity of protein surfaces: Separating geometry from chemistry [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2274-2279. by Nicolas Giovambattista, Carlos F. Lopez, Peter J. Rossky, Pablo G. Debenedetti posted by 5 people qshao krapnik mijam sobolevnrm baker-group
	Integrating Diverse Data for Structure Determination of Macromolecular Assemblies [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (4 March 2008), pp. 443-477. by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali posted by 6 people mijam kgutwin carlk noraziz chad_davis phoenixzxl
	Universal model for [alpha]-helix and [beta]-sheet structures in protein [My Copy] Physica A: Statistical Mechanics and its Applications In Statphys-Taiwan-2002: Lattice Models and Complex Systems, Vol. 321, No. 1-2. (1 April 2003), pp. 181-188. by Jeff Z. Chen, Hideo Imamura posted by 1 person mijam
	Hydrogen Bonds, Hydrophobicity Forces and the Character of the Collapse Transition [My Copy] Journal of Biological Physics, Vol. 27, No. 2. (1 June 2001), pp. 169-179. by A. Irbäck, F. Sjunnesson, S. Wallin posted by 1 person mijam
	Nonparametric relevance-shifted multiple testing procedures for the analysis of high-dimensional multivariate data with small sample sizes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Cornelia Froemke, Ludwig Hothorn, Siegfried Kropf posted by 3 people shigepong mijam guhjy
	Protein Stucture and Function (Primers in Biology) [My Copy] by Gregory A. Petsko, Dagmar Ringe posted by 1 person mijam
	POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3364-3366. by L. Cavallo, J. Kleinjung, F. Fraternali posted by 2 people mijam marti