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	Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 82. by Bartek Wilczynski, Norbert Dojer, Mateusz Patelak, Jerzy Tiuryn posted by 13 people bsamal daveGerrard ilyashl svenrahmann idonaldson maximilianh bmajoros nuin idoerg cis-regulatory-evolution BergmanLab cisevol dquest
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 44 people oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Combining phylogenetic data with co-regulated genes to identify regulatory motifs. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 18. (12 December 2003), pp. 2369-2380. by Ting Wang, Gary D. Stormo posted by 7 people roys coldmeadow maximilianh balajis eckart_bindewald dquest natstreet
	New scoring schema for finding motifs in DNA Sequences [My Copy] BMC Bioinformatics, Vol. 10 (20 March 2009), 93. by Fatemeh, Bahram Goliaei posted by 8 people bsamal svenrahmann cassj idonaldson maximilianh cube_and_beyond ElenaGrassi nuin
	c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Katerina Kechris, Hao Li posted by 7 people tmarscha heliopais GustavoLacerda maximilianh druvus Md_2007 neils
	PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences. [My Copy] BMC Bioinformatics, Vol. 5 (28 October 2004) by S. Sinha, M. Blanchette, M. Tompa posted by 6 people mgledi eckart_bindewald dquest adsmitty lusk xili03
	Comparative analysis of regulatory motif discovery tools for transcription factor binding sites. [My Copy] Genomics Proteomics Bioinformatics, Vol. 5, No. 2. (May 2007), pp. 131-142. by W. Wei, X. D. Yu posted by 4 people natstreet nklee maximilianh heliopais
	An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 1. (07 February 2008), pp. 1-14. by C. Bates Congdon, J. C. Aman, G. M. Nava, H. R. Gaskins, C. J. Mattingly posted by 3 people nklee svenrahmann maximilianh
	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1424-1425. by You Jung Kim, Nikhil Teletia, Victor Ruotti, et al.Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel posted by 17 people bsamal Julien_Fayolle Bioinformatics jfr mmartin n00c guhjy nuin idonaldson Journal picks AlexBateman bmajoros humburg Thaverkamp druvus svenrahmann djkt
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted by 30 people daforerog hzoltan idonaldson kshameer operon guhjy druvus n00c dnewburger djkt mmartin baker-group sobolevnrm jfr psique BergmanLab cisevol GeeSharpMinor neils Bioinformatics dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted by 36 people joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson KCL & UCL Bioinformatics rschulz Bioinformatics dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils
	What is a gene, post-ENCODE? History and updated definition [My Copy] Genome Research, Vol. 17, No. 6. (June 2007), pp. 669-681. by Mark B. Gerstein, Can Bruce, Joel S. Rozowsky, et al.Deyou Zheng, Jiang Du, Jan O. Korbel, Olof Emanuelsson, Zhengdong D. Zhang, Sherman Weissman, Michael Snyder posted by 43 people idoerg Zephyrus daforerog daveGerrard Yanno inesdesantiago kentz ddcttrl bertelsen tmarscha thegoose2 burak guhjy carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Bioinformatics EisenLab G4ID Genetics-of-Gambling Minty hpaces tharris altotor mjoach
	GIMSAN: a Gibbs motif finder with significance analysis [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2256-2257. by Patrick Ng, Uri Keich posted by 4 people tmarscha nuin idonaldson GeeSharpMinor
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted by 17 people Yanno jfr jandot ewilban1 BergmanLab polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz paszkows
	Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000311. by Chun Ye, Simon J. Galbraith, James C. Liao, Eleazar Eskin posted by 6 people TRHvidsten svenrahmann dolchan idonaldson rdiaz roys
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti Tammi posted by 23 people druvus orzenil humburg hzoltan biovils stubrown cthachuk GustavoLacerda n00c darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan Bioinformatics sleepingcell neils magusina
	Network biology: understanding the cell's functional organization [My Copy] Nature Reviews Genetics In Nat Rev Genet, Vol. 5, No. 2. (01 February 2004), pp. 101-113. by Albert-Laszlo Barabasi, Zoltan N. Oltvai posted by 29 people joebilkobailey ess30 poirel tonamswish asadrahman tmarscha cn_honjyo behindtherabbit yangjustinc lawraga sschurer hadesnumb cswinburne babakap carlk pkm daforerog diamantis okarsligil bayesian tny mmt grahamc mirzazadeh lpfernandes karfunkel Bioinformatics vietanh0 nolodie
	Many-core algorithms for statistical phylogenetics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1370-1376. by Marc A. Suchard, Andrew Rambaut posted by 11 people mlangill druvus nuin AlexBateman bmajoros iSEEM djkt jmeppley svenrahmann rdiaz Neeperando
	Getting Started in Computational Immunology [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000128. by Steven H. Kleinstein posted by 16 people tomhebbron svenrahmann VGreiff akraemer najwvandijk Roswell Cancer Crosstalk Zephyrus nuin Bioinformatics barry reyez dakelley GeeSharpMinor rebeccamancy AbnerCYH jjray
	Next-generation DNA sequencing techniques [My Copy] New Biotechnology, Vol. 25, No. 4. (03 April 2009), pp. 195-203. by Wilhelm .. Ansorge, posted by 10 people darian manduca inesdesantiago heliopais natstreet druvus guhjy n00c svenrahmann ImranRaoufMalik
	Bioinformatics for next generation sequencing. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 4. (15 February 2009), pp. 429-429. by Alex Bateman, John Quackenbush posted by 9 people seb1 n00c dolchan svenrahmann idoerg orzenil druvus floatingpoint djkt
	Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis [My Copy] Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536. by Ryan Lister, Ronan C. O'Malley, Julian Tonti-Filippini, et al.Brian D. Gregory, Charles C. Berry, Harvey A. Millar, Joseph R. Ecker posted by 8 people natstreet mmartin kengg caseybrown megraw GeeSharpMinor jmjimenez gdb
	Benchmarking regulatory network reconstruction with GRENDEL [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 801-807. by Brian C. Haynes, Michael R. Brent posted by 8 people dolchan tmarscha tonamswish TRHvidsten APRegier roys rdiaz imina
	Power-law distributions in empirical data [My Copy] SIAM Review, Vol. 51, No. 4. (2 Feb 2009), 661. by Aaron Clauset, Cosma R. Shalizi, M. E. J. Newman posted by 70 people AaronMcDaid rogerdboyle lawraga ulmer aheineike danilov Diego_Prada kinop jaia lehalle jsaramak ccthomas vagoskar acrmartins krisl makrehchi jotwin quianominorleo akuhn arsyed coccoinomane janpaniev pawelsobko alexv Borelli tmarscha dpf ReadingLab garyfeng kubyaddi tnhh kaarsinogen dmeister ddahlem vtraag mattjb jfelipe yonyoni laurobeltrao mmcgloho galyardt gconaldi egh ansobol lfriedl jjray itmeson dumpa madhadron sdvillal bigbossman merazzle xpontus muraken sugarexpletive jaspervoskuilen tomhebbron gi0rgi0ne amoebe jasonn pprett EntrepreneurialRisks AbnerCYH halukbingol anhlc stringertheory deanmalmgren jyew nazareno diamantis
	A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis [My Copy] Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785. by Thomas A. Down, Vardhman K. Rakyan, Daniel J. Turner, et al.Paul Flicek, Heng Li, Eugene Kulesha, Stefan Graf, Nathan Johnson, Javier Herrero, Eleni M. Tomazou, Natalie P. Thorne, Liselotte Backdahl, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Richard Durbin, Simon Tavare, Stephan Beck posted by 11 people fabrices druvus timhubbard KCL & UCL Bioinformatics mmartin sebastien_vigneau rschulz bpcusack slevy03 oelemento guhjy
	Markov clustering versus affinity propagation for the partitioning of protein interaction graphs [My Copy] BMC Bioinformatics, Vol. 10 (30 March 2009), 99. by Jim Vlasblom, Shoshana J. Wodak posted by 3 people swp09 lwaldron svenrahmann
	Efficient construction of maximal and minimal representations of motifs of a string☆ [My Copy] Theoretical Computer Science (24 March 2009) by François Nicolas, Veli Mäkinen, Esko Ukkonen posted by 2 people tmarscha svenrahmann
	“Genes” [My Copy] Theory in Biosciences, Vol. 127, No. 3. (1 August 2008), pp. 215-221. by Sonja Prohaska, Peter Stadler posted by 2 people tmarscha mmartin
	Five Determinisation Algorithms [My Copy] Implementation and Applications of Automata (2008), pp. 161-170. by Rob van Glabbeek, Bas Ploeger posted by 2 people tmarscha gkatsi
	GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences [My Copy] Pattern Recognition in Bioinformatics (2008), pp. 448-459. by Chen Chen, Bertil Schmidt, Liu Weiguo, Wolfgang Müller-Wittig posted by 1 person tmarscha
	Introduction to the Theory of Computation, Second Edition [My Copy] (15 February 2005) by Michael Sipser posted by 7 people MSukruKuran mchinen jjrohal sdvillal tmarscha mmeteo jasmithoffice
	Nonnegative Principal Component Analysis for Cancer Molecular Pattern Discovery [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Xiaoxu Han posted by 1 person tmarscha
	Analytic Combinatorics [My Copy] (31 January 2009) by Philippe Flajolet, Robert Sedgewick posted by 1 person tmarscha
	Automata and Computability (Undergraduate Texts in Computer Science) [My Copy] (28 December 1999) by Dexter C. Kozen posted by 3 people tmarscha svozil BarrosH
	Flexible Pattern Matching in Strings [My Copy] (15 June 2002) by Gonzalo Navarro, Mathieu Raffinot posted by 2 people tmarscha karlh
	Finding compact structural motifs [My Copy] Theoretical Computer Science (27 March 2009) by Dongbo Bu, Ming Li, Shuai C. Li, Jianbo Qian, Jinbo Xu posted by 1 person tmarscha
	An improved algorithm for matching biological sequences. [My Copy] J Mol Biol, Vol. 162, No. 3. (15 December 1982), pp. 705-708. by O. Gotoh posted by 6 people rabio mmartin sebk vavi adijr jofiel
	Molecular Biology of the Cell [My Copy] (31 November 2007) by Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Keith Roberts, Peter Walter posted by 5 people sergioschr sanjaypatel tmarscha devinli subhjap
	KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor. [My Copy] Bioinformatics (Oxford, England) (23 March 2009) by Jitao David D. Zhang, Stefan Wiemann posted by 3 people svenrahmann brianb neils
	A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. [My Copy] J Mol Biol, Vol. 197, No. 4. (20 October 1987), pp. 723-728. by M. S. Waterman, M. Eggert posted by 2 people mmartin rabio
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted by 5 people torfinnnome jmeppley robsyme neils svenrahmann
	A cache-friendly truncated FFT [My Copy] Theoretical Computer Science (24 March 2009) by David Harvey posted by 1 person svenrahmann
	On the Hopcroft’s minimization technique for DFA and DFCA☆ [My Copy] Theoretical Computer Science (05 March 2009) by Andrei Păun, Mihaela Păun, Alfonso Rodríguez-Patón posted by 1 person svenrahmann
	On the similarity metric and the distance metric☆ [My Copy] Theoretical Computer Science, Vol. 410, No. 24-25. (28 May 2009), pp. 2365-2376. by Shihyen Chen, Bin Ma, Kaizhong Zhang posted by 3 people jengeldk caicai svenrahmann
	Polynomial summaries of positive semidefinite kernels [My Copy] Theoretical Computer Science, Vol. 410, No. 19. (28 April 2009), pp. 1847-1862. by Kilho Shin, Tetsuji Kuboyama posted by 1 person svenrahmann
	The simultaneous consecutive ones problem [My Copy] Theoretical Computer Science (29 December 2008) by Marcus Oswald, Gerhard Reinelt posted by 1 person svenrahmann
	Fast neighbor joining☆ [My Copy] Theoretical Computer Science (29 December 2008) by Isaac Elias, Jens Lagergren posted by 1 person svenrahmann
	kk-difference matching in amortized linear time for all the words in a text [My Copy] Theoretical Computer Science, Vol. 410, No. 8-10. (01 March 2009), pp. 983-987. by C. Pizzi posted by 1 person svenrahmann
	Genetic Networks and Soft Computing [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Sushmita Mitra, Ranajit Das, Yoichi Hayashi posted by 1 person tmarscha
	Genome-Wide Search for Local DNA Segments with Anomalous GC-Content [My Copy] Journal of Computational Biology, Vol. 16, No. 4. (2009), pp. 555-564. by Andrey Ilatovskiy, Michael Petukhov posted by 1 person svenrahmann
	Suffix Arrays: A New Method for On-Line String Searches [My Copy] SIAM Journal on Computing, Vol. 22, No. 5. (1993), pp. 935-948. by Udi Manber, Gene Myers posted by 1 person svenrahmann
	Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete [My Copy] Hum. Mol. Genet. (17 February 2009), ddp054. by Michael Zeschnigk, Marcel Martin, Gisela Betzl, et al.Andreas Kalbe, Caroline Sirsch, Karin Buiting, Stephanie Gross, Epameinondas Fritzilas, Bruno Frey, Sven Rahmann, Bernhard Horsthemke posted by 1 person mmartin
	Re-describing an algorithm by Hopcroft [My Copy] Theoretical Computer Science, Vol. 250, No. 1-2. (6 January 2001), pp. 333-363. by T. Knuutila posted by 1 person tmarscha
	From genome to epigenome. [My Copy] Hum Mol Genet, Vol. 14 Spec No 1 (15 April 2005) by A. Murrell, V. K. Rakyan, S. Beck posted by 3 people selimuz mmartin vplagnol
	Practical Strategies for Discovering Regulatory DNA Sequence Motifs [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (28 April 2006), e36. by Kenzie D. MacIsaac, Ernest Fraenkel posted by 21 people bsamal Jporci leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin bryankr ana chad_davis balicea hggr GustavoLacerda structural_bioinformatics Bioinformatics svdate kristallreiner
	An introduction to ROC analysis [My Copy] Pattern Recogn. Lett. In ROC Analysis in Pattern Recognition, Vol. 27, No. 8. (June 2006), pp. 861-874. by Tom Fawcett posted by 43 people JALumley singhsh TLVincent module qluo q_w_e_r_t_y makrehchi Borelli mthomure sbarthelme jjrodriguez cen4ik jmetzen MosesCheckley ldietz vavi dquest sdvillal xiaoyan2006 dwf camu schlauchi vmoa drivard nklee imrchen kmdaily gsiwo Bioinformatics Crypto VT_DLRL Randomness LIVIA tgyork idonaldson BergmanLab napvasconcelos cdeane haiyeong AbnerCYH isimpson guhjy nherveg
	Informative priors based on transcription factor structural class improve de novo motif discovery [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e384-392. by Leelavati Narlikar, Raluca Gordan, Uwe Ohler, Alexander J. Hartemink posted by 7 people frohike megraw maximilianh dquest nklee idonaldson yevishere
	DISCOVER: a feature-based discriminative method for motif search in complex genomes [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i321-329. by Wenjie Fu, Pradipta Ray, Eric P. Xing posted by 8 people bsamal guhjy dquest Bioinformatics - CRUK Stew idonaldson thegoose maximilianh
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted by 23 people torfinnnome bsamal jwfoley ewilban1 nklee bertelsen Mycology stajich smiddha clearbluespring WanderingAengus polivares ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh
	Statistical significance of cis-regulatory modules [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Dustin Schones, Andrew Smith, Michael Zhang posted by 12 people druvus indigoviolet dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee EisenLab xili03 sconlan
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted by 26 people provero pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci EisenLab maximilianh cisevol cis-regulatory-evolution njcitulike emptyhb nklee anka
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted by 15 people bsamal venancio aalibes fenghezi idonaldson BergmanLab daveGerrard megraw scjparker maximilianh djkt isimpson Bioinformatics - CRUK Stew druvus
	An efficient method for statistical significance calculation of transcription factor binding sites. [My Copy] Bioinformation, Vol. 2, No. 5. (2007), pp. 169-174. by Z. Qian, L. Lu, L. Qi, Y. Li posted by 6 people bsamal nklee maximilianh idonaldson Motif Discovery isimpson
	CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 495. by Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan J. van Ommen, Johan T. den Dunnen, Peter A. 't Hoen posted by 12 people bsamal farhat Ensembl Compara citations avilella heliopais lptolik nklee nuin GustavoLacerda natstreet maximilianh druvus
	Positional distribution of human transcription factor binding sites. [My Copy] Nucleic acids research (25 October 2008) by Mark Koudritsky, Eytan Domany posted by 13 people bsamal daforerog jfr jforman SIMR bioinformatics ghattem BenosLab barriot fpattyn nklee maximilianh idonaldson nuin
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted by 30 people oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci Bioinformatics microRNA Marcotte_Lab blobbybirdman UH - Computational Biology caseybrown emptyhb Myxo group dquest
	CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing. [My Copy] PLoS computational biology, Vol. 4, No. 6. (6 June 2008), e1000090. by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P. Xing posted by 9 people dquest emptyhb madreach xili03 djkt cisevol cis-regulatory-evolution Stew Ema
	Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (7 September 2007), e175. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted by 15 people Jporci druvus treangen carlk operon dpollard dquest djkt zwang cabbagezs EisenLab heliopais blobbybirdman cis-regulatory-evolution Myxo group
	Detecting species-site dependencies in large multiple sequence alignments. [My Copy] Nucleic acids research, Vol. 37, No. 18. (6 October 2009), pp. 5959-5968. by Roland Schwarz, Philipp N. Seibel, Sven Rahmann, et al.Christoph Schoen, Mirja Huenerberg, Clemens Müller-Reible, Thomas Dandekar, Rachel Karchin, Jörg Schultz, Tobias Müller posted by 4 people Orengo Group Journal Picks davidalee svenrahmann operon
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald Zack, Jiang Qian posted by 11 people roys isimpson guhjy chad_davis mikaelhuss nklee maximilianh idonaldson njcitulike bootsy snow_dragon
	A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling [My Copy] Bioinformatics, Vol. 17, No. 12. (1 December 2001), pp. 1113-1122. by Gert Thijs, Magali Lescot, Kathleen Marchal, et al.Stephane Rombauts, Bart De Moor, Pierre Rouze, Yves Moreau posted by 8 people lusk raylim Mehlhorn lyongu dquest natstreet nklee xili03
	LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731. by M. Brudno, C. B. Do, G. M. Cooper, et al.M. F. Kim, E. Davydov, E. D. Green, A. Sidow, S. Batzoglou, posted by 16 people treangen operon balajis dpollard xwbcn dquest adepace hdopazo lusk Garamonfok adijr natstreet nklee EisenLab Neeperando kcrawlik
	Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W247-252. by Federico Zambelli, Graziano Pesole, Giulio Pavesi posted by 7 people bsamal druvus natstreet idonaldson nklee nuin isimpson
	OSCAR: One-class SVM for accurate recognition of cis-elements [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2823-2828. by Bo Jiang, Michael Q. Zhang, Xuegong Zhang posted by 9 people bsamal suizifish cassj tmmurali chad_davis cabbagezs maximilianh idonaldson isimpson
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted by 20 people cerca ilyashl TRHvidsten leelarcombe kieran101 ana brant cwbrown aswin cjeans zwang cabbagezs nklee EisenLab maximilianh idonaldson sb_journal_club kristen barwil Motif Discovery
	DNA binding sites: representation and discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 1. (January 2000), pp. 16-23. by G. D. Stormo posted by 11 people yylin Bioinformatics - CRUK Stew emptyhb isimpson kaarsinogen mbj dquest lusk ezralanglois xili03
	Evolution of genes and genomes on the Drosophila phylogeny. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 203-218. by Drosophila 12 Genomes Consortium, Andrew G. Clark, Michael B. Eisen, et al.Douglas R. Smith, Casey M. Bergman, Brian Oliver, Therese A. Markow, Thomas C. Kaufman, Manolis Kellis, William Gelbart, Venky N. Iyer, Daniel A. Pollard, Timothy B. Sackton, Amanda M. Larracuente, Nadia D. Singh, Jose P. Abad, Dawn N. Abt, Boris Adryan, Montserrat Aguade, Hiroshi Akashi, Wyatt W. Anderson, Charles F. Aquadro, David H. Ardell, Roman Arguello, Carlo G. Artieri, Daniel A. Barbash, Daniel Barker, Paolo Barsanti, Phil Batterham, Serafim Batzoglou, Dave Begun, Arjun Bhutkar, Enrico Blanco, Stephanie A. Bosak, Robert K. Bradley, Adrianne D. Brand, Michael R. Brent, Angela N. Brooks, Randall H. Brown, Roger K. Butlin, Corrado Caggese, Brian R. Calvi, A. Bernardo de Carvalho, Anat Caspi, Sergio Castrezana, Susan E. Celniker, Jean L. 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