Xavier Deupi's Top Recommendations

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	Similar Structures and Shared Switch Mechanisms of the beta 2-Adrenoceptor and the Parathyroid Hormone Receptor. Zn(II) BRIDGES BETWEEN HELICES III AND VI BLOCK ACTIVATION [My Copy] J. Biol. Chem., Vol. 274, No. 24. (11 June 1999), pp. 17033-17041. by Soren P. Sheikh, Jean-Pierre Vilardarga, Thomas J. Baranski, et al.Olivier Lichtarge, Taroh Iiri, Elaine C. Meng, Robert A. Nissenson, Henry R. Bourne posted by 2 people merj IrinaMoreira
	Positioning of proteins in membranes: a computational approach. [My Copy] Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1318-1333. by A. L. Lomize, I. D. Pogozheva, M. A. Lomize, H. I. Mosberg posted by 3 people thaliana rsandie sebk
	Energetics and stability of transmembrane helix packing: A replica-exchange simulation with a knowledge-based membrane potential [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 62, No. 2. (2006), pp. 539-552. by Zhong Chen, Ying Xu posted by 1 person thaliana
	E(z), a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: derivation and applications to determining the orientation of transmembrane and interfacial helices. [My Copy] J Mol Biol, Vol. 366, No. 2. (16 February 2007), pp. 436-448. by A. Senes, D. C. Chadi, P. B. Law, R. F. Walters, V. Nanda, W. F. Degrado posted by 2 people hc5428 thaliana
	Folding Amphipathic Helices Into Membranes: Amphiphilicity Trumps Hydrophobicity [My Copy] Journal of Molecular Biology, Vol. 370, No. 3. (13 July 2007), pp. 459-470. by Monica Fernandez-Vidal, Sajith Jayasinghe, Alexey S. Ladokhin, Stephen H. White posted by 1 person thaliana
	A deterministic algorithm for constrained enumeration of transmembrane protein folds [My Copy] Computational Biology and Chemistry, Vol. 29, No. 2. (April 2005), pp. 143-150. by Michael W. Brown, Jean-Loup Faulon, Ken Sale posted by 1 person thaliana
	Exploring the conformational space of membrane protein folds matching distance constraints [My Copy] Protein Sci, Vol. 12, No. 8. (1 August 2003), pp. 1750-1761. by Jean-Loup Faulon, Ken Sale, Malin Young posted by 1 person thaliana
	A method for ?-helical integral membrane protein fold prediction [My Copy] Proteins: Structure, Function, and Genetics, Vol. 18, No. 3. (1994), pp. 281-294. by William R. Taylor, David T. Jones, Michael N. Green posted by 1 person thaliana
	Setting up and running molecular dynamics simulations of membrane proteins [My Copy] Methods In Structural Biology of Membrane Proteins, Vol. 41, No. 4. (April 2007), pp. 475-488. by Christian Kandt, Walter L. Ash, Peter posted by 1 person thaliana
	Peptides as transmembrane segments: Decrypting the determinants for helix-helix interactions in membrane proteins [My Copy] Peptide Science, Vol. 88, No. 2. (2007), pp. 217-232. by Arianna Rath, Rachel M. Johnson, Charles M. Deber posted by 2 people thaliana viktor21614
	Recurring Local Sequence Motifs in Proteins [My Copy] Journal of Molecular Biology, Vol. 251, No. 1. (4 August 1995), pp. 176-187. by Karen F. Han, David Baker posted by 1 person thaliana
	General method for calculating helical parameters of polymer chains from bond lengths, bond angles, and internal-rotation angles [My Copy] Biopolymers, Vol. 5, No. 7. (1967), pp. 673-679. by Hiromu Sugeta, Tatsuo Miyazawa posted by 1 person thaliana
	The Flexing/Twirling Helix: Exploring the Flexibility about Molecular Hinges Formed by Proline and Glycine Motifs in Transmembrane Helices [My Copy] J. Phys. Chem. B, Vol. 107, No. 2. (16 January 2003), pp. 627-636. by J. N. Bright, M. S. P. Sansom posted by 1 person thaliana
	Assembly of transmembrane helices of simple polytopic membrane proteins from sequence conservation patterns [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 4. (2006), pp. 895-905. by Yungki Park, Volkhard Helms posted by 1 person thaliana
	On the thermodynamic stability of a charged arginine side chain in a transmembrane helix [My Copy] PNAS, Vol. 104, No. 12. (20 March 2007), pp. 4943-4948. by Sudha Dorairaj, Toby W. Allen posted by 3 people paulschlesinger thaliana agrossfield
	Structural and functional characterization of pi bulges and other short intrahelical deformations. [My Copy] Structure, Vol. 12, No. 1. (January 2004), pp. 133-144. by J. P. Cartailler, H. Luecke posted by 1 person thaliana
	Proline kinks in transmembrane alpha-helices. [My Copy] Journal of molecular biology, Vol. 218, No. 3. (5 April 1991), pp. 499-503. by G. von Heijne posted by 2 people carlosjavierna thaliana
	Mutagenesis data in the automated prediction of transmembrane helix dimers [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 2. (2007), pp. 375-384. by Douglas G. Metcalf, Peter B. Law, William F. Degrado posted by 1 person thaliana
	Near-native structure refinement using in vacuo energy minimization [My Copy] PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3177-3182. by Christopher M. Summa, Michael Levitt posted by 3 people mijam thaliana hmk
	Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations [My Copy] PNAS, Vol. 104, No. 8. (20 February 2007), pp. 2631-2636. by Peter J. Bond, Mark S. Sansom posted by 2 people thaliana choonpeng
	Prediction and simulation of motion in pairs of transmembrane alpha-helices. [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007) by A. Enosh, S. J. Fleishman, N. Ben-Tal, D. Halperin posted by 1 person thaliana
	An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 6. (15 March 2007), pp. 687-693. by K. Ye, W. A. Kosters, A. P. Ijzerman posted by 3 people wowalz thaliana birzele
	Structural details (kinks and non-alpha conformations) in transmembrane helices are intrahelically determined and can be predicted by sequence pattern descriptors. [My Copy] Nucleic Acids Res, Vol. 31, No. 15. (1 August 2003), pp. 4625-4631. by I. Rigoutsos, P. Riek, R. M. Graham, J. Novotny posted by 1 person thaliana
	Non-alpha-helical elements modulate polytopic membrane protein architecture. [My Copy] J Mol Biol, Vol. 306, No. 2. (16 February 2001), pp. 349-362. by R. P. Riek, I. Rigoutsos, J. Novotny, R. M. Graham posted by 1 person thaliana
	A backbone-based theory of protein folding [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16623-16633. by George D. Rose, Patrick J. Fleming, Jayanth R. Banavar, Amos Maritan posted by 8 people carlosjavierna flbarroso edws dkoveal thaliana j3xucite choonpeng marck
	Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2):229] [My Copy] Bioinformatics, Vol. 14, No. 1. (1 February 1998), pp. 55-67. by I. Rigoutsos, A. Floratos posted by 8 people stharward wowalz windman83 thaliana okarsligil dquest Bioinformatics heliopais
	Prediction of structure and function of G protein-coupled receptors. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12622-12627. by N. Vaidehi, W. B. Floriano, R. Trabanino, et al.S. E. Hall, P. Freddolino, E. J. Choi, G. Zamanakos, W. A. Goddard posted by 4 people apaydin thaliana allanlo superpyrin
	A method for structural analysis of -helices of membrane proteins [My Copy] Journal of Molecular Modeling, Vol. 10, No. 5-6. (December 2004), pp. 393-398. by Mohapatra, Pranab, Khamari, Adikanda, Raval, Mukesh posted by 1 person thaliana
	Towards genome-scale structure prediction for transmembrane proteins. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 465-475. by N. Hurwitz, M. Pellegrini-Calace, D. T. Jones posted by 4 people thaliana marcius BioinfoCIPF SGU-CIPF
	Numerical Recipes in FORTRAN 77: The Art of Scientific Computing (v. 1) [My Copy] (25 September 1992) by William H. Press, Brian P. Flannery, Saul A. Teukolsky, William T. Vetterling posted by 3 people nilsma priviter thaliana
	Classical Mechanics [My Copy] (26 June 2001) by Herbert Goldstein, Charles P. Poole posted by 3 people 6rheology thaliana robertoalamino
	Molecular Biology of the Cell [Book and CD-ROM] [My Copy] (30 March 2002) by Bruce Alberts, Et Al posted by 4 people thaliana jberro fhaenel Projet_ENSIMAG
	An Introduction to Statistical Thermodynamics [My Copy] (01 January 1987) by Terrell L. Hill posted by 6 people charris5 chiufanlee thaliana ssomani structure-bii mikaellund
	Statistical Mechanics [My Copy] (16 June 2000) by Donald A. Mcquarrie posted by 1 person thaliana
	The self-organizing map [My Copy] Proceedings of the IEEE, Vol. 78, No. 9. (06 August 2002), pp. 1464-1480. by T. Kohonen posted by 14 people pascanur rockelegancy thaliana mvoong sjgaller dominikschmidt rodrhern Context-driven-testers Desgin-by-Contract uchile_int_computacional kenji4569 softsimu napvasconcelos thefillm
	A generic motif discovery algorithm for sequential data [My Copy] Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 21-28. by Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory N. Stephanopoulos posted by 4 people wowalz windman83 bryankr thaliana
	Global properties of the mapping between local amino acid sequence and local structure in proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 93, No. 12. (11 June 1996), pp. 5814-5818. by K. F. Han, D. Baker posted by 3 people thaliana Einat structural_bioinformatics
	A computer modeling postulated mechanism for angiotensin II receptor activation. [My Copy] J Protein Chem, Vol. 14, No. 5. (July 1995), pp. 381-398. by M. P. Joseph, B. Maigret, J. C. Bonnafous, J. Marie, H. A. Scheraga posted by 1 person thaliana
	Modeling the G-protein-coupled neuropeptide Y Y1 receptor agonist and antagonist binding sites. [My Copy] Protein Eng, Vol. 10, No. 2. (February 1997), pp. 109-117. by P. Du, J. A. Salon, J. A. Tamm, et al.C. Hou, W. Cui, M. W. Walker, N. Adham, D. S. Dhanoa, I. Islam, P. J. Vaysse, B. Dowling, Y. Shifman, N. Boyle, H. Rueger, T. Schmidlin, Y. Yamaguchi, T. A. Branchek, R. L. Weinshank, C. Gluchowski posted by 1 person thaliana
	Bacteriorhodopsin is an inside-out protein. [My Copy] Proc Natl Acad Sci U S A, Vol. 77, No. 10. (October 1980), pp. 5894-5898. by D. M. Engelman, G. Zaccai posted by 1 person thaliana
	Hydrophobic organization of membrane proteins. [My Copy] Science, Vol. 245, No. 4917. (4 August 1989), pp. 510-513. by D. C. Rees, L. DeAntonio, D. Eisenberg posted by 1 person thaliana
	Analysis of membrane and surface protein sequences with the hydrophobic moment plot. [My Copy] J Mol Biol, Vol. 179, No. 1. (15 October 1984), pp. 125-142. by D. Eisenberg, E. Schwarz, M. Komaromy, R. Wall posted by 2 people thaliana ashaytan
	Are membrane proteins "inside-out" proteins? [My Copy] Proteins, Vol. 36, No. 1. (1 July 1999), pp. 135-143. by T. J. Stevens, I. T. Arkin posted by 2 people thaliana babakap
	The helical hydrophobic moment: a measure of the amphiphilicity of a helix. [My Copy] Nature, Vol. 299, No. 5881. (23 September 1982), pp. 371-374. by D. Eisenberg, R. M. Weiss, T. C. Terwilliger posted by 1 person thaliana
	A simple method for displaying the hydropathic character of a protein. [My Copy] Journal of molecular biology, Vol. 157, No. 1. (5 May 1982), pp. 105-132. by J. Kyte, R. F. Doolittle posted by 9 people barmak7282 hryk thaliana chad_davis dgront medic0747 ashaytan Ema bicko
	Structural features of transmembrane helices. [My Copy] FEBS Lett, Vol. 559, No. 1-3. (13 February 2004), pp. 145-151. by P. W. Hildebrand, R. Preissner, C. Frömmel posted by 1 person thaliana
	Helical membrane proteins: diversity of functions in the context of simple architecture. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 370-376. by I. Ubarretxena-Belandia, D. M. Engelman posted by 1 person thaliana
	Translocons, thermodynamics, and the folding of membrane proteins. [My Copy] FEBS Lett, Vol. 555, No. 1. (27 November 2003), pp. 116-121. by S. H. White posted by 1 person thaliana
	The progress of membrane protein structure determination. [My Copy] Protein Sci, Vol. 13, No. 7. (July 2004), pp. 1948-1949. by S. H. White posted by 4 people krapnik r2s2 thaliana happy_manatee
	Experimental and computational studies of determinants of membrane-protein folding. [My Copy] Curr Opin Chem Biol, Vol. 6, No. 6. (December 2002), pp. 878-884. by J. Liang posted by 1 person thaliana
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted by 8 people mijam granujilla bullli502 nigham thaliana dgront JimmyMac saunders
	Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC. [My Copy] J Comput Chem, Vol. 26, No. 14. (15 November 2005), pp. 1472-1486. by M. Nanias, M. Chinchio, S. Ołdziej, C. Czaplewski, H. A. Scheraga posted by 1 person thaliana
	Clustering of low-energy conformations near the native structures of small proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 19. (15 September 1998), pp. 11158-11162. by D. Shortle, K. T. Simons, D. Baker posted by 9 people barry thaliana dgront joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Properties of integral membrane protein structures: derivation of an implicit membrane potential. [My Copy] Proteins, Vol. 59, No. 2. (1 May 2005), pp. 252-265. by M. B. Ulmschneider, M. S. Sansom, A. Di Nola posted by 1 person thaliana
	Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins. [My Copy] Proteins, Vol. 59, No. 3. (15 May 2005), pp. 496-509. by L. Adamian, V. Nanda, W. F. DeGrado, J. Liang posted by 2 people hc5428 thaliana
	A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins. [My Copy] Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1822-1835. by T. Beuming, H. Weinstein posted by 2 people thaliana allanlo
	Molecular modeling of ion channels: structural predictions. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 1. (February 2003), pp. 150-156. by A. Giorgetti, P. Carloni posted by 1 person thaliana
	PREDICT modeling and in-silico screening for G-protein coupled receptors. [My Copy] Proteins, Vol. 57, No. 1. (1 October 2004), pp. 51-86. by S. Shacham, Y. Marantz, S. Bar-Haim, et al.O. Kalid, D. Warshaviak, N. Avisar, B. Inbal, A. Heifetz, M. Fichman, M. Topf, Z. Naor, S. Noiman, O. M. Becker posted by 1 person thaliana
	$My PDF waldisp&\#252;hl_05_modeling.pdf$ Modeling and predicting all-&\#945; transmembrane proteins including helix-helix pairing [My Copy] Theor. Comput. Sci., Vol. 335, No. 1. (May 2005), pp. 67-92. by J&\#233;r&\#244;me Waldisp&\#252;hl, Jean-Marc Steyaert posted by 1 person thaliana
	Structure prediction of small transmembrane helix bundles. [My Copy] J Mol Graph Model, Vol. 23, No. 1. (September 2004), pp. 99-110. by K. E. Gottschalk posted by 2 people thaliana allanlo
	A simple method for modeling transmembrane helix oligomers. [My Copy] J Mol Biol, Vol. 329, No. 4. (13 June 2003), pp. 831-840. by S. Kim, A. K. Chamberlain, J. U. Bowie posted by 1 person thaliana
	Novel scoring function for modeling structures of oligomers of transmembrane alpha-helices. [My Copy] Proteins, Vol. 57, No. 3. (15 November 2004), pp. 577-585. by Y. Park, M. Elsner, R. Staritzbichler, V. Helms posted by 1 person thaliana
	Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 891-907. by L. Adamian, J. Liang posted by 1 person thaliana
	A new method to model membrane protein structure based on silent amino acid substitutions. [My Copy] Proteins, Vol. 44, No. 3. (15 August 2001), pp. 370-375. by J. A. Briggs, J. Torres, I. T. Arkin posted by 1 person thaliana
	Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban. [My Copy] Nat Struct Biol, Vol. 2, No. 2. (February 1995), pp. 154-162. by P. D. Adams, I. T. Arkin, D. M. Engelman, A. T. Brünger posted by 1 person thaliana
	Optimal bundling of transmembrane helices using sparse distance constraints. [My Copy] Protein Sci, Vol. 13, No. 10. (October 2004), pp. 2613-2627. by K. Sale, J. L. Faulon, G. A. Gray, J. S. Schoeniger, M. M. Young posted by 1 person thaliana
	An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data. [My Copy] Biophys J, Vol. 87, No. 5. (November 2004), pp. 3448-3459. by S. J. Fleishman, S. Harrington, R. A. Friesner, B. Honig, N. Ben-Tal posted by 1 person thaliana
	Transmembrane helix predictions revisited. [My Copy] Protein Sci, Vol. 11, No. 12. (December 2002), pp. 2774-2791. by C. P. Chen, A. Kernytsky, B. Rost posted by 1 person thaliana
	The GxxxG motif: a framework for transmembrane helix-helix association. [My Copy] J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 911-919. by W. P. Russ, D. M. Engelman posted by 1 person thaliana
	Interaction of transmembrane helices by a knobs-into-holes packing characteristic of soluble coiled coils. [My Copy] Proteins, Vol. 31, No. 2. (1 May 1998), pp. 150-159. by D. Langosch, J. Heringa posted by 1 person thaliana
	Sequence motifs, polar interactions and conformational changes in helical membrane proteins. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 4. (August 2003), pp. 412-417. by A. R. Curran, D. M. Engelman posted by 1 person thaliana
	Comparison of helix interactions in membrane and soluble alpha-bundle proteins. [My Copy] Biophys J, Vol. 82, No. 5. (May 2002), pp. 2720-2736. by M. Eilers, A. B. Patel, W. Liu, S. O. Smith posted by 1 person thaliana
	Internal packing of helical membrane proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 11. (23 May 2000), pp. 5796-5801. by M. Eilers, S. C. Shekar, T. Shieh, S. O. Smith, P. J. Fleming posted by 2 people hc5428 thaliana
	Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions. [My Copy] J Mol Biol, Vol. 343, No. 4. (29 October 2004), pp. 799-804. by D. Schneider, D. M. Engelman posted by 1 person thaliana
	How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles. [My Copy] Protein Sci, Vol. 12, No. 4. (April 2003), pp. 647-665. by W. F. DeGrado, H. Gratkowski, J. D. Lear posted by 2 people thaliana sebk
	Rendezvous in a membrane: close packing, hydrogen bonding, and the formation of transmembrane helix oligomers. [My Copy] FEBS Lett, Vol. 577, No. 1-2. (5 November 2004), pp. 5-8. by D. Schneider posted by 1 person thaliana
	Helical packing patterns in membrane and soluble proteins. [My Copy] Biophys J, Vol. 87, No. 6. (December 2004), pp. 4075-4086. by M. Gimpelev, L. R. Forrest, D. Murray, B. Honig posted by 2 people kgutwin thaliana
	Membrane protein folding and stability: physical principles. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 28 (1999), pp. 319-365. by S. H. White, W. C. Wimley posted by 2 people thaliana ashaytan
	Helical membrane protein folding, stability, and evolution. [My Copy] Annu Rev Biochem, Vol. 69 (2000), pp. 881-922. by J. L. Popot, D. M. Engelman posted by 1 person thaliana
	Membrane protein folding: beyond the two stage model. [My Copy] FEBS Lett, Vol. 555, No. 1. (27 November 2003), pp. 122-125. by D. M. Engelman, Y. Chen, C. N. Chin, et al.A. R. Curran, A. M. Dixon, A. D. Dupuy, A. S. Lee, U. Lehnert, E. E. Matthews, Y. K. Reshetnyak, A. Senes, J. L. Popot posted by 2 people hc5428 thaliana
	Snorkeling preferences foster an amino acid composition bias in transmembrane helices. [My Copy] J Mol Biol, Vol. 339, No. 2. (28 May 2004), pp. 471-479. by A. K. Chamberlain, Y. Lee, S. Kim, J. U. Bowie posted by 1 person thaliana
	Helix-bundle membrane protein fold templates. [My Copy] Protein Sci, Vol. 8, No. 12. (December 1999), pp. 2711-2719. by J. U. Bowie posted by 1 person thaliana
	Membrane protein folding and oligomerization: the two-stage model. [My Copy] Biochemistry, Vol. 29, No. 17. (1 May 1990), pp. 4031-4037. by J. L. Popot, D. M. Engelman posted by 1 person thaliana
	Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1 [My Copy] Journal of Molecular Biology, Vol. 305, No. 3. (19 January 2001), pp. 567-580. by Anders Krogh, Björn Larsson, Gunnar von Heijne, Erik L. L. Sonnhammer posted by 12 people azazello tfuji niallhaslam katholt thaliana bjorns andreasauerwein j3xucite happy_manatee massivemayhem twenta sebk
	Optimal potentials for predicting inter-helical packing in transmembrane proteins. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 342-349. by H. Dobbs, E. Orlandini, R. Bonaccini, F. Seno posted by 1 person thaliana
	A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices. [My Copy] J Mol Biol, Vol. 321, No. 2. (9 August 2002), pp. 363-378. by S. J. Fleishman, N. Ben-Tal posted by 1 person thaliana
	kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction. [My Copy] J Mol Biol, Vol. 294, No. 4. (10 December 1999), pp. 921-935. by Y. Pilpel, N. Ben-Tal, D. Lancet posted by 1 person thaliana
	A potential smoothing algorithm accurately predicts transmembrane helix packing. [My Copy] Nat Struct Biol, Vol. 6, No. 1. (January 1999), pp. 50-55. by R. V. Pappu, G. R. Marshall, J. W. Ponder posted by 1 person thaliana
	Folding in lipid membranes (FILM): A novel method for the prediction of small membrane protein 3D structures [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 4. (30 January 2003), pp. 537-545. by M. Pellegrini-Calace, A. Carotti, D. T. Jones posted by 2 people pansapiens thaliana
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions. [My Copy] Proteins, Vol. 52, No. 4. (1 September 2003), pp. 492-509. by L. R. Forrest, T. B. Woolf posted by 4 people thaliana marcius BioinfoCIPF SGU-CIPF
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted by 8 people dfdong rsaito cactus karbak thaliana fjc1 rabio granujilla
	Toward High-Resolution de Novo Structure Prediction for Small Proteins [My Copy] Science, Vol. 309, No. 5742. (16 September 2005), pp. 1868-1871. by Philip Bradley, Kira M. S. Misura, David Baker posted by 16 people ucbcjbm paddydu kgutwin BragilMassoud ana barry thaliana jwm vavi marcius gbart thamelry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins. [My Copy] Macromolecules, Vol. 9, No. 6. (c 1976), pp. 945-950. by S. Tanaka, H. A. Scheraga posted by 7 people ana thaliana dgront aengisch mcbla structural_bioinformatics Bioinformatics
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 50 people krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	Solid-state NMR in drug design and discovery for membrane-embedded targets [My Copy] Nature Reviews Drug Discovery, Vol. 4, No. 7. (01 July 2005), pp. 555-568. by Anthony Watts posted by 1 person thaliana
	Transmembrane helix prediction: a comparative evaluation and analysis. [My Copy] Protein Eng Des Sel, Vol. 18, No. 6. (June 2005), pp. 295-308. by J. M. Cuthbertson, D. A. Doyle, M. S. Sansom posted by 4 people Cortel thaliana Einat structural_bioinformatics
	Comparing protein-ligand docking programs is difficult. [My Copy] Proteins (3 June 2005) by Jason C C. Cole, Christopher W W. Murray, J Willem M W. Nissink, Richard D D. Taylor, Robin Taylor posted by 12 people flbarroso BragilMassoud dgruiz thaliana yongzhao sangeetha kzfm peprovy carlescorbi Bioinformatics TSRI_MGL insilicodrug
	A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (3 June 2005), pp. 285-289. by John Moult posted by 15 people timhubbard flbarroso mcbla ujh nigham thaliana warlock6x3 marcius ffranca j3xucite dgront granujilla BioinfoCIPF SGU-CIPF mingzhi
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted by 13 people mcbla ana aalibes thaliana okarsligil marcius duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF