Dandan's Top Recommendations

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	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted by 27 people hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz SIMR bioinformatics mcm polivares gdb ghattem yadadi djkt Mycology stajich mdperry fpattyn bcondon idonaldson caseybrown kengg
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted by 21 people hzoltan gbenson bozdagd adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet druvus caseybrown djkt wisdom_love umit Neeperando Stew
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted by 16 people hzoltan manduca jmcq natstreet n00c TRHvidsten poschm michaelbarton caseybrown myourshaw djkt jonathanjacobs Molecular Biology GeeSharpMinor guhjy semrich
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted by 26 people hzoltan bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi stajich Mycology semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted by 24 people cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown Bioinformatics dswan BergmanLab polivares orzenil natstreet iSEEM djkt jmcq n00c heliopais ppgardne Journal picks druvus
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. [My Copy] Nucleic acids research, Vol. 36, No. 21. (1 December 2008), e141. by Peter A. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan J. van Ommen, Johan T. den Dunnen posted by 25 people hzoltan GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed poschm stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz pengchy
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted by 22 people hzoltan jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 49 people cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted by 17 people guhjy gdb fenghezi tonamswish emptyhb caseybrown siebert sebastien_vigneau inesdesantiago djkt jjray strands Glires lp2 sandersl diaz0058 jbhiatt
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted by 16 people rshe n00c fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted by 15 people shikin sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (7 March 2008), pp. 393-403. by David S. Johnson, Wei Li, D. Benjamin Gordon, et al.Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu posted by 15 people fenghezi jfr kengg djkt xiaobeizhao cabbagezs idonaldson BergmanLab caseybrown magusina lp2 stajich Mycology gracio gdb
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted by 25 people pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci EisenLab maximilianh cisevol cis-regulatory-evolution njcitulike emptyhb nklee anka
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted by 18 people vingron ajaymalik fenghezi dpollard gpalidwor dchughes cwbrown djkt cjeans EisenLab G4ID Genetics-of-Gambling maximilianh cis-regulatory-evolution fpattyn caseybrown yevishere gdb
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted by 45 people Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet BergmanLab polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton Bioinformatics dswan reyez kshameer TRHvidsten djkt Journal picks ppgardne
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted by 33 people hzoltan agbiotec torfinnnome natstreet cthachuk Bioinformatics Core Service jforment GustavoLacerda adijr bozdagd stubrown BergmanLab polivares guhjy Orengo Group Journal Picks ollieredfernwork operon cassj adamjamesreid Bioinformatics - CRUK Stew jamselem Bioinformatics dswan Journal picks idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted by 38 people lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton BergmanLab polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon SIMR bioinformatics ghattem n00c Bioinformatics danmaclean Journal picks ppgardne nuin rschulz natstreet druvus humburg
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted by 19 people jwfoley hzoltan heliopais stubrown GustavoLacerda woodson8 ThomasDOtto Mycology stajich guhjy SIMR bioinformatics ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted by 31 people hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn BergmanLab cisevol danmaclean Journal picks timhubbard operon neils
	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted by 25 people hzoltan Zephyrus antonkratz bertelsen frohike natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza RockmanLab dpollard hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt Mycology stajich
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted by 32 people hzoltan jwfoley rsaito greg Chinnaiyan Lab mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga JLab cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada
	Variable Locus Length in the Human Genome Leads to Ascertainment Bias in Functional Inference For Noncoding Elements [My Copy] Bioinformatics (25 January 2009), btp043. by Leila Taher, Ivan Ovcharenko posted by 4 people caseybrown BergmanLab daveGerrard djkt
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000330. by Jaebum Kim, Xin He, Saurabh Sinha posted by 16 people daveGerrard kevinemamy RockmanLab dpollard caseybrown druvus WanderingAengus BergmanLab JustinCrocker cis-regulatory-evolution cisevol cajunsushi djkt emptyhb cabbagesofdoom Stew
	Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots [My Copy] Genetics, Vol. 180, No. 4. (1 December 2008), pp. 1909-1925. by Hyun M. Kang, Chun Ye, Eleazar Eskin posted by 4 people lp2 guhjy caseybrown djkt
	Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1845-1848. by Leighton J. Core, Joshua J. Waterfall, John T. Lis posted by 15 people hagechouchin443 gdb caseybrown sebastien_vigneau bpcusack inesdesantiago Koch_Lab skoch3 djkt strands Glires lp2 sandersl diaz0058 jbhiatt
	RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1851-1854. by Pascal Preker, Jesper Nielsen, Susanne Kammler, et al.Soren Lykke-Andersen, Marianne S. Christensen, Christophe K. Mapendano, Mikkel H. Schierup, Torben H. Jensen posted by 12 people inesdesantiago bartjacobse gdb bertelsen 4th_floor_JC caseybrown lflorez sebastien_vigneau djkt strands diaz0058 jbhiatt
	FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease. [My Copy] Genome biology, Vol. 9, No. 12. (2008) by R. Chen, A. A. Morgan, J. Dudley, et al.T. Deshpande, L. Li, K. Kodama, A. P. Chiang, A. J. Butte posted by 10 people daforerog jfr brdwilde djkt Zephyrus renatomilani druvus natstreet gjoslyn caseybrown
	Gene regulation in primates evolves under tissue-specific selection pressures. [My Copy] PLoS genetics, Vol. 4, No. 11. (21 November 2008), e1000271. by Ran Blekhman, Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad posted by 15 people gjuggler gderwin JustinCrocker R.E.A.D Zephyrus bpcusack bertrandservin cis-regulatory-evolution cisevol operon emptyhb shoshin djkt gdb caseybrown
	Sequencing the nuclear genome of the extinct woolly mammoth [My Copy] Nature, Vol. 456, No. 7220. (20 November 2008), pp. 387-390. by Webb Miller, Daniela I. Drautz, Aakrosh Ratan, et al.Barbara Pusey, Ji Qi, Arthur M. Lesk, Lynn P. Tomsho, Michael D. Packard, Fangqing Zhao, Andrei Sher, Alexei Tikhonov, Brian Raney, Nick Patterson, Kerstin Lindblad-Toh, Eric S. Lander, James R. Knight, Gerard P. Irzyk, Karin M. Fredrikson, Timothy T. Harkins, Sharon Sheridan, Tom Pringle, Stephan C. Schuster posted by 14 people aprasad kiekyon katanaT usagi-kirin operon reyez EsepBib treangen xianjun hpaces neils djkt jbhiatt caseybrown
	Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e277. by Vanessa Cheung, Gordon Chua, Nizar N. Batada, et al.Christian R. Landry, Stephen W. Michnick, Timothy R. Hughes, Fred Winston posted by 5 people xianjun inesdesantiago djkt bpcusack caseybrown
	Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000216. by Yair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, et al.Irene K. Moore, Eilon Sharon, Yaniv Lubling, Jonathan Widom, Eran Segal posted by 6 people gdb JLab cisevol cabbagesofdoom djkt caseybrown
	Silent but Not Static: Accelerated Base-Pair Substitution in Silenced Chromatin of Budding Yeasts [My Copy] PLoS Genet, Vol. 4, No. 11. (7 November 2008), e1000247. by Leonid Teytelman, Michael B. Eisen, Jasper Rine posted by 6 people benjaminsb gderwin operon bpcusack djkt caseybrown
	The impact of the nucleosome code on protein-coding sequence evolution in yeast. [My Copy] PLoS genetics, Vol. 4, No. 11. (7 November 2008), e1000250. by Tobias Warnecke, Nizar N. Batada, Laurence D. Hurst posted by 5 people druvus bpcusack cabbagesofdoom djkt caseybrown
	DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 66-72. by Timothy J. Ley, Elaine R. Mardis, Li Ding, et al.Bob Fulton, Michael D. McLellan, Ken Chen, David Dooling, Brian H. Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E. Larson, Dan C. Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, LaDeana W. Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R. Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson posted by 17 people n00c tommcdonagh jonilaserson jessopher frohike jfr vmsr yupu kentsis suteedee lewista reyez caseybrown pkonings rodney davfre djkt
	Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e263. by Justin Crocker, Yoichiro Tamori, Albert Erives posted by 5 people JustinCrocker xianjun emptyhb caseybrown djkt
	Reply to [ldquo]Rapidly evolving human promoter regions[rdquo] [My Copy] Nat Genet, Vol. 40, No. 11. (November 2008), pp. 1263-1264. by Ralph Haygood, Olivier Fedrigo, Gregory A. Wray posted by 4 people cis-regulatory-evolution cisevol caseybrown djkt
	Rapidly evolving human promoter regions. [My Copy] Nature genetics, Vol. 40, No. 11. (November 2008), pp. 1262-1263. by M. S. Taylor, T. Massingham, Y. Hayashizaki, P. Carninci, N. Goldman, C. A. Semple posted by 8 people daveGerrard galka8_diploma BergmanLab cisevol R.E.A.D Zephyrus caseybrown djkt
	Genome-wide distribution of ancestry in Mexican Americans [My Copy] Human Genetics, Vol. 124, No. 3. (1 October 2008), pp. 207-214. by Analabha Basu, Hua Tang, Xiaofeng Zhu, et al.C. Gu, Craig Hanis, Eric Boerwinkle, Neil Risch posted by 2 people caseybrown djkt
	Variations in Stress Sensitivity and Genomic Expression in Diverse S. cerevisiae Isolates [My Copy] PLoS Genet, Vol. 4, No. 10. (17 October 2008), e1000223. by Daniel J. Kvitek, Jessica L. Will, Audrey P. Gasch posted by 2 people caseybrown djkt
	Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238. by Joseph M. Gonzales, Jigar J. Patel, Napawan Ponmee, et al.Lei Jiang, Asako Tan, Steven P. Maher, Stefan Wuchty, Pradipsinh K. Rathod, Michael T. Ferdig posted by 4 people arider1 semrich caseybrown djkt
	Species-Specific Transcription in Mice Carrying Human Chromosome 21 [My Copy] Science (11 September 2008), 1160930. by Michael D. Wilson, Nuno L. Barbosa-Morais, Dominic Schmidt, et al.Caitlin M. Conboy, Lesley Vanes, Victor L. Tybulewicz, Elizabeth M. Fisher, Simon Tavare, Duncan T. Odom posted by 22 people ajaymalik cassj jbhiatt GustavoLacerda ptrobajo ivanek kaarsinogen jmjimenez jessopher isimpson dlobo GEB djkt strands caseybrown erel10 Roswell Cancer Crosstalk Zephyrus sebastien_vigneau Stew bpcusack emptyhb
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted by 22 people shikin vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Roswell Cancer Crosstalk Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy
	A robust statistical method for case-control association testing with copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1245-1252. by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, et al.Richard Redon, Jonathan Marchini, David Clayton, Matthew E. Hurles posted by 18 people biovils daed zufar daforerog pengchy ptrobajo vplagnol waszak caseybrown Roswell Cancer Crosstalk Zephyrus dakelley buyske misonneh djkt rdiaz Stew guhjy
	Shadow Enhancers as a Source of Evolutionary Novelty [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), 1314. by Joung-Woo Hong, David A. Hendrix, Michael S. Levine posted by 21 people mjoach daveGerrard BergmanLab cisevol TranscriptionalRegulationWithThermodynamicModels jfr rouault emptyhb GEB dlobo sebastien_vigneau Stew bpcusack Ema Roswell Cancer Crosstalk Zephyrus djkt natstreet isimpson maximilianh caseybrown
	Human-specific gain of function in a developmental enhancer. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350. by Shyam Prabhakar, Axel Visel, Jennifer A. Akiyama, et al.Malak Shoukry, Keith D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R. Fitzpatrick, Veena Afzal, Len A. Pennacchio, Edward M. Rubin, James P. Noonan posted by 16 people paulrigor Annab jfr Stew shoshin bpcusack emptyhb Roswell Cancer Crosstalk Zephyrus sebastien_vigneau djkt natstreet isimpson maximilianh caseybrown eskay
	A common sequence motif associated with recombination hot spots and genome instability in humans [My Copy] Nature Genetics, Vol. 40, No. 9. (24 August 2008), pp. 1124-1129. by Simon Myers, Colin Freeman, Adam Auton, Peter Donnelly, Gil Mcvean posted by 3 people daforerog djkt caseybrown
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted by 11 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb caseybrown
	Selective Constraints in Experimentally Defined Primate Regulatory Regions [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000157. by Daniel J. Gaffney, Ran Blekhman, Jacek Majewski posted by 13 people daveGerrard xianjun madreach alhufton djkt bpcusack aprasad pradiptaray caseybrown maximilianh BergmanLab cisevol cis-regulatory-evolution
	Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans [My Copy] Genome Biology, Vol. 9, No. 8. (2008) by Mara Lawniczak, Alisha Holloway, David Begun, Corbin Jones posted by 6 people emptyhb APRegier caseybrown cisevol cis-regulatory-evolution djkt
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted by 9 people darian mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt epigenetics
	Considering dependence among genes and markers for false discovery control in eQTL mapping. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 18. (15 September 2008), pp. 2015-2022. by L. Chen, T. Tong, H. Zhao posted by 4 people caseybrown djkt guhjy orzenil
	Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. [My Copy] Nature, Vol. 455, No. 7209. (4 September 2008), pp. 105-108. by D. Tian, Q. Wang, P. Zhang, et al.H. Araki, S. Yang, M. Kreitman, T. Nagylaki, R. Hudson, J. Bergelson, J. Q. Chen posted by 11 people biomcgary Annab aprasad dakelley parkinson's disease references zwang psique djkt caseybrown bpcusack gjuggler
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