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	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 51 people trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted by 16 people dfdong jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin structural_bioinformatics McCammon Bioinformatics barry semin renatomilani svozil
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted by 21 people dfdong martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [My Copy] Nucleic acids research. , Vol. 33, No. Database issue. (1 January 2005) by Frances Pearl, Annabel Todd, Ian Sillitoe, et al.Mark Dibley, Oliver Redfern, Tony Lewis, Christopher Bennett, Russell Marsden, Alistair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew Harrison, Timothy Dallman, Gabrielle Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline Johnston, Antonio Sillero, Janet Thornton, Christine Orengo posted by 9 people dfdong Orengo Group Journal Picks sillitoe barry tjimenez chrn alexg structural_bioinformatics Bioinformatics
	A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (3 June 2005), pp. 285-289. by John Moult posted by 16 people krapnik timhubbard flbarroso mcbla ujh nigham thaliana warlock6x3 marcius ffranca j3xucite dgront granujilla BioinfoCIPF SGU-CIPF mingzhi
	Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction. [My Copy] Proteins, Vol. Suppl 3 (1999), pp. 149-170. by C. A. Orengo, J. E. Bray, T. Hubbard, L. LoConte, I. Sillitoe posted by 3 people Orengo Group Journal Picks sillitoe timhubbard
	Ensembl 2008. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (13 January 2008) by P. Flicek, B. L. Aken, K. Beal, et al.B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S. C. Dyer, T. Eyre, S. Fitzgerald, J. Fernandez-Banet, S. Gräf, S. Haider, M. Hammond, R. Holland, K. L. Howe, K. Howe, N. Johnson, A. Jenkinson, A. Kähäri, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, K. Megy, P. Meidl, B. Overduin, A. Parker, B. Pritchard, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. J. Vilella, J. Vogel, S. White, M. Wood, E. Birney, T. Cox, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, J. Herrero, T. J. Hubbard, A. Kasprzyk, G. Proctor, J. Smith, A. Ureta-Vidal, S. Searle posted by 16 people timhubbard thegoose2 ilyashl semin brdwilde nlapalu raistrick guhjy hpiwowar jandot flexer daed dullhunk skumagai tharris janasont
	Effect of cavity-creating mutations in the hydrophobic core of chymotrypsin inhibitor 2. [My Copy] Biochemistry, Vol. 32, No. 42. (26 October 1993), pp. 11259-11269. by S. E. Jackson, M. Moracci, N. elMasry, C. M. Johnson, A. R. Fersht posted by 1 person nigham
	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops [My Copy] Algorithms in Bioinformatics (2007), pp. 265-276. by Ankur Dhanik, Peggy Yao, Nathan Marz, et al.Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe posted by 1 person nigham
	Structural details, pathways, and energetics of unfolding apomyoglobin. [My Copy] Journal of molecular biology, Vol. 325, No. 3. (17 January 2003), pp. 555-567. by A. Onufriev, D. A. Case, D. Bashford posted by 1 person nigham
	The conserved residues of the ligand-binding domains of steroid receptors are located in the core of the molecules. [My Copy] Journal of molecular graphics & modelling, Vol. 19, No. 6. (2001) by M. Maeda posted by 1 person nigham
	Crystal structure of a gamma-herpesvirus cyclin-cdk complex. [My Copy] The EMBO journal, Vol. 19, No. 12. (15 June 2000), pp. 2877-2888. by G. L. Card, P. Knowles, H. Laman, N. Jones, N. Q. McDonald posted by 1 person nigham
	Crystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-A resolution: a large conformational change in ADP-dependent glucokinase. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 10. (October 2002), pp. 2456-2463. by H. Tsuge, H. Sakuraba, T. Kobe, A. Kujime, N. Katunuma, T. Ohshima posted by 1 person nigham
	pFlexAna: detecting conformational changes in remotely related proteins [My Copy] Nucl. Acids Res. (13 May 2008), gkn259. by Anshul Nigham, Lisa Tucker-Kellogg, Ivana Mihalek, Chandra Verma, David Hsu posted by 1 person nigham
	Crystal structure of thiaminase-I from Bacillus thiaminolyticus at 2.0 A resolution. [My Copy] Biochemistry, Vol. 37, No. 45. (10 November 1998), pp. 15981-15989. by N. Campobasso, C. A. Costello, C. Kinsland, T. P. Begley, S. E. Ealick posted by 1 person nigham
	Protein intermediate trapped by the simultaneous crystallization process. Crystal structure of an iron-saturated intermediate in the Fe3+ binding pathway of camel lactoferrin at 2.7 a resolution. [My Copy] The Journal of biological chemistry, Vol. 276, No. 39. (28 September 2001), pp. 36817-36823. by J. A. Khan, P. Kumar, A. Srinivasan, T. P. Singh posted by 1 person nigham
	Structure of human apolactoferrin at 2.0 A resolution. Refinement and analysis of ligand-induced conformational change. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 54, No. Pt 6 Pt 2. (1 November 1998), pp. 1319-1335. by G. B. Jameson, B. F. Anderson, G. E. Norris, D. H. Thomas, E. N. Baker posted by 1 person nigham
	Molecular replacement solution of the structure of apolactoferrin, a protein displaying large-scale conformational change. [My Copy] Acta crystallographica. Section B, Structural science, Vol. 47 ( Pt 6) (1 December 1991), pp. 998-1004. by G. E. Norris, B. F. Anderson, E. N. Baker posted by 2 people jrperillaj nigham
	The atomic resolution crystal structure of atratoxin determined by single wavelength anomalous diffraction phasing. [My Copy] The Journal of biological chemistry, Vol. 279, No. 37. (10 September 2004), pp. 39094-39104. by X. Lou, Q. Liu, X. Tu, et al.J. Wang, M. Teng, L. Niu, D. J. Schuller, Q. Huang, Q. Hao posted by 1 person nigham
	Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae. [My Copy] Science (New York, N.Y.), Vol. 272, No. 5269. (21 June 1996), pp. 1788-1791. by E. Hofmann, P. M. Wrench, F. P. Sharples, R. G. Hiller, W. Welte, K. Diederichs posted by 1 person nigham
	Optimization of P1-P3 groups in symmetric and asymmetric HIV-1 protease inhibitors. [My Copy] European journal of biochemistry / FEBS, Vol. 270, No. 8. (April 2003), pp. 1746-1758. by H. O. Andersson, K. Fridborg, S. Löwgren, et al.M. Alterman, A. Mühlman, M. Björsne, N. Garg, I. Kvarnström, W. Schaal, B. Classon, A. Karlén, U. H. Danielsson, G. Ahlsén, U. Nillroth, L. Vrang, B. Oberg, B. Samuelsson, A. Hallberg, T. Unge posted by 1 person nigham
	Conformational coupling in DNA polymerase fidelity. [My Copy] Annual review of biochemistry, Vol. 62 (1993), pp. 685-713. by K. A. Johnson posted by 1 person nigham
	Molecular recognition in antibody-antigen complexes. [My Copy] Advances in protein chemistry, Vol. 61 (2002), pp. 119-160. by E. J. Sundberg, R. A. Mariuzza posted by 1 person nigham
	Equation of State Calculations by Fast Computing Machines [My Copy] J. Chem. Phys., Vol. 21 (June 1953), pp. 1087-1092. by N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, E. Teller posted by 2 people carmenrg nigham
	Einfluss der Configuration auf die Wirkung der Enzyme [My Copy] Berichte der deutschen chemischen Gesellschaft, Vol. 27, No. 3. (1894), pp. 2985-2993. by Emil Fischer posted by 2 people aqeel nigham
	A millennial myosin census. [My Copy] Molecular biology of the cell, Vol. 12, No. 4. (April 2001), pp. 780-794. by J. S. Berg, B. C. Powell, R. E. Cheney posted by 1 person nigham
	Crystal structure of firefly luciferase throws light on a superfamily of adenylate-forming enzymes. [My Copy] Structure (London, England : 1993), Vol. 4, No. 3. (15 March 1996), pp. 287-298. by E. Conti, N. P. Franks, P. Brick posted by 1 person nigham
	100,000 protein structures for the biologist. [My Copy] Nature structural biology, Vol. 5, No. 12. (December 1998), pp. 1029-1032. by A. Sali posted by 1 person nigham
	The ups and downs of protein topology; rapid comparison of protein structure. [My Copy] Protein engineering, Vol. 13, No. 12. (December 2000), pp. 829-837. by A. C. Martin posted by 1 person nigham
	Conformational proofreading: the impact of conformational changes on the specificity of molecular recognition. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by Y. Savir, T. Tlusty posted by 4 people dkoveal jjray Ema nigham
	Induced fit in RNA-protein recognition [My Copy] Nat Struct Mol Biol, Vol. 7, No. 10. (October 2000), pp. 834-837. by James R. Williamson posted by 2 people marck nigham
	Active human immunodeficiency virus protease is required for viral infectivity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 13. (July 1988), pp. 4686-4690. by N. E. Kohl, E. A. Emini, W. A. Schleif, et al.L. J. Davis, J. C. Heimbach, R. A. Dixon, E. M. Scolnick, I. S. Sigal posted by 1 person nigham
	Macromolecular electrostatics: continuum models and their growing pains. [My Copy] Current opinion in structural biology, Vol. 11, No. 2. (April 2001), pp. 243-252. by T. Simonson posted by 2 people flbarroso nigham
	Structural patterns in globular proteins [My Copy] Nature, Vol. 261, No. 5561. (17 June 1976), pp. 552-558. by Michael Levitt, Cyrus Chothia posted by 1 person nigham
	The effects of solvent on the conformation and the collective motions of protein: Normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum [My Copy] Chemical Physics, Vol. 158, No. 2-3. (15 December 1991), pp. 447-472. by Akio Kitao, Fumio Hirata, Nobuhiro Go posted by 2 people saravan nigham
	Accurate structural correlations from maximum likelihood superpositions [My Copy] PLoS Computational Biology, Vol. preprint, No. 2008. (1 January 2008), e43.eor. by Douglas L. Theobald, Deborah S. Wuttke posted by 1 person nigham
	Solution structure of the PX domain, a target of the SH3 domain. [My Copy] Nat Struct Biol, Vol. 8, No. 6. (June 2001), pp. 526-530. by H. Hiroaki, T. Ago, T. Ito, H. Sumimoto, D. Kohda posted by 2 people nigham kallberg
	Solution structure of the Vam7p PX domain. [My Copy] Biochemistry, Vol. 41, No. 19. (14 May 2002), pp. 5956-5962. by J. Lu, J. Garcia, I. Dulubova, T. C. Südhof, J. Rizo posted by 1 person nigham
	Detection and characterization of xenon-binding sites in proteins by 129Xe NMR spectroscopy. [My Copy] J Mol Biol, Vol. 322, No. 2. (13 September 2002), pp. 425-440. by S. M. Rubin, S. Y. Lee, E. J. Ruiz, A. Pines, D. E. Wemmer posted by 1 person nigham
	Involvement of the C terminus in intramolecular nitrogen channeling in glucosamine 6-phosphate synthase: evidence from a 1.6 A crystal structure of the isomerase domain. [My Copy] Structure, Vol. 6, No. 8. (15 August 1998), pp. 1047-1055. by A. Teplyakov, G. Obmolova, M. A. Badet-Denisot, B. Badet, I. Polikarpov posted by 1 person nigham
	Structure of an E6AP-UbcH7 Complex: Insights into Ubiquitination by the E2-E3 Enzyme Cascade [My Copy] Science, Vol. 286, No. 5443. (12 November 1999), pp. 1321-1326. by Lan Huang, Elspeth Kinnucan, Guangli Wang, et al.Sylvie Beaudenon, Peter M. Howley, Jon M. Huibregtse, Nikola P. Pavletich posted by 1 person nigham
	Conformational Flexibility Underlies Ubiquitin Ligation Mediated by the WWP1 HECT Domain E3 Ligase [My Copy] Molecular Cell, Vol. 11, No. 1. (January 2003), pp. 249-259. by Mark A. Verdecia, Claudio A. Joazeiro, Nicholas J. Wells, et al.Jean-Luc Ferrer, Marianne E. Bowman, Tony Hunter, Joseph P. Noel posted by 1 person nigham
	Protein Conformational Flexibility Analysis with Noisy Data [My Copy] Research in Computational Molecular Biology (2007), pp. 396-411. by Anshul Nigham, David Hsu posted by 1 person nigham
	Structural biology: The dance of domains [My Copy] Nature, Vol. 450, No. 7173. (19 December 2007), pp. 1171-1172. by Joseph D. Puglisi posted by 2 people mingzhi nigham
	Visualizing spatially correlated dynamics that directs RNA conformational transitions [My Copy] Nature, Vol. 450, No. 7173., pp. 1263-1267. by Qi Zhang, Andrew C. Stelzer, Charles K. Fisher, Hashim M. Al-Hashimi posted by 11 people cactus sobolevnrm niallhaslam joseph_x_zhou baker-group kintoki kluck HIV_DR Soft Matter nigham simone
	Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation. [My Copy] J Mol Biol, Vol. 310, No. 5. (27 July 2001), pp. 1039-1053. by D. Roccatano, A. E. Mark, S. Hayward posted by 1 person nigham
	Unit-vector RMS (URMS) as a tool to analyze molecular dynamics trajectories. [My Copy] Proteins, Vol. 37, No. 4. (1 December 1999), pp. 554-564. by K. Kedem, L. P. Chew, R. Elber posted by 3 people Lombardo_7 sebk nigham
	Protein structural similarity search by Ramachandran codes [My Copy] BMC Bioinformatics, Vol. 8 (23 August 2007), 307. by Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping-Chiang Lyu posted by 2 people reyez nigham
	Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution [My Copy] Science, Vol. 246, No. 4934. (1 December 1989), pp. 1149-1152. by M. Miller, J. Schneider, Bk Sathyanarayana, et al.Mv Toth, Gr Marshall, L. Clawson, L. Selk, Sb Kent, A. Wlodawer posted by 2 people zambujo nigham
	Protein structure similarities. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 348-353. by P. Koehl posted by 2 people bicko nigham
	Convergence of molecular dynamics simulations of membrane proteins. [My Copy] Proteins (22 January 2007) by Alan Grossfield, Scott E E. Feller, Michael C C. Pitman posted by 3 people sunnytov dimka nigham
	Simulation of conformational transitions by the restricted perturbation-targeted molecular dynamics method. [My Copy] J Chem Phys, Vol. 122, No. 11. (15 March 2005) by A. van der Vaart, M. Karplus posted by 2 people nigham ruvido
	Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures [My Copy] Lecture Notes in Computer Science : Combinatorial Pattern Matching (2006), pp. 84-93. by Tetsuo Shibuya posted by 1 person nigham
	Databases in protein crystallography. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 54, No. Pt 6 Pt 1. (1 November 1998), pp. 1119-1131. by G. J. Kleywegt, T. A. Jones posted by 3 people aisyahrehan nigham wilbur
	New Monte Carlo algorithms for protein folding. [My Copy] Current opinion in structural biology, Vol. 9, No. 2. (April 1999), pp. 177-183. by U. H. Hansmann, Y. Okamoto posted by 7 people apaydin flbarroso dgront rabio insectopalo iantunbridge nigham
	SPICKER: a clustering approach to identify near-native protein folds. [My Copy] J Comput Chem, Vol. 25, No. 6. (30 April 2004), pp. 865-871. by Y. Zhang, J. Skolnick posted by 6 people klexa Structural Biology Group TorVergata oteri j3xucite iakes nigham
	Global fold determination from a small number of distance restraints. [My Copy] J Mol Biol, Vol. 251, No. 2. (11 August 1995), pp. 308-326. by A. Aszódi, M. J. Gradwell, W. R. Taylor posted by 2 people gbart nigham
	Sugar-binding and crystallographic studies of an arabinose-binding protein mutant (Met108Leu) that exhibits enhanced affinity and altered specificity. [My Copy] Biochemistry, Vol. 30, No. 28. (16 July 1991), pp. 6861-6866. by P. S. Vermersch, D. D. Lemon, J. J. Tesmer, F. A. Quiocho posted by 2 people nigham papatonyhill
	Extensive features of tight oligosaccharide binding revealed in high-resolution structures of the maltodextrin transport/chemosensory receptor. [My Copy] Structure, Vol. 5, No. 8. (15 August 1997), pp. 997-1015. by F. A. Quiocho, J. C. Spurlino, L. E. Rodseth posted by 3 people jrperillaj nigham papatonyhill
	On the origin and highly likely completeness of single-domain protein structures. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 8. (21 February 2006), pp. 2605-2610. by Y. Zhang, I. A. Hubner, A. K. Arakaki, E. Shakhnovich, J. Skolnick posted by 3 people akraemer nigham dgront
	Application of a Theory of Enzyme Specificity to Protein Synthesis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 44, No. 2. (February 1958), pp. 98-104. by D. E. Koshland posted by 8 people aqeel cen4ik apostola robert kazemi nigham sim82 boris_aguilar
	Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin. [My Copy] J Chem Phys, Vol. 121, No. 1. (1 July 2004), pp. 415-425. by N. Singhal, C. D. Snow, V. S. Pande posted by 1 person nigham
	Gaussian Sampling for Probabilistic Roadmap Planners [My Copy] by Valérie Boor, Mark H. Overmars, Frank A. van der Stappen posted by 2 people sgroenewegen nigham
	OBBTree: a hierarchical structure for rapid interference detection [My Copy] In SIGGRAPH '96: Proceedings of the 23rd annual conference on Computer graphics and interactive techniques (1996), pp. 171-180. by S. Gottschalk, M. C. Lin, D. Manocha posted by 3 people maburkitt nigham ima
	$My PDF lozano-p&\#233;rez_90_spatial.pdf$ Spatial planning: a configuration space approach [My Copy] (1990), pp. 259-271. by T. Lozano-P&\#233;rez posted by 1 person nigham
	Probabilistic roadmaps for path planning in high-dimensional configuration spaces [My Copy] Robotics and Automation, IEEE Transactions on, Vol. 12, No. 4. (1996), pp. 566-580. by L. E. Kavraki, P. Svestka, J. C. Latombe, M. H. Overmars posted by 6 people sgroenewegen varung WhiteMagic ima nigham aqeel
	Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 164-179. by Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki posted by 9 people apaydin nigham aqeel yongzhao elham hmk sobolevnrm TSRI_MGL baker-group
	A path planning approach for computing large-amplitude motions of flexible molecules. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (June 2005) by J. Cortés, T. Siméon, V. Ruiz de Angulo, D. Guieysse, M. Remaud-Siméon, V. Tran posted by 2 people nigham aqeel
	The changing landscape of protein allostery. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 1. (February 2006), pp. 102-108. by J. F. Swain, L. M. Gierasch posted by 5 people nigham lna choonpeng ruvido mottonen
	Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme [My Copy] Proteins: Structure, Function, and Genetics, Vol. 30, No. 2. (1998), pp. 144-154. by Steven Hayward, Herman J. C. Berendsen posted by 4 people barry nigham structural_bioinformatics Bioinformatics
	Knowledge-based potentials in protein design [My Copy] Current Opinion in Structural Biology In Membranes / Engineering and design, Vol. 16, No. 4. (August 2006), pp. 508-513. by Alan M. Poole, Rama Ranganathan posted by 8 people flbarroso mcbla nigham marcius rabio BioinfoCIPF SGU-CIPF bethbromley
	Designing potential energy functions for protein folding. [My Copy] Curr Opin Struct Biol, Vol. 9, No. 2. (April 1999), pp. 184-188. by M. H. Hao, H. A. Scheraga posted by 1 person nigham
	Multiple conformational changes in enzyme catalysis. [My Copy] Biochemistry, Vol. 41, No. 26. (2 July 2002), pp. 8221-8228. by G. G. Hammes posted by 3 people lna siebertm nigham
	Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. [My Copy] J Comput Biol, Vol. 10, No. 3-4. (2003), pp. 239-255. by N. M. Amato, K. A. Dill, G. Song posted by 2 people nigham aqeel
	Automated structure prediction of weakly homologous proteins on a genomic scale [My Copy] PNAS, Vol. 101, No. 20. (18 May 2004), pp. 7594-7599. by Yang Zhang, Jeffrey Skolnick posted by 6 people newton1234 babakap nigham wouterboomsma j3xucite mirzazadeh
	Threading a database of protein cores. [My Copy] Proteins, Vol. 23, No. 3. (November 1995), pp. 356-369. by T. Madej, J. F. Gibrat, S. H. Bryant posted by 3 people DickSilver nigham dgront
	Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 410-417. by K. Ginalski, L. Rychlewski posted by 2 people dgront nigham
	Comparative modeling in CASP6 using consensus approach to template selection, sequence-structure alignment, and structure assessment. [My Copy] Proteins, Vol. 61 Suppl 7 (2005), pp. 99-105. by C. Venclovas, M. Margelevicius posted by 2 people nigham schuylrp
	In quest of an empirical potential for protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 16, No. 2. (6 April 2006), pp. 166-171. by J. Skolnick posted by 5 people flbarroso krapnik BragilMassoud nigham bilab
	Operational space dynamics: efficient algorithms for modeling and control of branching mechanisms [My Copy] Robotics and Automation, 2000. Proceedings. ICRA '00. IEEE International Conference on, Vol. 1 (2000), pp. 850-856 vol.1. by Kyong-Sok Chang, O. Khatib posted by 1 person nigham
	A new method for fast and accurate derivation of molecular conformations. [My Copy] J Chem Inf Comput Sci, Vol. 42, No. 1. (b 2002), pp. 64-70. by M. Zhang, L. E. Kavraki posted by 2 people nigham megs
	A kinematic view of loop closure. [My Copy] J Comput Chem, Vol. 25, No. 4. (March 2004), pp. 510-528. by E. A. Coutsias, C. Seok, M. P. Jacobson, K. A. Dill posted by 4 people newton1234 nigham yongzhao TSRI_MGL
	The backrub motion: how protein backbone shrugs when a sidechain dances. [My Copy] Structure, Vol. 14, No. 2. (February 2006), pp. 265-274. by I. W. Davis, W. B. Arendall, D. C. Richardson, J. S. Richardson posted by 5 people ana nigham jwm structural_bioinformatics Bioinformatics
	Automatic atom type and bond type perception in molecular mechanical calculations. [My Copy] J Mol Graph Model (1 February 2006) by Junmei Wang, Wei Wang, Peter A A. Kollman, David A A. Case posted by 7 people A_Coletta_Thesis dgruiz nigham xdeupi LabCompMed marcvanhouteghem AndreaColetta
	Three-dimensional structure of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase from Salmonella typhimurium determined to 2.3 A resolution,. [My Copy] Biochemistry, Vol. 37, No. 21. (26 May 1998), pp. 7686-7695. by T. B. Thompson, M. G. Thomas, J. C. Escalante-Semerena, I. Rayment posted by 1 person nigham
	Accuracy of protein flexibility predictions. [My Copy] Proteins, Vol. 19, No. 2. (June 1994), pp. 141-149. by M. Vihinen, E. Torkkila, P. Riikonen posted by 1 person nigham
	Principles that Determine the Structure of Proteins [My Copy] Annual Review of Biochemistry, Vol. 53, No. 1. (1984), pp. 537-572. by C. Chothia posted by 6 people carlosjavierna ana barry nigham structural_bioinformatics Bioinformatics
	Exploring conformational space with a simple lattice model for protein structure. [My Copy] J Mol Biol, Vol. 243, No. 4. (4 November 1994), pp. 668-682. by D. A. Hinds, M. Levitt posted by 2 people nigham baaden
	A simplified representation of protein conformations for rapid simulation of protein folding. [My Copy] J Mol Biol, Vol. 104, No. 1. (14 June 1976), pp. 59-107. by M. Levitt posted by 4 people stefanorb baaden dgront nigham
	Computer simulation of protein folding. [My Copy] Nature, Vol. 253, No. 5494. (27 February 1975), pp. 694-698. by M. Levitt, A. Warshel posted by 4 people flbarroso nigham baaden dgront
	Improved amino acid flexibility parameters [My Copy] Protein Sci, Vol. 12, No. 5. (1 May 2003), pp. 1060-1072. by David K. Smith, Predrag Radivojac, Zoran Obradovic, Keith A. Dunker, Guang Zhu posted by 1 person nigham
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted by 8 people mijam granujilla bullli502 nigham thaliana dgront JimmyMac saunders
	Conformational change of proteins arising from normal mode calculations [My Copy] Protein Eng., Vol. 14, No. 1. (1 January 2001), pp. 1-6. by F. Tama, Y. H. Sanejouand posted by 9 people sanejouand baker-group sobolevnrm baaden aqeel ruvido martainn saravan nigham
	Effective energy functions for protein structure prediction. [My Copy] Curr Opin Struct Biol, Vol. 10, No. 2. (April 2000), pp. 139-145. by T. Lazaridis, M. Karplus posted by 5 people karbak nigham marcius BioinfoCIPF SGU-CIPF
	A graph-theory algorithm for rapid protein side-chain prediction. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014. by A. A. Canutescu, A. A. Shelenkov, R. L. Dunbrack posted by 12 people oceanwind mcbla karbak nigham bicko blackbart bluvsh1 rsantana mijam jwm carlk newton1234
	Regressions by leaps and bounds [My Copy] Technometrics, Vol. 42, No. 1. (February 2000), pp. 69-79. by George M. Furnival, Robert W. Wilson posted by 1 person nigham
	Protein structure comparison using the markov transition model of evolution. [My Copy] Proteins, Vol. 41, No. 1. (1 October 2000), pp. 108-122. by T. Kawabata, K. Nishikawa posted by 2 people nigham analogAI
	The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics [My Copy] The Journal of Chemical Physics, Vol. 106, No. 4. (1997), pp. 1495-1517. by Oren M. Becker, Martin Karplus posted by 3 people chiufanlee nigham Diego_Prada
	An All-Atom Force Field for Tertiary Structure Prediction of Helical Proteins [My Copy] Biophys. J., Vol. 87, No. 5. (1 November 2004), pp. 3100-3109. by T. Herges, W. Wenzel posted by 1 person nigham
	The early stage of folding of villin headpiece subdomain observed in a 200-nanosecond fully solvated molecular dynamics simulation [My Copy] PNAS, Vol. 95, No. 17. (18 August 1998), pp. 9897-9902. by Yong Duan, Lu Wang, Peter A. Kollman posted by 1 person nigham