CiteULike: Author Baumberger

Magic Angles and Cross-Hatching Instability in Hydrogel Fracture

T Baumberger — 2008-05-05T20:13:26-00:00

Physical Review Letters, Vol. 100, No. 17. (2008)

The full 2D analysis of roughness profiles of fracture surfaces resulting from quasistatic crack propagation in gelatin gels reveals an original behavior characterized by (i) strong anisotropy with maximum roughness at V-independent symmetry-preserving angles and (ii) a subcritical instability leading, below a critical velocity, to a cross-hatched regime due to straight macrosteps drifting at the same magic angles and nucleated on crack-pinning network inhomogeneities. Step height values are determined by the width of the strain-hardened zone, governed by the elastic crack blunting characteristic of soft solids with breaking stresses much larger than low strain moduli.

Nodal Quasiparticles and Antinodal Charge Ordering in Ca2-xNaxCuO2Cl2

Kyle Shen — 2008-04-22T11:11:12-00:00

Science, Vol. 307, No. 5711. (11 February 2005), pp. 901-904.

Understanding the role of competing states in the cuprates is essential for developing a theory for high-temperature superconductivity. We report angle-resolved photoemission spectroscopy experiments which probe the 4a0 x 4a0 charge-ordered state discovered by scanning tunneling microscopy in the lightly doped cuprate superconductor Ca2-xNaxCuO2Cl2. Our measurements reveal a marked dichotomy between the real- and momentum-space probes, for which charge ordering is emphasized in the tunneling measurements and photoemission is most sensitive to excitations near the node of the d-wave superconducting gap. These results emphasize the importance of momentum anisotropy in determining the complex electronic properties of the cuprates and places strong constraints on theoretical models of the charge-ordered state. 10.1126/science.1103627

Creep, stick-slip, and dry-friction dynamics: Experiments and a heuristic model

F Heslot — 2008-04-14T02:32:45-00:00

Physical Review E, Vol. 49, No. 6. (1 June 1994), 4973.

Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.

N Baumberger — 2005-11-17T16:36:49-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 33. (16 August 2005), pp. 11928-11933.

ARGONAUTE (AGO) RNA-binding proteins are involved in RNA silencing. They bind to short interfering RNAs (siRNAs) and microRNAs (miRNAs) through a conserved PAZ domain, and, in animals, they assemble into a multisubunit RNA-induced silencing complex (RISC). The mammalian AGO2, termed Slicer, directs siRNA- and miRNA-mediated cleavage of a target RNA. In Arabidopsis, there are 10 members of the AGO family, and the AGO1 protein is potentially the Slicer component in different RNA-silencing pathways. Here, we show that AGO1 selectively recruits certain classes of short silencing-related RNA. AGO1 is physically associated with miRNAs, transacting siRNAs, and transgene-derived siRNAs but excludes virus-derived siRNAs and 24-nt siRNAs involved in chromatin silencing. We also show that AGO1 has Slicer activity. It mediates the in vitro cleavage of a mir165 target RNA in a manner that depends on the sequence identity of amino acid residues in the PIWI domain that are predicted by homology with animal Slicer-competent AGO proteins to constitute the RNase catalytic center. However, unlike animals, we find no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex. The Slicer activity fractionates as a complex of approximately 150 kDa that likely constitutes the AGO1 protein and associated RNA without any other proteins. Based on sequence similarity, we predict that other Arabidopsis AGOs might have a similar catalytic activity but recruit different subsets of siRNAs or miRNAs.

The visual control of stability in children and adults: postural readjustments in a ground optical flow

Bernard Baumberger — 2007-07-10T14:11:14-00:00

Experimental Brain Research, Vol. 159, No. 1. (1 November 2004), pp. 33-46.

The aim of this research was to analyse the development of postural reactions to approaching (AOF) and receding (ROF) ground rectilinear optical flows. Optical flows were shaped by a pattern of circular spots of light projected on the ground surface by a texture flow generator. The geometrical structure of the projected scenes corresponded to the spatial organisation of visual flows encountered in open outdoor settings. Postural readjustments of 56 children, ranging from 7 to 11 years old, and 12 adults were recorded by the changes of the centre of foot pressure (CoP) on a force platform during 44-s exposures to the moving texture. Before and after the optical flows exposure, a 24-s motionless texture served as a reference condition. Effect of ground rectilinear optical flows on postural control development was assessed by analysing sway latencies (SL), stability performances and postural orientation. The main results that emerge from this experiment show that postural responses are directionally specific to optical flow pattern and that they vary as a function of the motion onset and offset. Results showed that greater developmental changes in postural control occurred in an AOF (both at the onset and offset of the optical flow) than in an ROF. Onset of an approaching flow induced postural instability, canonical shifts in postural orientation and long latencies in children which were stronger than in the receding flow. This pattern of responses evolved with age towards an improvement in stability performances and shorter SL. The backward decreasing shift of the CoP in children evolved in adults towards forward postural tilt, i.e. in the opposite direction of the texture’s motion. Offset of an AOF motion induced very short SL in children (which became longer in adult subjects), strong postural instability, but weaker shift of orientation compared to the receding one. Postural stability improved and orientation shift evolved to forward inclinations with age. SL remained almost constant across age at both onset and offset of the receding flow. Critical developmental periods seem to occur by the age of 8 and 10 years, as suggested by the transient ‘neglect’ of the children to optical flows. Linear vection was felt by 90% of the 7 year olds and decreased with age to reach 55% in adult subjects. The mature sensorimotor coordination subserving the postural organisation shown in adult subjects is an example aiming at reducing the postural effects induced by optical flows. The data are discussed in relation to the perceptual importance of mobile visual references on a ground support.

Shifting the optimal pH of activity for a laccase from the fungus Trametes versicolor by structure-based mutagenesis.

C Madzak — 2007-04-11T13:34:25-00:00

Protein Eng Des Sel, Vol. 19, No. 2. (February 2006), pp. 77-84.

Laccases are oxidizing enzymes of interest because of their potential environmental and industrial applications. We performed site-directed mutagenesis of a laccase produced by Trametes versicolor in order to improve its catalytic properties. Considering a strong interaction of the Asp residue in position 206 with the substrate xylidine, we replaced it with Glu, Ala or Asn, expressed the mutant enzymes in the yeast Yarrowia lipolytica and assayed the transformation of phenolic and non-phenolic substrates. The transformation rates remain within the same range whatever the mutation of the laccase and the type of substrate: at most a 3-fold factor increase was obtained for k(cat) between the wild-type and the most efficient mutant Asp206Ala with 2,2'-azinobis(3-ethylbenzthiazoline-6-sulfonic) acid as a substrate. Nevertheless, the Asn mutation led to a significant shift of the pH (DeltapH = 1.4) for optimal activity against 2,6-dimethoxyphenol. This study also provides a new insight into the binding of the reducing substrate into the active T1 site and induced modifications in catalytic properties of the enzyme.

The importance of posture on the isokinetic assessment of spasticity.

TH Kakebeeke — 2005-12-06T15:13:30-00:00

Spinal Cord, Vol. 40, No. 5. (May 2002), pp. 236-243.

OBJECTIVE: To measure spasticity of the knee flexors and extensor muscles in two different hip positions. SETTING: Swiss Paraplegic Center Nottwil, Switzerland. METHODS: Twenty spinal cord injured (SCI) patients with complete lesions were tested with a torque-velocity dynamometer in the following positions: (1) supine with a hip angle of 0 degrees; (2) sitting with a hip angle of 90 degrees. The excursion of the knee was measured for both positions using a goniometer. Two flexion/extension movements of the knee were performed at a speed of 10 degrees per sec. A further four flexion/extension movements over the same trajectory were made at a speed of 120 degrees per sec. Eccentric peak torques were measured continuously during movement of both legs for both speeds. RESULTS: At a speed of 120 degrees per second, there was a significant difference in stretch reflex of the hamstrings and quadriceps femoris muscles for the two positions (Wilcoxon's paired t-test, P<0.05). Excitability was higher for the quadriceps femoris muscles in supine than in sitting position. For the hamstrings, the effect was reversed. Significant differences between sitting and supine position were not found for the speed of 10 degrees per sec. Test-retest reliability was high for the movements of 120 degrees per sec but low for 10 degrees per sec. CONCLUSIONS: Our findings indicate that for a reliable and comparable measurement of spasticity, an exact description of test position and procedure is essential.