CiteULike: Tag pnas

A korarchaeal genome reveals insights into the evolution of the Archaea.

James G Elkins — 2008-06-08T07:53:47-00:00

Proceedings of the National Academy of Sciences of the United States of America (5 June 2008)

The candidate division Korarchaeota comprises a group of uncultivated microorganisms that, by their small subunit rRNA phylogeny, may have diverged early from the major archaeal phyla Crenarchaeota and Euryarchaeota. Here, we report the initial characterization of a member of the Korarchaeota with the proposed name, "Candidatus Korarchaeum cryptofilum," which exhibits an ultrathin filamentous morphology. To investigate possible ancestral relationships between deep-branching Korarchaeota and other phyla, we used whole-genome shotgun sequencing to construct a complete composite korarchaeal genome from enriched cells. The genome was assembled into a single contig 1.59 Mb in length with a G + C content of 49%. Of the 1,617 predicted protein-coding genes, 1,382 (85%) could be assigned to a revised set of archaeal Clusters of Orthologous Groups (COGs). The predicted gene functions suggest that the organism relies on a simple mode of peptide fermentation for carbon and energy and lacks the ability to synthesize de novo purines, CoA, and several other cofactors. Phylogenetic analyses based on conserved single genes and concatenated protein sequences positioned the korarchaeote as a deep archaeal lineage with an apparent affinity to the Crenarchaeota. However, the predicted gene content revealed that several conserved cellular systems, such as cell division, DNA replication, and tRNA maturation, resemble the counterparts in the Euryarchaeota. In light of the known composition of archaeal genomes, the Korarchaeota might have retained a set of cellular features that represents the ancestral archaeal form.

Spatial scaling of functional gene diversity across various microbial taxa

Jizhong Zhou — 2008-06-04T10:25:35-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7768-7773.

Understanding the spatial patterns of organisms and the underlying mechanisms shaping biotic communities is a central goal in community ecology. One of the most well documented spatial patterns in plant and animal communities is the positive-power law relationship between species (or taxa) richness and area. Such taxa-area relationships (TARs) are one of the principal generalizations in ecology, and are fundamental to our understanding of the distribution of global biodiversity. However, TARs remain elusive in microbial communities, especially in soil habitats, because of inadequate sampling methodologies. Here, we describe TARs as gene-area relationships (GARs), at a whole-community level, across various microbial functional and phylogenetic groups in a forest soil, using a comprehensive functional gene array with >24,000 probes. Our analysis indicated that the forest soil microbial community exhibited a relatively flat gene-area relationship (slope z = 0.0624), but the z values varied considerably across different functional and phylogenetic groups (z = 0.0475-0.0959). However, the z values are several times lower than those commonly observed in plants and animals. These results suggest that the turnover in space of microorganisms may be, in general, lower than that of plants and animals. 10.1073/pnas.0709016105

From the Cover: A latitudinal diversity gradient in planktonic marine bacteria

Jed Fuhrman — 2008-06-04T10:24:12-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778.

For two centuries, biologists have documented a gradient of animal and plant biodiversity from the tropics to the poles but have been unable to agree whether it is controlled primarily by productivity, temperature, or historical factors. Recent reports that find latitudinal diversity gradients to be reduced or absent in some unicellular organisms and attribute this to their high abundance and dispersal capabilities would suggest that bacteria, the smallest and most abundant organisms, should exhibit no latitudinal pattern of diversity. We used amplified ribosomal intergenic spacer analysis (ARISA) whole-assemblage genetic fingerprinting to quantify species richness in 103 near-surface samples of marine bacterial plankton, taken from tropical to polar in both hemispheres. We found a significant latitudinal gradient in richness. The data can help to evaluate hypotheses about the cause of the gradient. The correlations of richness with latitude and temperature were similarly strong, whereas correlations with parameters relating to productivity (chlorophyll, annual primary productivity, bacterial abundance) and other variables (salinity and distance to shore) were much weaker. Despite the high abundance and potentially high dispersal of bacteria, they exhibit geographic patterns of species diversity that are similar to those seen in other organisms. The latitudinal gradient in marine bacteria supports the hypothesis that the kinetics of metabolism, setting the pace for life, has strong influence on diversity. 10.1073/pnas.0803070105

From the Cover: Regulation of surface architecture by symbiotic bacteria mediates host colonization

Cui Liu — 2008-03-12T00:55:45-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3951-3956.

Microbes occupy countless ecological niches in nature. Sometimes these environments may be on or within another organism, as is the case in both microbial infections and symbiosis of mammals. Unlike pathogens that establish opportunistic infections, hundreds of human commensal bacterial species establish a lifelong cohabitation with their hosts. Although many virulence factors of infectious bacteria have been described, the molecular mechanisms used during beneficial hostsymbiont colonization remain almost entirely unknown. The novel identification of multiple surface polysaccharides in the important human symbiont Bacteroides fragilis raised the critical question of how these molecules contribute to commensalism. To understand the function of the bacterial capsule during symbiotic colonization of mammals, we generated B. fragilis strains deleted in the global regulator of polysaccharide expression and isolated mutants with defects in capsule expression. Surprisingly, attempts to completely eliminate capsule production are not tolerated by the microorganism, which displays growth deficits and subsequent reversion to express capsular polysaccharides. We identify an alternative pathway by which B. fragilis is able to reestablish capsule production and modulate expression of surface structures. Most importantly, mutants expressing single, defined surface polysaccharides are defective for intestinal colonization compared with bacteria expressing a complete polysaccharide repertoire. Restoring the expression of multiple capsular polysaccharides rescues the inability of mutants to compete for commensalism. These findings suggest a model whereby display of multiple capsular polysaccharides provides essential functions for bacterial colonization during hostsymbiont mutualism. 10.1073/pnas.0709266105

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

Annelie Pernthaler — 2008-05-12T05:12:11-00:00

Proceedings of the National Academy of Sciences (8 May 2008), 0711303105.

Microorganisms play a fundamental role in the cycling of nutrients and energy on our planet. A common strategy for many microorganisms mediating biogeochemical cycles in anoxic environments is syntrophy, frequently necessitating close spatial proximity between microbial partners. We are only now beginning to fully appreciate the diversity and pervasiveness of microbial partnerships in nature, the majority of which cannot be replicated in the laboratory. One notable example of such cooperation is the interspecies association between anaerobic methane oxidizing archaea (ANME) and sulfate-reducing bacteria. These consortia are globally distributed in the environment and provide a significant sink for methane by substantially reducing the export of this potent greenhouse gas into the atmosphere. The interdependence of these currently uncultured microbes renders them difficult to study, and our knowledge of their physiological capabilities in nature is limited. Here, we have developed a method to capture select microorganisms directly from the environment, using combined fluorescence in situ hybridization and immunomagnetic cell capture. We used this method to purify syntrophic anaerobic methane oxidizing ANME-2c archaea and physically associated microorganisms directly from deep-sea marine sediment. Metagenomics, PCR, and microscopy of these purified consortia revealed unexpected diversity of associated bacteria, including Betaproteobacteria and a second sulfate-reducing Deltaproteobacterial partner. The detection of nitrogenase genes within the metagenome and subsequent demonstration of 15N2 incorporation in the biomass of these methane-oxidizing consortia suggest a possible role in new nitrogen inputs by these syntrophic assemblages. 10.1073/pnas.0711303105

From the Cover: Extreme accumulation of nucleotides in simulated hydrothermal pore systems

Philipp Baaske — 2008-03-06T10:58:53-00:00

Proceedings of the National Academy of Sciences, Vol. 104, No. 22. (29 May 2007), pp. 9346-9351.

We simulate molecular transport in elongated hydrothermal pore systems influenced by a thermal gradient. We find extreme accumulation of molecules in a wide variety of plugged pores. The mechanism is able to provide highly concentrated single nucleotides, suitable for operations of an RNA world at the origin of life. It is driven solely by the thermal gradient across a pore. On the one hand, the fluid is shuttled by thermal convection along the pore, whereas on the other hand, the molecules drift across the pore, driven by thermodiffusion. As a result, millimeter-sized pores accumulate even single nucleotides more than 108-fold into micrometer-sized regions. The enhanced concentration of molecules is found in the bulk water near the closed bottom end of the pore. Because the accumulation depends exponentially on the pore length and temperature difference, it is considerably robust with respect to changes in the cleft geometry and the molecular dimensions. Whereas thin pores can concentrate only long polynucleotides, thicker pores accumulate short and long polynucleotides equally well and allow various molecular compositions. This setting also provides a temperature oscillation, shown previously to exponentially replicate DNA in the protein-assisted PCR. Our results indicate that, for life to evolve, complicated active membrane transport is not required for the initial steps. We find that interlinked mineral pores in a thermal gradient provide a compelling high-concentration starting point for the molecular evolution of life. 10.1073/pnas.0609592104

Mining the diatom genome for the mechanism of biosilicification

Mark Brzezinski — 2008-02-06T06:24:42-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 5. (5 February 2008), pp. 1391-1392.

10.1073/pnas.0711994105

Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell

Yuichi Hongoh — 2008-04-28T21:06:57-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560.

Termites harbor a symbiotic gut microbial community that is responsible for their ability to thrive on recalcitrant plant matter. The community comprises diverse microorganisms, most of which are as yet uncultivable; the detailed symbiotic mechanism remains unclear. Here, we present the first complete genome sequence of a termite gut symbiont--an uncultured bacterium named Rs-D17 belonging to the candidate phylum Termite Group 1 (TG1). TG1 is a dominant group in termite guts, found as intracellular symbionts of various cellulolytic protists, without any physiological information. To acquire the complete genome sequence, we collected Rs-D17 cells from only a single host protist cell to minimize their genomic variation and performed isothermal whole-genome amplification. This strategy enabled us to reconstruct a circular chromosome (1,125,857 bp) encoding 761 putative protein-coding genes. The genome additionally contains 121 pseudogenes assigned to categories, such as cell wall biosynthesis, regulators, transporters, and defense mechanisms. Despite its apparent reductive evolution, the ability to synthesize 15 amino acids and various cofactors is retained, some of these genes having been duplicated. Considering that diverse termite-gut protists harbor TG1 bacteria, we suggest that this bacterial group plays a key role in the gut symbiotic system by stably supplying essential nitrogenous compounds deficient in lignocelluloses to their host protists and the termites. Our results provide a breakthrough to clarify the functions of and the interactions among the individual members of this multilayered symbiotic complex. 10.1073/pnas.0801389105

The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment

Luis Alcaraz — 2008-04-16T07:46:20-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5803-5808.

The Cuatro Cienegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels (<0.3 microM). Here, we report the complete genome sequence of Bacillus coahuilensis, a sporulating bacterium isolated from the water column of a desiccation lagoon in CCB. At 3.35 Megabases this is the smallest genome sequenced to date of a Bacillus species and provides insights into the origin, evolution, and adaptation of B. coahuilensis to the CCB environment. We propose that the size and complexity of the B. coahuilensis genome reflects the adaptation of an ancient marine bacterium to a novel environment, providing support to a "marine isolation origin hypothesis" that is consistent with the geology of CCB. This genomic adaptation includes the acquisition through horizontal gene transfer of genes involved in phosphorous utilization efficiency and adaptation to high-light environments. The B. coahuilensis genome sequence also revealed important ecological features of the bacterial community in CCB and offers opportunities for a unique glimpse of a microbe-dominated world last seen in the Precambrian. 10.1073/pnas.0800981105

From the Cover: Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses

Thomas Mock — 2008-02-06T06:20:44-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 5. (5 February 2008), pp. 1579-1584.

Formation of complex inorganic structures is widespread in nature. Diatoms create intricately patterned cell walls of inorganic silicon that are a biomimetic model for design and generation of three-dimensional silica nanostructures. To date, only relatively simple silica structures can be generated in vitro through manipulation of known diatom phosphoproteins (silaffins) and long-chain polyamines. Here, we report the use of genome-wide transcriptome analyses of the marine diatom Thalassiosira pseudonana to identify additional candidate gene products involved in the biological manipulation of silicon. Whole-genome oligonucleotide tiling arrays and tandem mass spectrometry identified transcripts for >8,000 genes, approx3,000 of which were not previously described and included noncoding and antisense RNAs. Gene-specific expression profiles detected a set of 75 genes induced only under low concentrations of silicon but not under low concentrations of nitrogen or iron, alkaline pH, or low temperatures. Most of these induced gene products were predicted to contain secretory signals and/or transmembrane domains but displayed no homology to known proteins. Over half of these genes were newly discovered, identified only through the use of tiling arrays. Unexpectedly, a common set of 84 genes were induced by both silicon and iron limitations, suggesting that biological manipulation of silicon may share pathways in common with iron or, alternatively, that iron may serve as a required cofactor for silicon processes. These results provide insights into the transcriptional and translational basis for the biological generation of elaborate silicon nanostructures by these ecologically important microbes. 10.1073/pnas.0707946105

From the Cover: Discovery of a widely distributed toxin biosynthetic gene cluster

Shaun Lee — 2008-04-16T07:45:17-00:00

Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5879-5884.

Bacteriocins represent a large family of ribosomally produced peptide antibiotics. Here we describe the discovery of a widely conserved biosynthetic gene cluster for the synthesis of thiazole and oxazole heterocycles on ribosomally produced peptides. These clusters encode a toxin precursor and all necessary proteins for toxin maturation and export. Using the toxin precursor peptide and heterocycle-forming synthetase proteins from the human pathogen Streptococcus pyogenes, we demonstrate the in vitro reconstitution of streptolysin S activity. We provide evidence that the synthetase enzymes, as predicted from our bioinformatics analysis, introduce heterocycles onto precursor peptides, thereby providing molecular insight into the chemical structure of streptolysin S. Furthermore, our studies reveal that the synthetase exhibits relaxed substrate specificity and modifies toxin precursors from both related and distant species. Given our findings, it is likely that the discovery of similar peptidic toxins will rapidly expand to existing and emerging genomes. 10.1073/pnas.0801338105

From the Cover: DNA barcodes distinguish species of tropical Lepidoptera

Mehrdad Hajibabaei — 2006-02-10T08:00:38-00:00

PNAS, Vol. 103, No. 4. (24 January 2006), pp. 968-971.

Although central to much biological research, the identification of species is often difficult. The use of DNA barcodes, short DNA sequences from a standardized region of the genome, has recently been proposed as a tool to facilitate species identification and discovery. However, the effectiveness of DNA barcoding for identifying specimens in species-rich tropical biotas is unknown. Here we show that cytochrome c oxidase I DNA barcodes effectively discriminate among species in three Lepidoptera families from Area de Conservacion Guanacaste in northwestern Costa Rica. We found that 97.9% of the 521 species recognized by prior taxonomic work possess distinctive cytochrome c oxidase I barcodes and that the few instances of interspecific sequence overlap involve very similar species. We also found two or more barcode clusters within each of 13 supposedly single species. Covariation between these clusters and morphological and/or ecological traits indicates overlooked species complexes. If these results are general, DNA barcoding will significantly aid species identification and discovery in tropical settings.

Pseudomonas syringae manipulates systemic plant defenses against pathogens and herbivores.

J Cui — 2005-06-02T10:31:33-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1791-1796.

Many pathogens are virulent because they specifically interfere with host defense responses and therefore can proliferate. Here, we report that virulent strains of the bacterial phytopathogen Pseudomonas syringae induce systemic susceptibility to secondary P. syringae infection in the host plant Arabidopsis thaliana. This systemic induced susceptibility (SIS) is in direct contrast to the well studied avirulence/R gene-dependent resistance response known as the hypersensitive response that elicits systemic acquired resistance. We show that P. syringae-elicited SIS is caused by the production of coronatine (COR), a pathogen-derived functional and structural mimic of the phytohormone jasmonic acid (JA). These data suggest that SIS may be a consequence of the previously described mutually antagonistic interaction between the salicylic acid and JA signaling pathways. Virulent P. syringae also has the potential to induce net systemic susceptibility to herbivory by an insect (Trichoplusia ni, cabbage looper), but this susceptibility is not caused by COR. Rather, consistent with its role as a JA mimic, COR induces systemic resistance to T. ni. These data highlight the complexity of defense signaling interactions among plants, pathogens, and herbivores.

Seasonal epidemics of cholera inversely correlate with the prevalence of environmental cholera phages.

SM Faruque — 2005-06-02T10:28:41-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1702-1707.

The relationship among (i) the local incidence of cholera, (ii) the prevalence in the aquatic environment of Vibrio cholerae, and (iii) bacterial viruses that attack potentially virulent O1 and O139 serogroup strains of this organism (cholera phages) was studied in Dhaka, Bangladesh. Over nearly a 3-year period, we found that significantly more environmental water samples contained either a phage or a phage-susceptible V. cholerae strain than both (P < 0.00001). The number of cholera patients varied seasonally during this period and frequently coincided with the presence of pathogenic V. cholerae strains in water samples that otherwise lacked detectable cholera phages. Interepidemic periods were characterized by water samples containing cholera phages but no viable bacteria. Our data support the conclusion that cholera phages can influence cholera seasonality and may also play a role in emergence of new V. cholerae pandemic serogroups or clones.

A genomic population genetics analysis of the pathogenic enterocyte effacement island in Escherichia coli: the search for the unit of selection.

A Castillo — 2005-06-02T10:25:17-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1542-1547.

Comparative genomic analysis is a powerful tool for understanding the history and organization of complete genomes. The mathematical tools of population genetics combined with genomic analysis provide a powerful approach to dissect heterogeneities in genome evolution. This study presents a hierarchical analysis of the enterocyte and effacement island (35 kb), which is found in the enteropathogenic and enterohemorrhagic strains in Escherichia coli and in Citrobacter rodentium. The locus of enterocyte and effacement in E. coli is considered to be a clonal unit inside a clonal organism and is expected to evolve as a single unit. This analysis examines the clonal assumption by determining genetic diversity, GC content, and the substitution rates at the different functional levels of (i) the complete pathogenic island, (ii) the five operons in which the island is organized, and (iii) for each of the individual 41 genes that comprise the locus. We find that there is a conserved region that is composed of genes that belong to the type III secretion system and that may be products of horizontal transfer. A more diverse region is composed of genes for secreted proteins and genes that we infer to be original components of the E. coli genome. This genetic mosaic seems to be differentially affected by selection and mutation. Our results suggest that recombination and selection may be breaking this structure so that different elements are, at best, weakly coupled in their evolution. These observations suggest that the units of selection are not the complete island, but rather, much smaller units that comprise the island.

Host population persistence in the face of introduced vector-borne diseases: Hawaii amakihi and avian malaria.

BL Woodworth — 2005-06-02T10:22:57-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1531-1536.

The past quarter century has seen an unprecedented increase in the number of new and emerging infectious diseases throughout the world, with serious implications for human and wildlife populations. We examined host persistence in the face of introduced vector-borne diseases in Hawaii, where introduced avian malaria and introduced vectors have had a negative impact on most populations of Hawaiian forest birds for nearly a century. We studied birds, parasites, and vectors in nine study areas from 0 to 1,800 m on Mauna Loa Volcano, Hawaii from January to October, 2002. Contrary to predictions of prior work, we found that Hawaii amakihi (Hemignathus virens), a native species susceptible to malaria, comprised from 24.5% to 51.9% of the avian community at three low-elevation forests (55-270 m). Amakihi were more abundant at low elevations than at disease-free high elevations, and were resident and breeding there. Infection rates were 24-40% by microscopy and 55-83% by serology, with most infected individuals experiencing low-intensity, chronic infections. Mosquito trapping and diagnostics provided strong evidence for year-round local transmission. Moreover, we present evidence that Hawaii amakihi have increased in low elevation habitats on southeastern Hawaii Island over the past decade. The recent emergent phenomenon of recovering amakihi populations at low elevations, despite extremely high prevalence of avian malaria, suggests that ecological or evolutionary processes acting on hosts or parasites have allowed this species to recolonize low-elevation habitats. A better understanding of the mechanisms allowing coexistence of hosts and parasites may ultimately lead to tools for mitigating disease impacts on wildlife and human populations.

Predicting the risk of extinction from shared ecological characteristics.

JS Kotiaho — 2005-05-02T21:21:16-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1963-1967.

Understanding the ultimate causes of population declines and extinction is vital in our quest to stop the currently rampant biodiversity loss. Comparison of ecological characteristics between threatened and nonthreatened species may reveal these ultimate causes. Here, we report an analysis of ecological characteristics of 23 threatened and 72 nonthreatened butterfly species. Our analysis reveals that threatened butterflies are characterized by narrow niche breadth, restricted resource distribution, poor dispersal ability, and short flight period. Based on the characteristics, we constructed an ecological extinction risk rank and predicted which of the currently nonthreatened species are at the highest risk of extinction. Our analysis reveals that two species currently classified as nonthreatened are, in fact, at high risk of extinction, and that the status of a further five species should be reconsidered.

Soil animals alter plant litter diversity effects on decomposition.

S Hättenschwiler — 2005-06-02T10:19:20-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1519-1524.

Most of the terrestrial net primary production enters the decomposer system as dead organic matter, and the subsequent recycling of C and nutrients are key processes for the functioning of ecosystems and the delivery of ecosystem goods and services. Although climatic and substrate quality controls are reasonably well understood, the functional role of biodiversity for biogeochemical cycles remains elusive. Here we ask how altering litter species diversity affects species-specific decomposition rates and whether large litter-feeding soil animals control the litter diversity-function relationship in a temperate forest ecosystem. We found that decomposition of a given litter species changed greatly in the presence of litters from other cooccurring species despite unaltered climatic conditions and litter chemistry. Most importantly, soil fauna determined the magnitude and direction of litter diversity effects. Our data show that litter species richness and soil fauna interactively determine rates of decomposition in a temperate forest, suggesting a combination of bottom-up and top-down controls of litter diversity effects on ecosystem C and nutrient cycling. These results provide evidence that, in ecosystems supporting a well developed soil macrofauna community, animal activity plays a fundamental role for altered decomposition in response to changing litter diversity, which in turn has important implications for biogeochemical cycles and the long-term functioning of ecosystems with ongoing biodiversity loss.

Experiments investigating cooperative types in humans: a complement to evolutionary theory and simulations.

R Kurzban — 2005-06-02T10:16:41-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1803-1807.

Unlike other species, humans cooperate in large, distantly related groups, a fact that has long presented a puzzle to biologists. The pathway by which adaptations for large-scale cooperation among nonkin evolved in humans remains a subject of vigorous debate. Results from theoretical analyses and agent-based simulations suggest that evolutionary dynamics need not yield homogeneous populations, but can instead generate a polymorphic population that consists of individuals who vary in their degree of cooperativeness. These results resonate with the recent increasing emphasis on the importance of individual differences in understanding and modeling behavior and dynamics in experimental games and decision problems. Here, we report the results of laboratory experiments that complement both theory and simulation results. We find that our subjects fall into three types, an individual's type is stable, and a group's cooperative outcomes can be remarkably well predicted if one knows its type composition. Reciprocal types, who contribute to the public good as a positive function of their beliefs about others' contributions, constitute the majority (63%) of players; cooperators and free-riders are also present in our subject population. Despite substantial behavioral differences, earnings among types are statistically identical. Our results support the view that our human subject population is in a stable, polymorphic equilibrium of types.

Feedbacks and the coevolution of plants and atmospheric CO2.

DJ Beerling — 2005-06-02T10:15:00-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1302-1305.

The coupled evolution of land plants, CO2, and climate over the last half billion years has maintained atmospheric CO2 concentrations within finite limits, indicating the involvement of a complex network of geophysiological feedbacks. But insight into this important regulatory network is extremely limited. Here we present a systems analysis of the physiological and geochemical processes involved, identifying new positive and negative feedbacks between plants and CO2 on geological time scales. Positive feedbacks accelerated falling CO2 concentrations during the evolution and diversification of terrestrial ecosystems in the Paleozoic and enhanced rising CO2 concentrations across the Triassic-Jurassic boundary during flood basalt eruptions. The existence of positive feedbacks reveals the unexpected destabilizing influence of the biota in climate regulation that led to environmental modifications accelerating rates of terrestrial plant and animal evolution in the Paleozoic.

Life history biology of early land plants: deciphering the gametophyte phase.

TN Taylor — 2005-06-02T08:10:37-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 16. (19 April 2005), pp. 5892-5897.

The ca. 400-million-year-old Rhynie chert biota represents a benchmark for studies of early terrestrial ecosystems. The exquisite preservation of the organisms documents an ancient biodiversity that also includes various levels of biological interaction. Absent from the picture until recently has been detailed information about the development of the gametophyte phase and the alternation of generations of the macroplants in this ecosystem. Here, we trace the development of the gametophyte phase of Aglaophyton, an early land plant with an unusual complement of structural and morphological characters. Mature gametophytes consist of a fleshy protocorm attached to the substrate by basal rhizoids; arising from the upper surface are one to several upright gametangiophores bearing multiple gametangia. Stomata are present on the upper surface of the protocorm and gametangiophore, and endomycorrhizal fungi extend throughout the gametophyte. Gametophytes are unisexual, producing either antheridiophores or archegoniophores. There is no evidence that gametophytes later become hermaphroditic. The sexual dimorphism of the Rhynie chert gametophytes is inconsistent with theoretical ideas about the haploid phase of early land plants. The gametophyte phase of early land plants can now be considered within an ecological and evolutionary framework that, in turn, can be used to develop hypotheses about some aspects of the population dynamics and growth of these early land plants.

Big brains, enhanced cognition, and response of birds to novel environments.

D Sol — 2005-06-01T15:35:46-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5460-5465.

The widely held hypothesis that enlarged brains have evolved as an adaptation to cope with novel or altered environmental conditions lacks firm empirical support. Here, we test this hypothesis for a major animal group (birds) by examining whether large-brained species show higher survival than small-brained species when introduced to nonnative locations. Using a global database documenting the outcome of >600 introduction events, we confirm that avian species with larger brains, relative to their body mass, tend to be more successful at establishing themselves in novel environments. Moreover, we provide evidence that larger brains help birds respond to novel conditions by enhancing their innovation propensity rather than indirectly through noncognitive mechanisms. These findings provide strong evidence for the hypothesis that enlarged brains function, and hence may have evolved, to deal with changes in the environment.

Interaction strength combinations and the overfishing of a marine food web.

J Bascompte — 2005-06-01T15:29:31-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5443-5447.

The stability of ecological communities largely depends on the strength of interactions between predators and their prey. Here we show that these interaction strengths are structured nonrandomly in a large Caribbean marine food web. Specifically, the cooccurrence of strong interactions on two consecutive levels of food chains occurs less frequently than expected by chance. Even when they occur, these strongly interacting chains are accompanied by strong omnivory more often than expected by chance. By using a food web model, we show that these interaction strength combinations reduce the likelihood of trophic cascades after the overfishing of top predators. However, fishing selectively removes predators that are overrepresented in strongly interacting chains. Hence, the potential for strong community-wide effects remains a threat.

Extinction dynamics in experimental metapopulations.

J Molofsky — 2005-05-29T16:55:04-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 10. (8 March 2005), pp. 3726-3731.

Metapopulation theory provides a framework for understanding population persistence in fragmented landscapes and as such has been widely used in conservation biology to inform management of fragmented populations. However, classical metapopulation theory [Levins, R. (1970) Lect. Notes Math. 2, 75-107] ignores metapopulation structure and local population dynamics, both of which may affect extinction dynamics. Here, we investigate metapopulation dynamics in populations that are subject to different migration rates by using experimental metapopulations of the annual plant Cardamine pensylvanica. As predicted by classical metapopulation theory, connected populations persisted longer than did isolated populations, but the relationship between migration and persistence time was nonlinear. Extinction risk sharply increased as the distance between local populations increased above a threshold value that was consistent with stochastic simulations and calculation of metapopulation capacity [Hanski, I. & Ovaskainen, O. (2000) Nature 404, 755-758]. In addition, the most connected metapopulations did not have the highest persistence levels. Stochastic simulations indicated an increase in extinction risk with the highest migration rates. Moreover, calculation of population coherence [Earn, D. J. D., Levin, S. A. & Rohani, P. (2000) Science 290, 1360-1364], a metric that predicts synchronous cycles, indicated that continuous populations should cycle in phase, resulting in an increased extinction risk. Determining empirically the optimal migration level to improve survival chances will be challenging for any natural population. Migration rates that would not increase migration above the threshold value would be ineffectual, but migration rates that would homogenize local densities could increase the risk of coherent oscillations and enhance extinction risk.

Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes.

CF Baer — 2005-06-02T08:04:30-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 16. (19 April 2005), pp. 5785-5790.

Deleterious mutations are of fundamental importance to all aspects of organismal biology. Evolutionary geneticists have expended tremendous effort to estimate the genome-wide rate of mutation and the effects of new mutations on fitness, but the degree to which genomic mutational properties vary within and between taxa is largely unknown, particularly in multicellular organisms. Beginning with two highly inbred strains from each of three species in the nematode family Rhabditidae (Caenorhabditis briggsae, Caenorhabditis elegans, and Oscheius myriophila), we allowed mutations to accumulate in the relative absence of natural selection for 200 generations. We document significant variation in the rate of decay of fitness because of new mutations between strains and between species. Estimates of the per-generation mutational decay of fitness were very consistent within strains between assays 100 generations apart. Rate of mutational decay in fitness was positively associated with genomic mutation rate and negatively associated with average mutational effect. These results provide unambiguous experimental evidence for substantial variation in genome-wide properties of mutation both within and between species and reinforce conclusions from previous experiments that the cumulative effects on fitness of new mutations can differ markedly among related taxa.

Atmospheric brown clouds: impacts on South Asian climate and hydrological cycle.

V Ramanathan — 2005-06-01T15:20:14-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5326-5333.

South Asian emissions of fossil fuel SO(2) and black carbon increased approximately 6-fold since 1930, resulting in large atmospheric concentrations of black carbon and other aerosols. This period also witnessed strong negative trends of surface solar radiation, surface evaporation, and summer monsoon rainfall. These changes over India were accompanied by an increase in atmospheric stability and a decrease in sea surface temperature gradients in the Northern Indian Ocean. We conducted an ensemble of coupled ocean-atmosphere simulations from 1930 to 2000 to understand the role of atmospheric brown clouds in the observed trends. The simulations adopt the aerosol radiative forcing from the Indian Ocean experiment observations and also account for global increases in greenhouse gases and sulfate aerosols. The simulated decreases in surface solar radiation, changes in surface and atmospheric temperatures over land and sea, and decreases in monsoon rainfall are similar to the observed trends. We also show that greenhouse gases and sulfates, by themselves, do not account for the magnitude or even the sign in many instances, of the observed trends. Thus, our simulations suggest that absorbing aerosols in atmospheric brown clouds may have played a major role in the observed regional climate and hydrological cycle changes and have masked as much as 50% of the surface warming due to the global increase in greenhouse gases. The simulations also raise the possibility that, if current trends in emissions continue, the subcontinent may experience a doubling of the drought frequency in the coming decades.

Evolutionary emergence of size-structured food webs.

N Loeuille — 2005-06-02T07:51:33-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 16. (19 April 2005), pp. 5761-5766.

Explaining the structure of terrestrial and aquatic food webs remains one of the most important challenges of ecological theory. Most existing models use emergent properties of food webs, such as diversity and connectance as parameters, to determine other food-web descriptors. Lower-level processes, in particular adaptation (whether by behavioral, developmental, or evolutionary mechanisms), are usually not considered. Here, we show that complex, realistic food webs may emerge by evolution from a single ancestor based on very simple ecological and evolutionary rules. In our model, adaptation acts on body size, whose impact on the metabolism and interactions of organisms is well established. Based on parameters defined at the organism scale, the model predicts emergent properties at the food-web scale. Variations of two key parameters (width of consumption niche and competition intensity) allow very different food-web structures and functionings to emerge, which are similar to those observed in some of the best-documented food webs.

Making research accessible: National Institutes of Health (NIH) public access and PNAS open access policies.

NR Cozzarelli — 2005-06-01T15:17:50-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005)

Global energy gradients and size in colonial organisms: worker mass and worker number in ant colonies.

M Kaspari — 2005-06-01T14:49:51-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 5079-5083.

Body mass shapes processes from cell metabolism to community dynamics. Little is known, however, about how the average body mass of individuals varies among ecological communities. Ants alter colony mass by independently changing worker mass and/or worker number. In a survey of 49 ecosystems from tundra to tropical rainforest, average worker mass and worker number were uncorrelated (r(s) = 0.2, P > 0.14) and varied 100-fold. Data supported the hypothesis that higher mean monthly temperatures, T, reduce worker mass by increasing metabolic costs during worker development. In contrast, worker number was unimodal over a 1,000-fold gradient of net primary productivity (NPP, g of carbon per m2 per yr), a measure of organic carbon available to consumers. At the lowest levels of NPP colonies appeared to be carbon-limited; above 60 g of carbon per m2 per yr average worker number decreased to a global low. This decline in worker number with increasing NPP supports the hypothesis that abundant carbon ameliorates the Achilles heel of small taxa in competition with large taxa: their relatively high metabolic demands. Higher predation rates in resource-rich environments may also play a role in limiting worker number. In all, about half the global variation in worker mass and number was accounted for by gradients of NPP and T. Changes in global temperature and rainfall may thus mold gradients of ectotherm size, with consequences for the structure and function of the ecosystems.

Recent biological invasion may hasten invasional meltdown by accelerating historical introductions.

ED Grosholz — 2005-05-03T08:47:28-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1088-1091.

Biological invasions are rapidly producing planet-wide changes in biodiversity and ecosystem function. In coastal waters of the U.S., >500 invaders have become established, and new introductions continue at an increasing rate. Although most species have little impact on native communities, some initially benign introductions may occasionally turn into damaging invasions, although such introductions are rarely documented. Here, I demonstrate that a recently introduced crab has resulted in the rapid spread and increase of an introduced bivalve that had been rare in the system for nearly 50 yr. This increase has occurred through the positive indirect effects of predation by the introduced crab on native bivalves. I used field and laboratory experiments to show that the mechanism is size-specific predation interacting with the different reproductive life histories of the native (protandrous hermaphrodite) and the introduced (dioecious) bivalves. These results suggest that positive interactions among the hundreds of introduced species that are accumulating in coastal systems could result in the rapid transformation of previously benign introductions into aggressively expanding invasions. Even if future management efforts reduce the number of new introductions, given the large number of species already present, there is a high potential for positive interactions to produce many future management problems. Given that invasional meltdown is now being documented in natural systems, I suggest that coastal systems may be closer to this threshold than currently believed.

Human modification of global water vapor flows from the land surface.

LJ Gordon — 2005-08-17T06:26:32-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 21. (24 May 2005), pp. 7612-7617.

It is well documented that human modification of the hydrological cycle has profoundly affected the flow of liquid water across the Earth's land surface. Alteration of water vapor flows through land-use changes has received comparatively less attention, despite compelling evidence that such alteration can influence the functioning of the Earth System. We show that deforestation is as large a driving force as irrigation in terms of changes in the hydrological cycle. Deforestation has decreased global vapor flows from land by 4% (3,000 km(3)/yr), a decrease that is quantitatively as large as the increased vapor flow caused by irrigation (2,600 km(3)/yr). Although the net change in global vapor flows is close to zero, the spatial distributions of deforestation and irrigation are different, leading to major regional transformations of vapor-flow patterns. We analyze these changes in the light of future land-use-change projections that suggest widespread deforestation in sub-Saharan Africa and intensification of agricultural production in the Asian monsoon region. Furthermore, significant modification of vapor flows in the lands around the Indian Ocean basin will increase the risk for changes in the behavior of the Asian monsoon system. This analysis suggests that the need to increase food production in one region may affect the capability to increase food production in another. At the scale of the Earth as a whole, our results emphasize the need for climate models to take land-use change, in both land cover and irrigation, into account.

Characterizing wildfire regimes in the United States.

BD Malamud — 2005-06-01T08:12:02-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 13. (29 March 2005), pp. 4694-4699.

Wildfires statistics for the conterminous United States (U.S.) are examined in a spatially and temporally explicit manner. We use a high-resolution data set consisting of 88,916 U.S. Department of Agriculture Forest Service wildfires over the time period 1970-2000 and consider wildfire occurrence as a function of ecoregion (land units classified by climate, vegetation, and topography), ignition source (anthropogenic vs. lightning), and decade. For the conterminous U.S., we (i) find that wildfires exhibit robust frequency-area power-law behavior in 18 different ecoregions; (ii) use normalized power-law exponents to compare the scaling of wildfire-burned areas between ecoregions, finding a systematic change from east to west; (iii) find that wildfires in the eastern third of the U.S. have higher power-law exponents for anthropogenic vs. lightning ignition sources; and (iv) calculate recurrence intervals for wildfires of a given burned area or larger for each ecoregion, allowing for the classification of wildfire regimes for probabilistic hazard estimation in the same vein as is now used for earthquakes.

Phytoplankton species richness scales consistently from laboratory microcosms to the world's oceans.

VH Smith — 2005-06-01T07:23:19-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 12. (22 March 2005), pp. 4393-4396.

Species-area relationships have been observed for virtually all major groups of macroorganisms that have been studied to date but have not been explored for microscopic phytoplankton algae, which are the dominant producers in many freshwater and marine ecosystems. Our analyses of data from 142 different natural ponds, lakes, and oceans and 239 experimental ecosystems reveal a strong species-area relationship with an exponent that is invariant across ecosystems that span >15 orders of magnitude in spatial extent. A striking result is that the species-area relationship derived from small-scale experimental studies correctly scales up to natural aquatic ecosystems. These results significantly broaden our knowledge of the effects of island size on biodiversity and also confirm the relevance of experimentally derived data to the analysis and understanding of larger-scale ecological patterns. In addition, they confirm that patterns in microbial diversity are strongly consistent with those that have been repeatedly reported in the literature for macroorganisms.

Functional- and abundance-based mechanisms explain diversity loss due to N fertilization.

KN Suding — 2005-06-01T06:56:35-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 12. (22 March 2005), pp. 4387-4392.

Human activities have increased N availability dramatically in terrestrial and aquatic ecosystems. Extensive research demonstrates that local plant species diversity generally declines in response to nutrient enrichment, yet the mechanisms for this decline remain unclear. Based on an analysis of >900 species responses from 34 N-fertilization experiments across nine terrestrial ecosystems in North America, we show that both trait-neutral and trait-based mechanisms operate simultaneously to influence diversity loss as production increases. Rare species were often lost because of soil fertilization, randomly with respect to traits. The risk of species loss due to fertilization ranged from >60% for the rarest species to 10% for the most abundant species. Perennials, species with N-fixing symbionts, and those of native origin also experienced increased risk of local extinction after fertilization, regardless of their initial abundance. Whereas abundance was consistently important across all systems, functional mechanisms were often system-dependent. As N availability continues to increase globally, management that focuses on locally susceptible functional groups and generally susceptible rare species will be essential to maintain biodiversity.

Neutral microepidemic evolution of bacterial pathogens.

C Fraser — 2005-02-11T16:24:23-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1968-1973.

Understanding bacterial population genetics is vital for interpreting the response of bacterial populations to selection pressures such as antibiotic treatment or vaccines targeted at only a subset of strains. The evolution of transmissible bacteria occurs by mutation and localized recombination and is influenced by epidemiological as well as molecular processes. We demonstrate that the observed population genetic structure of three important human pathogens, Streptococcus pneumoniae, Neisseria meningitidis, and Staphylococcus aureus, can be explained by using a simple evolutionary model that is based on neutral mutational drift, modulated by recombination, and which incorporates the impact of epidemic transmission in local populations. The predictions of this neutral "microepidemic" model are found to closely fit observed genetic relatedness distributions of bacteria sampled from their natural population, and it provides estimates of the relative rate of recombination that agree well with empirical estimates. The analysis suggests the emergence of neutral bacterial population structure from overlapping microepidemics within clustered host populations and provides insight into the nature and size distribution of these clusters. These findings challenge the assumption that strains of bacterial pathogens differ markedly in relative fitness.

Calling for help is independently modulated by brain systems underlying goal-directed behavior and threat perception.

AS Fox — 2005-05-30T15:56:10-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 11. (15 March 2005), pp. 4176-4179.

In primates, during times of need, calling for help is a universal experience. Calling for help recruits social support and promotes survival. However, calling for help also can attract predators, and it is adaptive to inhibit calls for help when a potential threat is perceived. Based on this, we hypothesized that individual differences in calling for help would be related to the activity of brain systems that mediate goal-directed behavior and the detection of threat. By using high-resolution positron emission tomography in rhesus monkeys undergoing social separation, we demonstrate that increased [18F]-fluoro-2-deoxy-D-glucose uptake in the right dorsolateral prefrontal cortex and decreased uptake in the amygdala independently predict individual differences in calling for help. When taken together, these two regions account for 76% of the variance in calling for help. This result suggests that the drive for affiliation and the perception of threat determine the intensity of an individual's behavior during separation. These findings in monkeys are relevant to humans and provide a conceptual neural framework to understand individual differences in how primates behave when in need of social support.

Honey bees navigate according to a map-like spatial memory.

R Menzel — 2005-05-16T10:03:43-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 3040-3045.

By using harmonic radar, we report the complete flight paths of displaced bees. Test bees forage at a feeder or are recruited by a waggle dance indicating the feeder. The flights are recorded after the bees are captured when leaving the hive or the feeder and are released at an unexpected release site. A sequence of behavioral routines become apparent: (i) initial straight flights in which they fly the course that they were on when captured (foraging bees) or that they learned during dance communication (recruited bees); (ii) slow search flights with frequent changes of direction in which they attempt to "get their bearings"; and (iii) straight and rapid flights directed either to the hive or first to the feeding station and then to the hive. These straight homing flights start at locations all around the hive and at distances far out of the visual catchment area around the hive or the feeding station. Two essential criteria of a map-like spatial memory are met by these results: bees can set course at any arbitrary location in their familiar area, and they can choose between at least two goals. This finding suggests a rich, map-like organization of spatial memory in navigating honey bees.

Heritability and genetic constraints of life-history trait evolution in preindustrial humans.

JE Pettay — 2005-05-16T10:03:01-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2838-2843.

An increasing number of studies have documented phenotypic selection on life-history traits in human populations, but less is known of the heritability and genetic constraints that mediate the response to selection on life-history traits in humans. We collected pedigree data for four generations of preindustrial (1745-1900) Finns who lived in premodern fertility and mortality conditions, and by using a restricted maximum-likelihood animal-model framework, we estimated the heritability of and genetic correlations between a suite of life-history traits and two alternative measures of fitness. First, we demonstrate high heritability of key life-history traits (fecundity, interbirth interval, age at last reproduction, and adult longevity) and measures of fitness (individual lambda and lifetime reproductive success) for females but not for males. This sex difference may have arisen because most of the measured traits are under physiological control of the female, such that a male's fitness in monogamous societies may depend mainly on the reproductive quality of his spouse. We found strong positive genetic correlations between female age at first reproduction and longevity, and between interbirth intervals and longevity, suggesting reduced life spans in females who either started to breed relatively early or who then bred frequently. Our results suggest that key female life-history traits in this premodern human population had high heritability and may have responded to natural selection. However genetic constraints between longevity and reproductive life-history traits may have constrained the evolution of life history and facilitated the maintenance of additive genetic variance in key life-history traits.

Ecosystem recovery after climatic extremes enhanced by genotypic diversity.

TB Reusch — 2005-05-16T10:02:19-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2826-2831.

Contemporary climate change is characterized both by increasing mean temperature and increasing climate variability such as heat waves, storms, and floods. How populations and communities cope with such climatic extremes is a question central to contemporary ecology and biodiversity conservation. Previous work has shown that species diversity can affect ecosystem functioning and resilience. Here, we show that genotypic diversity can replace the role of species diversity in a species-poor coastal ecosystem, and it may buffer against extreme climatic events. In a manipulative field experiment, increasing the genotypic diversity of the cosmopolitan seagrass Zostera marina enhanced biomass production, plant density, and faunal abundance, despite near-lethal water temperatures due to extreme warming across Europe. Net biodiversity effects were explained by genotypic complementarity rather than by selection of particularly robust genotypes. Positive effects on invertebrate fauna suggest that genetic diversity has second-order effects reaching higher trophic levels. Our results highlight the importance of maintaining genetic as well as species diversity to enhance ecosystem resilience in a world of increasing uncertainty.

Strategic interactions in multi-institutional epidemics of antibiotic resistance.

DL Smith — 2005-05-16T10:01:25-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 3153-3158.

The increasing frequency of antibiotic resistance in hospital-acquired infections is a major public health concern that has both biological and economic causes. Here we develop conceptual mathematical models that couple the economic incentives and population biology of hospital infection control (HIC). We show that the optimal investment by a hospital for HIC changes with the proportion of patients already colonized with antibiotic-resistant bacteria (ARB) at the time of admission. As that proportion increases, the optimal behavior of a hospital is to increase spending to control ARB with low transmissibility and decrease spending on those with high transmissibility. In some cases, the global optimum investment in HIC can shift discontinuously from one that contains transmission to a do-nothing policy once the proportion already colonized at the time of admission becomes too great. We also show that investments in HIC are determined by a strategic game when several hospitals share patients. Hospitals acting selfishly and rationally will free-ride on the investments of other hospitals, and the level of free-riding should increase with the number of other hospitals in the area. Thus, in areas with many hospitals, the rational strategy for each hospital is to spend less than in areas with few hospitals. Thus, we predict that transmission rates and the prevalence of ARB should be higher in urban hospitals, for instance, compared with rural hospitals. We conclude that regional coordination and planning for HIC is an essential element of public health planning for hospital-acquired infections.

Cross-modal integration in a dart-poison frog.

PM Narins — 2005-05-16T08:19:36-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2425-2429.

The mechanisms by which the brain binds together inputs from separate sensory modalities to effect a unified percept of events are poorly understood. This phenomenon was studied in males of the dart-poison frog Epipedobates femoralis. These animals physically and vigorously defend their territories against conspecific calling intruders. In prior field studies with an electromechanical model frog, we were able to experimentally evoke this aggressive behavior only when an auditory cue (advertisement call) was presented simultaneously with a visual cue (vocal-sac pulsations). In the present field experiments, we used a modified version of the electromechanical model frog to present territorial males with visual and auditory cues separated by experimentally introduced temporal delays or spatial disparities to probe temporal and spatial integration in this animal. In temporal integration experiments, bimodal stimuli with temporal overlap during calling bouts consistently evoked aggressive behavior; stimuli lacking bimodal temporal overlap were relatively ineffective at the same task. In spatial integration studies, despite presenting the components of the bimodal stimulus with an initial spatial disparity of up to 12 cm, fighting behavior persisted. These results demonstrate that temporal and spatial integration may be reliably estimated in a freely behaving animal in its natural habitat and that we can use aggressive behavior in this species as an index of cross-modal integration in the field.

Indirect reciprocity, image scoring, and moral hazard.

H Brandt — 2005-05-16T08:18:45-00:00

Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2666-2670.

Whether one-shot interactions can stably sustain mutual cooperation if they are based on a minimal form of reputation building has been the subject of considerable debate. We show by mathematical modeling that the answer is positive if we assume an individual's social network evolves in time. In this case, a stable mixture of discriminating and undiscriminating altruists can be proof against invasion by defectors. This sheds light on current discussions about the merits of different types of moral assessment, an issue where theoretical arguments and experimental findings seem at odds.Unexpectedly, our approach also relates to the proverbial observation that people tend to become more tightfisted with age.