Thu, 21 Aug 2008 14:20:19 BST CiteULike: stajich's Schultz http://www.citeulike.org/user/stajich/author/Schultz CiteULike.org en-gb Copyright © 2004-2008 citeulike.org http://www.citeulike.org/user/stajich/article/229 <i>Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.</i><br /><br />The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome and a key experimental tool for biomedical research. Here, we report the results of an international collaboration to produce a high-quality draft sequence of the mouse genome. We also present an initial comparative analysis of the mouse and human genomes, describing some of the insights that can be gleaned from the two sequences. We discuss topics including the analysis of the evolutionary forces shaping the size, structure and sequence of the genomes; the conservation of large-scale synteny across most of the genomes; the much lower extent of sequence orthology covering less than half of the genomes; the proportions of the genomes under selection; the number of protein-coding genes; the expansion of gene families related to reproduction and immunity; the evolution of proteins; and the identification of intraspecies polymorphism. Initial sequencing and comparative analysis of the mouse genome. RH Waterston K Lindblad-Toh E Birney J Rogers JF Abril P Agarwal R Agarwala R Ainscough M Alexandersson P An SE Antonarakis J Attwood R Baertsch J Bailey K Barlow S Beck E Berry B Birren T Bloom P Bork M Botcherby N Bray MR Brent DG Brown SD Brown C Bult J Burton J Butler RD Campbell P Carninci S Cawley F Chiaromonte AT Chinwalla DM Church M Clamp C Clee FS Collins LL Cook RR Copley A Coulson O Couronne J Cuff V Curwen T Cutts M Daly R David J Davies KD Delehaunty J Deri ET Dermitzakis C Dewey NJ Dickens M Diekhans S Dodge I Dubchak DM Dunn SR Eddy L Elnitski RD Emes P Eswara E Eyras A Felsenfeld GA Fewell P Flicek K Foley WN Frankel LA Fulton RS Fulton TS Furey D Gage RA Gibbs G Glusman S Gnerre N Goldman L Goodstadt D Grafham TA Graves ED Green S Gregory R Guigó M Guyer RC Hardison D Haussler Y Hayashizaki LW Hillier A Hinrichs W Hlavina T Holzer F Hsu A Hua T Hubbard A Hunt I Jackson DB Jaffe LS Johnson M Jones TA Jones A Joy M Kamal EK Karlsson D Karolchik A Kasprzyk J Kawai E Keibler C Kells WJ Kent A Kirby DL Kolbe I Korf RS Kucherlapati EJ Kulbokas D Kulp T Landers JP Leger S Leonard I Letunic R Levine J Li M Li C Lloyd S Lucas B Ma DR Maglott ER Mardis L Matthews E Mauceli JH Mayer M McCarthy WR McCombie S McLaren K McLay JD McPherson J Meldrim B Meredith JP Mesirov W Miller TL Miner E Mongin KT Montgomery M Morgan R Mott JC Mullikin DM Muzny WE Nash JO Nelson MN Nhan R Nicol Z Ning C Nusbaum MJ O'Connor Y Okazaki K Oliver E Overton-Larty L Pachter G Parra KH Pepin J Peterson P Pevzner R Plumb CS Pohl A Poliakov TC Ponce CP Ponting S Potter M Quail A Reymond BA Roe KM Roskin EM Rubin AG Rust R Santos V Sapojnikov B Schultz J Schultz MS Schwartz S Schwartz C Scott S Seaman S Searle T Sharpe A Sheridan R Shownkeen S Sims JB Singer G Slater A Smit DR Smith B Spencer A Stabenau N Stange-Thomann C Sugnet M Suyama G Tesler J Thompson D Torrents E Trevaskis J Tromp C Ucla A Ureta-Vidal JP Vinson AC Von Niederhausern CM Wade M Wall RJ Weber RB Weiss MC Wendl AP West K Wetterstrand R Wheeler S Whelan J Wierzbowski D Willey S Williams RK Wilson E Winter KC Worley D Wyman S Yang SP Yang EM Zdobnov MC Zody ES Lander doi:10.1038/nature01262 Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562. 2004-11-22T00:17:30-00:00 2002 Nature 0028-0836 420 6915 520 562 comparative_genomics genome_paper mouse http://www.citeulike.org/user/stajich/article/519673 <i>Science, Vol. 299, No. 5605. (17 January 2003), pp. 386-388.</i> Ancient Tripartite Coevolution in the Attine Ant-Microbe Symbiosis Cameron Currie Bess Wong Alison Stuart Ted Schultz Stephen Rehner Ulrich Mueller Gi-Ho Sung Joseph Spatafora Neil Straus doi:10.1126/science.1078155 Science, Vol. 299, No. 5605. (17 January 2003), pp. 386-388. 2006-02-24T05:11:41-00:00 2003 Science 299 5605 386 388 ant coevolution fungi mutalism symbiosis http://www.citeulike.org/user/stajich/article/904006 <i>Nature, Vol. 443, No. 7113., pp. 818-822.</i> Reconstructing the early evolution of Fungi using a six-gene phylogeny Timothy James Frank Kauff Conrad Schoch Brandon Matheny Valérie Hofstetter Cymon Cox Gail Celio Cécile Gueidan Emily Fraker Jolanta Miadlikowska Thorsten Lumbsch Alexandra Rauhut Valérie Reeb Elizabeth Arnold Anja Amtoft Jason Stajich Kentaro Hosaka Gi-Ho Sung Desiree Johnson Ben O’rourke Michael Crockett Manfred Binder Judd Curtis Jason Slot Zheng Wang Andrew Wilson Arthur Schüßler Joyce Longcore Kerry O’donnell Sharon Mozley-Standridge David Porter Peter Letcher Martha Powell John Taylor Merlin White Gareth Griffith David Davies Richard Humber Joseph Morton Junta Sugiyama Amy Rossman Jack Rogers Don Pfister David Hewitt Karen Hansen Sarah Hambleton Robert Shoemaker Jan Kohlmeyer Brigitte Volkmann-Kohlmeyer Robert Spotts Maryna Serdani Pedro Crous Karen Hughes Kenji Matsuura Ewald Langer Gitta Langer Wendy Untereiner Robert Lücking Burkhard Büdel David Geiser André Aptroot Paul Diederich Imke Schmitt Matthias Schultz Rebecca Yahr David Hibbett François Lutzoni David Mclaughlin Joseph Spatafora Rytas Vilgalys doi:10.1038/nature05110 Nature, Vol. 443, No. 7113., pp. 818-822. 2006-10-18T20:13:00-00:00 Nature 0028-0836 443 7113 818 822 Nature Publishing Group fungi phylogeny