Tag 08-smbe [57 articles] Export

Recent papers classified by the tag 08-smbe.

	Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 271, No. 1554. (7 November 2004), pp. 2201-2207. by V. J. Lynch, J. J. Roth, K. Takahashi, et al.C. W. Dunn, D. F. Nonaka, G. F. Stopper, G. P. Wagner posted to 08-smbe by smbe2008 on 2008-06-02 18:10:16 as
	Predicting evolutionary patterns of mammalian teeth from development. [My Copy] Nature, Vol. 449, No. 7161. (27 September 2007), pp. 427-432. by Kathryn D. Kavanagh, Alistair R. Evans, Jukka Jernvall posted to 08-smbe by smbe2008 on 2008-06-02 18:08:15 as along with 2 people and 1 group cparada dpollard EisenLab
	The genomic and epidemiological dynamics of human influenza A virus [My Copy] Nature (16 April 2008) by Andrew Rambaut, Oliver G. Pybus, Martha I. Nelson, Cecile Viboud, Jeffery K. Taubenberger, Edward C. Holmes posted to 08-smbe by smbe2008 on 2008-06-02 18:06:55 as along with 4 people katholt carlk friendpine emptyhb
	Paleontological Evidence to Date the Tree of Life [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 26-53. by Michael J. Benton, Philip C. Donoghue posted to 08-smbe by smbe2008 on 2008-06-02 18:06:19 as along with 5 people aprasad Archaeogenetics akifumi maximilianh dandaman
	Parallel evolution of conserved noncoding elements that target a common set of developmental regulatory genes from worms to humans. [My Copy] Genome Biology, Vol. 8 (02 February 2007), R15. by Tanya Vavouri, Klaudia Walter, Walter R. Gilks, Ben Lehner, Greg Elgar posted to 08-smbe by smbe2008 on 2008-06-02 18:04:20 as along with 7 people and 2 groups indigoviolet dpollard adepace djkt sujaikumar Stew cisevol EisenLab cis-regulatory-evolution
	Phylocomposer and phylodirector: analysis and visualization of transducer indel models [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3263-3264. by Ian Holmes posted to 08-smbe by smbe2008 on 2008-06-02 18:00:28 as along with 4 people druvus balicea djkt ryanraaum
	MATLIGN: a motif clustering, comparison and matching tool [My Copy] BMC Bioinformatics, Vol. 8 (08 June 2007), 189. by Matti Kankainen, Ari Loytynoja posted to 08-smbe by smbe2008 on 2008-06-02 17:55:23 as along with 3 people and 1 group idonaldson isimpson xili03 BergmanLab
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to 08-smbe by smbe2008 on 2008-06-02 17:54:16 as along with 12 people and 2 groups operon druvus treangen mdimmic rvosa timflutre stajich zwang cabbagezs groepl yoanjacquemin marti Bioinformatics FAB-lab
	Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over [My Copy] Genome Biology, Vol. 8 (06 February 2007), R18. by Penelope R. Haddrill, Daniel L. Halligan, Dimitris Tomaras, Brian Charlesworth posted to 08-smbe by smbe2008 on 2008-06-02 17:52:43 as along with 3 people and 2 groups dpollard djkt cisevol EisenLab cis-regulatory-evolution
	Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila [My Copy] Proceedings of the National Academy of Sciences (1 April 2008), 0710892105. by Steffen Beisswanger, Wolfgang Stephan posted to 08-smbe by smbe2008 on 2008-06-02 17:52:13 as along with 4 people ilyashl maximilianh oelemento gjuggler
	Live Hot, Die Young: Transmission Distortion in Recombination Hotspots [My Copy] PLoS Genetics, Vol. 3, No. 3. (1 March 2007), e35. by Graham Coop, Simon R. Myers posted to 08-smbe by smbe2008 on 2008-06-02 17:51:31 as along with 1 person and 1 group dpollard EisenLab
	Genetics of gene expression and its effect on disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 423-428. by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, et al.Amy S. Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, G. Bragi Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H. Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P. Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G. Gislason, Tryggvi Stefansson, Bjorn G. Leifsson, Unnur Thorsteinsdottir, John R. Lamb, Jeffrey R. Gulcher, Marc L. Reitman, Augustine Kong, Eric E. Schadt, Kari Stefansson posted to 08-smbe by smbe2008 on 2008-06-02 17:48:37 as along with 21 people and 2 groups icecrown nicholso Zephyrus greg daforerog athma zufar druvus brianb djkt lp2 jo_davies shikin caseybrown ptrobajo vplagnol echinotrix natstreet sanchezbuelna guhjy Borelli 4th_floor_JC GeneGo
	Sequence Variants in the RNF212 Gene Associate with Genome-Wide Recombination Rate [My Copy] Science, Vol. 319, No. 5868. (7 March 2008), pp. 1398-1401. by Augustine Kong, Gudmar Thorleifsson, Hreinn Stefansson, et al.Gisli Masson, Agnar Helgason, Daniel F. Gudbjartsson, Gudrun M. Jonsdottir, Sigurjon A. Gudjonsson, Sverrir Sverrisson, Theodora Thorlacius, Aslaug Jonasdottir, Gudmundur A. Hardarson, Stefan T. Palsson, Michael L. Frigge, Jeffrey R. Gulcher, Unnur Thorsteinsdottir, Kari Stefansson posted to 08-smbe by smbe2008 on 2008-06-02 17:48:17 as along with 3 people and 1 group thegoose2 tharris djkt C. elegans / WormBase
	Large scale genotype-phenotype correlation analysis based on phylogenetic trees. [My Copy] Bioinformatics (31 January 2007) by Farhat Habib, Andrew D D. Johnson, Ralf Bundschuh, Daniel Janies posted to 08-smbe by smbe2008 on 2008-06-02 17:31:41 as along with 4 people djkt shigepong balicea farhat
	Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence [My Copy] Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1913-1927. by Gilly Padalon-Brauch, Ruth Hershberg, Maya Elgrably-Weiss, et al.Kobi Baruch, Ilan Rosenshine, Hanah Margalit, Shoshy Altuvia posted to 08-smbe by smbe2008 on 2008-06-02 17:30:53 as along with 1 person eskay
	Exploring Variation in the d N /d S Ratio Among Sites and Lineages Using Mutational Mappings: Applications to the Influenza Virus [My Copy] Journal of Molecular Evolution, Vol. 65, No. 3. (1 September 2007), pp. 340-348. by Weiwei Zhai, Montgomery Slatkin, Rasmus Nielsen posted to 08-smbe by smbe2008 on 2008-06-02 17:27:29 as along with 2 people operon stevanspringer
	GENETICS: Why Genomes in Pieces? [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 405-407. by Laura F. Landweber posted to 08-smbe by smbe2008 on 2008-06-02 17:24:22 as along with 3 people operon gulsacan sharpton
	Long-term evolution of transposable elements [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19375-19380. by Arnaud Le Rouzic, Thibaud S. Boutin, Pierre Capy posted to 08-smbe by smbe2008 on 2008-06-02 17:23:52 as along with 8 people Anachff gwallau timflutre operon sebastien_vigneau saru hpaces balicea
	Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila [My Copy] Genetics, Vol. 177, No. 4. (1 December 2007), pp. 2083-2099. by Michael J. Macpherson, Guy Sella, Jerel C. Davis, Dmitri A. Petrov posted to 08-smbe by smbe2008 on 2008-06-02 17:22:48 as along with 4 people renewang brant caseybrown PetrovLab
	A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution. [My Copy] Journal of molecular evolution, Vol. 62, No. 2. (February 2006), pp. 168-175. by M. Lipatov, P. F. Arndt, T. Hwa, D. A. Petrov posted to 08-smbe by smbe2008 on 2008-06-02 17:22:02 as along with 1 person PetrovLab
	Transposable elements and the evolution of regulatory networks [My Copy] Nat Rev Genet, Vol. 9, No. 5. (27 May 2008), pp. 397-405. by Cedric Feschotte posted to 08-smbe by smbe2008 on 2008-06-02 17:20:52 as along with 12 people and 1 group robfsouza fhalbrit balicea gwallau djkt bootsy idonaldson cmzmasek eskay roys pradiptaray timflutre BergmanLab
	Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis [My Copy] Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130. by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier posted to 08-smbe by smbe2008 on 2008-06-02 17:15:37 as along with 5 people and 1 group operon aprasad renatomilani stevanspringer rvosa FAB-lab
	Genome-Wide Survey for Biologically Functional Pseudogenes [My Copy] PLoS Comput Biol, Vol. 2, No. 5. (5 May 2006), e46. by O. Svensson, L. Arvestad, J. Lagergren posted to 08-smbe by smbe2008 on 2008-06-02 16:58:13 as along with 3 people and 2 groups bsmagic cjeans renatomilani Bioinformatics bioinplant
	Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms. [My Copy] J Exp Zoolog B Mol Dev Evol (12 July 2006) by Christian Roth, Shruti Rastogi, Lars Arvestad, et al.Katharina Dittmar, Sara Light, Diana Ekman, David A A. Liberles posted to 08-smbe by smbe2008 on 2008-06-02 16:55:20 as along with 9 people jameswasmuth wangbo azazello zhlei operon bjorns treangen signalduplication LouisKa
	The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure [My Copy] Journal of Molecular Evolution, Vol. 66, No. 1. (24 January 2008), pp. 21-35. by Feng-Jie Sun, Gustavo Caetano-Anollés posted to 08-smbe by smbe2008 on 2008-06-02 16:54:16 as along with 1 person msierk
	Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome [My Copy] Nature Genetics, Vol. 39, No. 1. (10 December 2006), pp. 126-130. by Jianbing Mu, Philip Awadalla, Junhui Duan, et al.Kate M. Mcgee, Jon Keebler, Karl Seydel, Gilean A. T. Mcvean, Xin-Zhuan Su posted to 08-smbe by smbe2008 on 2008-06-02 16:53:30 as along with 6 people ilyashl fernan becarmson shigepong GeeSharpMinor xingxu
	Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA [My Copy] Molecular and Biochemical Parasitology, Vol. 155, No. 2. (October 2007), pp. 103-112. by Joseph Bockhorst, Fangli Lu, Joel H. Janes, et al.Jon Keebler, Benoit Gamain, Philip Awadalla, Xin-Zhuan Su, Ram Samudrala, Nebojsa Jojic, Joseph D. Smith posted to 08-smbe by smbe2008 on 2008-06-02 16:53:03 as
	Whole mtDNA Genome Sequence Analysis of Ancient African Lineages. [My Copy] Mol Biol Evol (28 December 2006) by Mary Katherine K. Gonder, Holly M M. Mortensen, Floyd A A. Reed, Alexandra de Sousa, Sarah A A. Tishkoff posted to 08-smbe by smbe2008 on 2008-06-02 16:52:02 as along with 2 people and 2 groups Archaeogenetics dchughes G4ID Genetics-of-Gambling
	Do mosquitoes filter the access of Plasmodium cytochrome b lineages to an avian host? [My Copy] Molecular Ecology, Vol. 17, No. 10. (May 2008), pp. 2552-2561. by Andrea B. Gager, Rosario D. E. L. Loaiza, E. Jos, Donald C. Dearborn, Eldredge Bermingham posted to 08-smbe by smbe2008 on 2008-06-02 16:50:11 as
	Inferring Selection in Partially Sequenced Regions [My Copy] Mol Biol Evol (28 December 2007), msm273. by Jeffrey D. Jensen, Kevin R. Thornton, Charles F. Aquadro posted to 08-smbe by smbe2008 on 2008-06-02 16:48:37 as along with 2 people and 1 group djkt dmc Durbin group
	Synonymous Codon Usage in Escherichia coli: Selection for Translational Accuracy [My Copy] Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 374-381. by Stoletzki, Nina, Eyre-Walker, Adam posted to 08-smbe by smbe2008 on 2008-06-02 16:47:22 as along with 5 people robfsouza operon michaelbarton gjuggler bpcusack
	Insertion/Deletion and Nucleotide Polymorphism Data Reveal Constraints in Drosophila melanogaster Introns and Intergenic Regions [My Copy] Genetics, Vol. 169, No. 3. (1 March 2005), pp. 1521-1527. by Lino Ometto, Wolfgang Stephan, David De Lorenzo posted to 08-smbe by smbe2008 on 2008-06-02 16:45:22 as along with 2 people and 1 group penka cisevol Nie
	Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization [My Copy] BMC Evolutionary Biology, Vol. 8 (08 February 2008), 43. by Frederic J. J. Chain, Dora Ilieva, Ben J. Evans posted to 08-smbe by smbe2008 on 2008-06-02 16:43:36 as
	Five Drosophila Genomes Reveal Nonneutral Evolution and the Signature of Host Specialization in the Chemoreceptor Superfamily [My Copy] Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1395-1416. by Carolyn S. Mcbride, Roman J. Arguello, Brian C. O'Meara posted to 08-smbe by smbe2008 on 2008-06-02 16:42:51 as along with 1 person operon
	Positional Conservation of Clusters of Overlapping Promoter-Like Sequences in Enterobacterial Genomes [My Copy] Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 997-1010. by Araceli M. Huerta, Julio Collado-Vides, Pilar M. Francino posted to 08-smbe by smbe2008 on 2008-06-02 16:40:44 as along with 1 person discreteonyxorb
	Discrimination and scoring using small sets of genes for two-sample microarray data [My Copy] Mathematical Biosciences, Vol. 205, No. 2. (February 2007), pp. 195-203. by Gilles Guillot, Maja Olsson, Mikael Benson, Mats Rudemo posted to 08-smbe by smbe2008 on 2008-06-02 16:22:00 as along with 2 people ptrobajo karfunkel
	Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana. [My Copy] Genome Biol, Vol. 5, No. 7. (2004) by G. Marais, B. Charlesworth, S. I. Wright posted to 08-smbe by smbe2008 on 2008-06-02 16:20:27 as along with 2 people maren timflutre
	Selection against spurious promoter motifs correlates with translational efficiency across bacteria. [My Copy] PLoS ONE, Vol. 2, No. 1. (2007) by J. L. Froula, M. P. Francino posted to 08-smbe by smbe2008 on 2008-06-02 16:19:20 as
	Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse [My Copy] Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 42-49. by Christian Voolstra, Diethard Tautz, Patrick Farbrother, Ludwig Eichinger, Bettina Harr posted to 08-smbe by gjuggler on 2008-05-22 17:20:54 as
	Regulatory changes underlying expression differences within and between Drosophila species. [My Copy] Nat Genet (17 February 2008) by Patricia J. J. Wittkopp, Belinda K. K. Haerum, Andrew G. G. Clark posted to 08-smbe by gjuggler on 2008-05-22 17:19:55 as along with 4 people athma brant djkt mimulus_99
	Evaluating the role of natural selection in the evolution of gene regulation [My Copy] Heredity, Vol. aop, No. current. by J. C. Fay, P. J. Wittkopp posted to 08-smbe by gjuggler on 2008-05-22 17:19:37 as along with 5 people and 2 groups jbsaltz dpollard djkt cisevol emptyhb EisenLab cis-regulatory-evolution
	Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. [My Copy] Genome Biology, Vol. 8 (22 February 2007), R23. by Alan M. Moses, Jean K. Heriche, Richard Durbin posted to 08-smbe by gjuggler on 2008-05-22 17:18:02 as along with 2 people and 1 group hryk dpollard EisenLab
	Differentiated evolutionary rates in alternative exons and the implications for splicing regulation [My Copy] BMC Evolutionary Biology, Vol. 6 (22 June 2006), 50. by Mireya Plass, Eduardo Eyras posted to 08-smbe by gjuggler on 2008-05-22 17:13:15 as
	Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis [My Copy] Mol Biol Evol, Vol. 25, No. 2. (1 February 2008), pp. 375-382. by Manuel Irimia, Jakob L. Rukov, David Penny, Jordi G. Fernandez, Jeppe Vinther, Scott W. Roy posted to 08-smbe by gjuggler on 2008-05-22 17:12:13 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Spliceosomal introns as tools for genomic and evolutionary analysis [My Copy] Nucl. Acids Res., Vol. 36, No. 5. (1 March 2008), pp. 1703-1712. by Manuel Irimia, Scott W. Roy posted to 08-smbe by gjuggler on 2008-05-22 17:10:14 as
	Intron mis-splicing: no alternative? [My Copy] Genome Biology, Vol. 9 (19 February 2008), 208. by Scott W. Roy, Manuel Irimia posted to 08-smbe by gjuggler on 2008-05-22 17:09:44 as
	Refined analysis of genetic variability parameters in hepatitis C virus and the ability to predict antiviral treatment response [My Copy] Journal of Viral Hepatitis, Vol. 0, No. 0. (0), pp. ???-???. by J. M. Cuevas, Torres M. Puente, Jimenez N. Hernandez, et al.M. A. Bracho, Garcia I. Robles, F. Carnicer, J. D. Olmo, E. Ortega, A. Moya, Gonzalez F. Candelas posted to 08-smbe by gjuggler on 2008-05-22 17:07:35 as
	Spontaneous Mutation Accumulation Studies in Evolutionary Genetics [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 40, No. 1. (2009) by Peter D. Keightley posted to nopdf 08-smbe by gjuggler on 2008-05-22 17:05:57 as along with 1 person scmelton
	The origins of multicellularity and the early history of the genetic toolkit for animal development. [My Copy] Annual review of genetics, Vol. 42, No. 1. (2008), pp. 235-251. by Antonis Rokas posted to 08-smbe by gjuggler on 2008-05-22 17:04:56 as along with 1 person biomcgary
	GENOMICS: Lining Up to Avoid Bias [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417. by Antonis Rokas posted to 08-smbe by gjuggler on 2008-05-22 17:04:19 as along with 8 people treangen operon dayjm cjeans lilou dandaman renatomilani bpcusack

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