Tag 454 [181 articles] Export

Recent papers classified by the tag 454.

	Flow cytometry for enrichment and titration in massively parallel DNA sequencing. [My Copy] Nucleic acids research (20 March 2009) by Julia Sandberg, Patrik L L. Ståhl, Afshin Ahmadian, Magnus K K. Bjursell, Joakim Lundeberg posted to titration facs empcr 454 by mfgreen on 2009-11-03 20:47:40 as
	Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (12 June 2009), 264. by Shrinivasrao Mane, Clive Evans, Kristal Cooper, et al.Oswald Crasta, Otto Folkerts, Stephen Hutchison, Timothy Harkins, Danielle T. Mieg, Jean T. Mieg, Roderick Jensen posted to microrarray high-throughput-sequencing benchmark 454 by heliopais on 2009-11-03 16:41:23 as along with 5 people daforerog GeeSharpMinor guhjy natstreet fenghezi
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp-discovery snp sequencing pipeline ingap coverage 454 by n00c on 2009-11-02 21:10:08 as along with 4 people jasontsai natstreet heliopais druvus
	Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 404. by Nicole Quinn, Natasha Levenkova, William Chow, et al.Pascal Bouffard, Keith Boroevich, James Knight, Thomas Jarvie, Krzysztof Lubieniecki, Brian Desany, Ben Koop, Timothy Harkins, William Davidson posted to sequencing salmon fish 454 by seb1 on 2009-10-26 12:55:38 as along with 4 people natstreet druvus orzenil neils
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (15 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. Mcdade, Michael P. Mckenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to sequencing 454 by seb1 on 2009-10-23 18:14:22 as along with 36 people and 5 groups pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to variation solid solexa roche review mosaik illumina false-positive comparison abi 454 by n00c on 2009-10-19 16:04:09 as along with 4 people and 1 group jwfoley skembel djkt natstreet iSEEM
	Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 219. by Eli Meyer, Galina Aglyamova, Shi Wang, et al.Jade B. Carter, David Abrego, John Colbourne, Bette Willis, Mikhail Matz posted to transcriptome ngs 454 by orzenil on 2009-10-17 03:39:44 as along with 5 people and 1 group mlog jonilaserson stajich Thaverkamp idoerg Mycology
	Windshield splatter analysis with the Galaxy metagenomic pipeline [My Copy] Genome Research, Vol. 19, No. 11. (9 November 2009), pp. 2144-2153. by Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, et al.Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko posted to next-gen_sequencing metagenomics 454 by jgill on 2009-10-14 21:15:28 as along with 6 people and 2 groups Katje djkt operon neils idonaldson kshameer microbiology_nijmegen iSEEM
	Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium [My Copy] Genome Biology, Vol. 10, No. 9. (25 September 2009), R102. by Richard Stabler, Miao He, Lisa Dawson, et al.Melissa Martin, Esmeralda Valiente, Craig Corton, Trevor Lawley, Mohammed Sebaihia, Michael Quail, Graham Rose, Dale Gerding, Maryse Gibert, Michel Popoff, Julian Parkhill, Gordon Dougan, Brendan Wren posted to variation sequencing sanger illumina evolution assembly 454 by sandfire on 2009-10-13 20:44:54 as along with 3 people jlmoir jecouk druvus
	Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction [My Copy] Research in Computational Molecular Biology (2009), pp. 271-284. by Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth, Niko Beerenwinkel posted to variants sequencing mcmc hiv dirichlet bayes 454 by jonilaserson on 2009-10-08 20:37:53 as along with 1 person dakelley
	Generalized antifungal activity and 454-screening of Pseudonocardia and Amycolatopsis bacteria in nests of fungus-growing ants [My Copy] Proceedings of the National Academy of Sciences (22 September 2009) by Ruchira Sen, Heather D. Ishak, Dora Estrada, Scot E. Dowd, Eunki Hong, Ulrich G. Mueller posted to mutualisms fungi bacteria ants 454 by skembel on 2009-10-06 20:31:32 as
	Mining SNPs from DNA Sequence Data; Computational Approaches to SNP Discovery and Analysis. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 578 (2009), pp. 73-91. by Jan van Oeveren, Antoine Janssen posted to software snps review illumina 454 by sandfire on 2009-10-01 17:48:22 as along with 1 person n00c
	Pyrosequencing for SNP Genotyping [My Copy] Single Nucleotide Polymorphisms (2003), pp. 189-195. by Mostafa Ronaghi posted to snps methods genotyping 454 by sandfire on 2009-10-01 17:46:14 as
	Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (May 2009), pp. 347-354. by Peter C. Bundock, Frances G. Eliott, Gary Ablett, et al.Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, Robert J. Henry posted to snp-discovery snp sequencing polybayes plant genome 454 by n00c on 2009-10-01 16:17:51 as along with 2 people orzenil natstreet
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to transcriptome technology solid solexa rna-seq illumina comparison abi 454 by n00c on 2009-09-29 16:17:26 as along with 18 people and 4 groups daveGerrard daforerog feeldead debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Application of 'next-generation' sequencing technologies to microbial genetics. [My Copy] Nature reviews. Microbiology, Vol. 7, No. 4. (April 2009), pp. 287-296. by D. MacLean, J. D. Jones, D. J. Studholme posted to sequencing review illumina high_throughput 454 by sandfire on 2009-09-29 11:50:01 as along with 2 people shabhonam burak
	Evaluation of next generation sequencing platforms for population targeted sequencing studies [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted to solid solexa next-gen_sequencing 454 by jgill on 2009-09-28 18:48:40 as along with 22 people and 2 groups dbensasson GustavoLacerda adijr agbiotec darian jandot n00c jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to pyrosequencing paired-ends assembly 454 by n00c on 2009-09-28 15:22:07 as along with 17 people and 2 groups GustavoLacerda APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to software bioinformatics 454 by operon on 2009-09-27 15:46:54 as along with 33 people hpaces heliopais imaginatio daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Next-Generation DNA Sequencing Methods [My Copy] Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to solid solexa sequencing illumina abi 454 by n00c on 2009-09-25 17:02:13 as along with 14 people heliopais daforerog stsaft natstreet druvus Vincent_Rouilly Annab floatingpoint yupu LorraineThompson giovenko aheilbut reyez guhjy
	Systematic artifacts in metagenomes from complex microbial communities [My Copy] The ISME Journal, Vol. 3, No. 11. (09 July 2009), pp. 1314-1317. by Vicente Gomez-Alvarez, Tracy K. Teal, Thomas M. Schmidt posted to metagenomics data_qc artifacts 454 by jgill on 2009-09-25 15:18:01 as along with 1 person Katje
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to next-gen_sequencing metagenomics 454 16s by jgill on 2009-09-23 15:28:26 as along with 7 people and 2 groups halinat kinestetika jonilaserson skembel druvus orzenil danmaclean iSEEM Bioinformatics
	Whole Genome Amplification and De novo Assembly of Single Bacterial Cells [My Copy] PLoS ONE, Vol. 4, No. 9. (2 September 2009), e6864. by Sébastien Rodrigue, Rex R. Malmstrom, Aaron M. Berlin, Bruce W. Birren, Matthew R. Henn, Sallie W. Chisholm posted to whole_genome_amplification prochlorococcus picoplankton metagenomics genomes genetic_diversity 454 by vaulot to the group Papers recommended by the Roscoff Plankton Group on 2009-09-22 17:27:54 as along with 2 people and 1 group kinestetika chrisvanlang Microbial-Ecology
	Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to sequencing_error next-gen_sequencing 454 16s by jgill on 2009-09-22 17:03:20 as along with 2 people and 1 group jmeppley skembel iSEEM
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to sequencing next-gen mapping_algorithms illumina dna bioinformatics algorithms 454 by behindtherabbit on 2009-09-22 16:33:54 as along with 16 people and 4 groups nuin fenghezi jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Origin of Saxitoxin Biosynthetic Genes in Cyanobacteria [My Copy] PLoS ONE, Vol. 4, No. 6. (1 June 2009), e5758. by Ahmed Moustafa, Jeannette E. Loram, Jeremiah D. Hackett, Donald M. Anderson, F. Gerald Plumley, Debashish Bhattacharya posted to seqman newbler genome 454 by n00c on 2009-09-21 23:14:59 as along with 1 person ahmedmoustafa
	Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing [My Copy] Molecular Ecology, Vol. 17, No. 7. (April 2008), pp. 1636-1647. by J. Cristobal Vera, Christopher W. Wheat, Howard W. Fescemyer, et al.Mikko J. Frilander, Douglas L. Crawford, I. Ilkka Hansk, James H. Marden posted to seqman pyrosequencing 454 by n00c on 2009-09-21 23:13:01 as along with 5 people sujaikumar oneilsh semrich orzenil guhjy
	Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 6. (10 February 2009), pp. 1886-1891. by Qi Zhao, Otavia L. Caballero, Samuel Levy, et al.Brian J. Stevenson, Christian Iseli, Sandro J. de Souza, Pedro A. Galante, Dana Busam, Margaret A. Leversha, Kalyani Chadalavada, Yu-Hui Rogers, J. Craig Venter, Andrew J. G. Simpson, Robert L. Strausberg posted to transcriptome newbler genomics genome clc cancer 454 by n00c on 2009-09-21 21:17:12 as along with 2 people stubrown xingxu
	SNP discovery via 454 transcriptome sequencing. [My Copy] The Plant journal : for cell and molecular biology, Vol. 51, No. 5. (September 2007), pp. 910-918. by W. Brad Barbazuk, Scott J. Emrich, Hsin D. Chen, Li Li, Patrick S. Schnable posted to software snp rnaseq nextgen mutations bioinformatics 454 by stubrown on 2009-09-21 20:51:18 as along with 5 people n00c jlin orzenil guhjy natstreet
	Parallel tagged sequencing on the 454 platform [My Copy] Nature Protocols, Vol. 3, No. 2. (31 January 2008), pp. 267-278. by Matthias Meyer, Udo Stenzel, Michael Hofreiter posted to high-throughput-sequencing barcodes barcode_design 454 by heliopais on 2009-09-18 13:34:42 as along with 6 people n00c jandot GeeSharpMinor maren slevy03 guhjy
	EagleView: a genome assembly viewer for next-generation sequencing technologies. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1538-1543. by Weichun Huang, Gabor Marth posted to visualisation software bioinformatics assembly 454 2008 by hpaces on 2009-09-18 12:56:47 as along with 15 people Thaverkamp imaginatio darian n00c xingxu natstreet abizar druvus balicea bcondon fpattyn APRegier Neeperando GustavoLacerda guhjy
	A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. [My Copy] Nucleic Acids Research, Vol. 35, No. 19. (17 October 2007) by Poornima Parameswaran, Roxana Jalili, Li Tao, et al.Shadi Shokralla, Baback Gharizadeh, Mostafa Ronaghi, Andrew Z. Fire posted to high-throughput-sequencing barcodes barcode_design 454 by heliopais on 2009-09-18 12:00:33 as along with 7 people and 1 group stubrown jlgreen mikheyev jbhiatt pdexheimer alexisfjdufresne slevy03 iSEEM
	Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex [My Copy] Nature Methods, Vol. 5, No. 3. (10 February 2008), pp. 235-237. by Micah Hamady, Jeffrey J. Walker, J. Kirk Harris, Nicholas J. Gold, Rob Knight posted to nextgen barcode 454 by stubrown on 2009-09-17 21:31:16 as along with 10 people and 1 group natstreet druvus sandfire jlgreen jbhiatt skembel pdexheimer guhjy slevy03 sconlan iSEEM
	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to solexa sequencing illumina denovo assembler 454 by sujaikumar on 2009-09-14 10:07:52 as along with 9 people and 2 groups GustavoLacerda sotacam gillianturgeon natstreet druvus jamselem kiekyon ppgardne stajich Journal picks Mycology
	Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes [My Copy] Nucl. Acids Res., Vol. 34, No. 12. (13 July 2006), e84. by Patrick Ng, Jack J. S. Tan, Hong S. Ooi, et al.Yen L. Lee, Kuo P. Chiu, Melissa J. Fullwood, Kandhadayar G. Srinivasan, Clotilde Perbost, Lei Du, Wing-Kin Sung, Chia-Lin Wei, Yijun Ruan posted to next-generation-sequencing 454 by darian on 2009-09-08 17:09:19 as along with 4 people torfinnnome floatingpoint guhjy bozdagd
	Whole genome assembly from 454 sequencing output via modified DNA graph concept [My Copy] Computational Biology and Chemistry, Vol. 33, No. 3. (04 June 2009), pp. 224-230. by Jacek Blazewicz, Marcin Bryja, Marek Figlerowicz, et al.Piotr Gawron, Marta Kasprzak, Edward Kirton, Darren Platt, Jakub Przybytek, Aleksandra Swiercz, Lukasz Szajkowski posted to sequencing graph de-novo assembly algorithm 454 by n00c on 2009-09-04 13:12:14 as along with 5 people and 1 group GustavoLacerda stajich orzenil natstreet druvus Mycology
	Rapid whole-genome mutational profiling using next-generation sequencing technologies [My Copy] Genome Research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to resequencing mrfast map illumina copy-number cnv 454 by n00c on 2009-09-02 16:25:14 as along with 28 people and 1 group leemachado daed gbenson bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	High-Throughput Sequencing of the Zebrafish Antibody Repertoire [My Copy] Science, Vol. 324, No. 5928. (8 May 2009), pp. 807-810. by Joshua A. Weinstein, Ning Jiang, Richard A. White, Daniel S. Fisher, Stephen R. Quake posted to zebrafish variants sequencing rna population metagenomics clustering anitbody 454 by jonilaserson on 2009-09-02 08:27:13 as along with 7 people guhjy gbloeb absterga reyez jbhiatt katiehumphry pineapple
	MetaSim—A Sequencing Simulator for Genomics and Metagenomics [My Copy] PLoS ONE, Vol. 3, No. 10. (8 October 2008), e3373. by Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson posted to simulation sequencing metagenomics 454 by jonilaserson on 2009-08-26 03:09:21 as along with 10 people and 2 groups polivares michaelbarton idoerg sriesenfeld skembel guhjy azazello hpaces druvus nuin BergmanLab iSEEM
	Coastal <i>Synechococcus</i> metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity [My Copy] Environmental Microbiology, Vol. 11, No. 2. (2009), pp. 349-359. by B. Palenik, Q. Ren, V. Tai, I. T. Paulsen posted to sequencing metagenomics denovo 454 by jonilaserson on 2009-08-26 02:37:46 as
	Rare Variants of IFIH1, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 387-389. by Sergey Nejentsev, Neil Walker, David Riches, Michael Egholm, John A. Todd posted to resequencing pool multiplexing gwas 454 by n00c on 2009-08-24 21:51:37 as along with 8 people and 2 groups liqbbi vplagnol jandot APRegier myzhang pkonings absterga jbhiatt Journal picks Marcotte_Lab
	PanGEA: Identification of allele specific gene expression using the 454 technology [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 143. by Robert Kofler, Tatiana T. Torres, Tamas Lelley, Christian Schlotterer posted to snp 454 by GustavoLacerda on 2009-08-21 14:13:58 as along with 5 people and 1 group orzenil natstreet dswan rschulz AlexBateman Bioinformatics
	A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 30. (25 July 2006), pp. 11240-11245. by Susanne M. D. Goldberg, Justin Johnson, Dana Busam, et al.Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A. Kravitz, Federico M. Lauro, Kelvin Li, Yu-Hui Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J. Craig Venter posted to 454 assembly pf454-paper short-read by APRegier on 2009-08-07 21:32:53 as along with 8 people and 5 groups justinhjohnson bjorns balicea dchughes azazello beatrizfernandez GustavoLacerda xingxu DeNovoAssembly-SIMR G4ID Microbial-Ecology Genetics-of-Gambling MBLAB
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to 454 assembly pf454-paper by APRegier on 2009-08-07 19:53:07 as along with 17 people n00c pachorip thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing [My Copy] PLoS ONE, Vol. 2, No. 2. (14 February 2007), e197. by Jonas Binladen, Gilbert, Jonathan P. Bollback, et al.Frank Panitz, Christian Bendixen, Rasmus Nielsen, Eske Willerslev posted to 454 multiplex nextgen sequencing by jandot on 2009-08-07 16:08:32 as along with 2 people and 1 group jlgreen guhjy iSEEM
	A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1609-1616. by Zia Khan, Joshua S. Bloom, Leonid Kruglyak, Mona Singh posted to 454 algorithm alignment suffix-array by n00c on 2009-08-05 17:08:46 as along with 2 people guhjy djkt
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted to 454 chimera metagenomics sanger sequencing by jonilaserson on 2009-08-04 19:36:44 as along with 10 people and 3 groups inquil dakelley hwright jlgreen chocolate2009 jmeppley vaulot Thaverkamp neils skoch3 iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to ngs 454 genomics by GustavoLacerda on 2009-08-04 17:47:11 as along with 36 people and 3 groups hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	The Genome Sequencer FLX™ System—Longer reads, more applications, straight forward bioinformatics and more complete data sets [My Copy] Journal of Biotechnology, Vol. 136, No. 1-2. (31 August 2008), pp. 3-10. by M. Droege, B. Hill posted to pyrosequencing nimblegen genome-sequencer-flx 454 by n00c on 2009-07-30 19:43:19 as along with 6 people thegoose katholt daed druvus floatingpoint GustavoLacerda

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sequencing	101
assembly	55
metagenomics	42
solexa	32
genome	30
illumina	25
bioinformatics	23
ht_sequencing	22
bacteria	21
snp	19
mirna	17
nextgen	17
2008	16
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genomics	13
pyrosequencing	13
review	13
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est	12
ngs	12
solid	12
transcriptome	11
2007	10
methods	10
analysis	9
arabidopsis	9
diversity	9
malaria	9
resequencing	9
wing2008	9
16s	8
algorithm	8
next-gen	8
printed	8
rna-seq	8
unread	8
expression	7
human	7
nextgensequencing	7
sanger	7
transposon	7
chip-seq	6
mapping	6
plant	6
sequencer	6
snp-discovery	6
application	5
dna	5
gene	5
microarray	5
next-gen_sequencing	5
variants	5
2009	4
abi	4
ancient_dna	4
chimera	4
database	4
evolution	4
method	4
mpss	4
nonconserved	4
tasi	4
taxonomy	4
transcriptomics	4
virus	4
wga	4
454_sequencing	3
alignment	3
allele	3
barcode	3
celera	3
cnv	3
comment	3
community_genomics	3
comparison	3
denovo	3
discovery	3
genetic_diversity	3
genome_organisation	3
genomes	3
hellman	3
high-throughput-sequencing	3
hiv	3
mosaik	3
next	3
pf454-paper	3
picoplankton	3
prochlorococcus	3
short-read	3
snp-calling	3
variation	3
whole_genome_amplification	3
copy-number	2
gen	2
identifying	2
informatics	2
prok-seq-cg-pipeline	2
rna_seq	2
self	2
smallrna	2

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