Tag affy [150 articles] Export

Recent papers classified by the tag affy.

	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to snp cnv affy by shikin on 2009-11-13 17:42:47 as along with 20 people and 1 group vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted to snp method cnv affy by shikin on 2009-11-12 18:02:50 as along with 14 people sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 259-277. by William B. Langdon, Graham J. G. Upton, Andrew P. Harrison posted to low_level affy by jfr on 2009-11-04 11:09:53 as along with 2 people bertelsen zufar
	Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711. by Rebeqa Gunnarsson, Johan Staaf, Mattias Jansson, et al.Anne Marie M. Ottesen, Hanna Göransson, Ulrika Liljedahl, Ulrik Ralfkiaer, Mahmoud Mansouri, Anne Mette M. Buhl, Karin Ekström E. Smedby, Henrik Hjalgrim, Ann-Christine C. Syvänen, Ake Borg, Anders Isaksson, Jesper Jurlander, Gunnar Juliusson, Richard Rosenquist posted to snp illumina cnv affy by shikin on 2009-10-29 18:51:56 as along with 1 person jfr
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to snp r cnv affy by shikin on 2009-10-27 17:36:28 as along with 5 people djkt pkonings rdiaz daforerog neils
	A genotype calling algorithm for affymetrix SNP arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 1. (1 January 2006), pp. 7-12. by Nusrat Rabbee, Terence P. Speed posted to statistics snp affy by shikin on 2009-10-26 16:13:35 as along with 6 people daforerog pcahan1 jfr beniltoncarvalho ashandanj djkt
	The effects of probe binding affinity differences on gene expression measurements and how to deal with them [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2772-2779. by Michael Dannemann, Anna Lorenc, Ines Hellmann, Philipp Khaitovich, Michael Lachmann posted to cross-species affy by natstreet on 2009-10-26 08:12:01 as
	Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression. [My Copy] Journal of biomolecular techniques : JBT, Vol. 19, No. 2. (April 2008), pp. 122-128. by Meijuan Li, Cavan Reilly posted to qc microarray affy by shikin on 2009-09-28 15:51:15 as along with 1 person jfr
	Unsupervised assessment of microarray data quality using a Gaussian mixture model. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 191. by Brian E. Howard, Beate Sick, Steffen Heber posted to qc bayesian affy by shikin on 2009-09-28 14:46:35 as along with 3 people rdiaz lwaldron renatomilani
	Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (22 April 2007), pp. 485-499. by Benilton Carvalho, Henrik Bengtsson, Terence P. Speed, Rafael A. Irizarry posted to snp illumina affy by shikin on 2009-09-28 13:25:51 as along with 4 people daforerog GeeSharpMinor guhjy jfr
	Sources of variation in Affymetrix microarray experiments. [My Copy] BMC bioinformatics, Vol. 6 (2005) by Stanislav O. Zakharkin, Kyoungmi Kim, Tapan Mehta, et al.Lang Chen, Stephen Barnes, Katherine E. Scheirer, Rudolph S. Parrish, David B. Allison, Grier P. Page posted to genechip affy by zufar on 2009-09-17 11:54:43 as along with 2 people bertelsen ghattem
	Generating linkage mapping files from Affymetrix SNP chip data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1961-1962. by M. Bahlo, C. J. Bromhead posted to affy linkage ma snp by guhjy on 2009-07-21 05:19:13 as along with 1 person daforerog
	Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. [My Copy] Genome biology, Vol. 9, No. 4. (3 April 2008), R63. by Shin Lin, Benilton Carvalho, David J. Cutler, Dan E. Arking, Aravinda Chakravarti, Rafael A. Irizarry posted to affy ms_tnaffy snp by maren on 2009-07-21 00:26:32 as along with 5 people shikin rdiaz daforerog natstreet jfr
	GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1978-1979. by Lasse Folkersen, Diego Diez, Craig E. Wheelock, et al.Jesper Z. Haeggström, Susumu Goto, Per Eriksson, Anders Gabrielsen posted to affy gene_expression microarray by shikin on 2009-07-20 10:24:14 as along with 2 people and 1 group dswan guhjy Bioinformatics
	easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data. [My Copy] BMC bioinformatics, Vol. 9 (14 October 2008), 432. by T. Y. Chang, Y. Y. Li, C. H. Jen, et al.T. P. Yang, C. H. Lin, M. T. Hsu, H. W. Wang posted to affy exon ma by guhjy on 2009-07-18 10:18:33 as along with 2 people jfr dswan
	Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays. [My Copy] Acta biochimica Polonica, Vol. 56, No. 2. (2009), pp. 271-277. by R. Jaksik, J. Polańska, R. Herok, J. Rzeszowska-Wolny posted to affy ma by guhjy on 2009-07-18 02:28:27 as
	Inverse Langmuir method for oligonucleotide microarray analysis. [My Copy] BMC bioinformatics, Vol. 10 (20 February 2009), 64. by G. C. Mulders, G. T. Barkema, E. Carlon posted to affy low_level by jfr to the group Bioinformatics on 2009-07-09 13:03:12 as
	Affy exon tissues: exon levels in normal tissues in human, mouse and rat [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2442-2443. by Andrew A. Pohl, Charles W. Sugnet, Tyson A. Clark, Kayla Smith, Pauline A. Fujita, Melissa S. Cline posted to affy exon ma mouse rat tissue by guhjy on 2009-07-08 04:03:37 as along with 1 person dswan
	Nonspecific Hybridization Scaling of Microarray Expression Estimates: A Physicochemical Approach for Chip-to-Chip Normalization [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 9. (5 March 2009), pp. 2874-2895. by Hans Binder, Jan Brücker, Burden posted to affy by zufar on 2009-07-03 17:12:50 as along with 2 people mkbehnke bertelsen
	"Hook"-calibration of GeneChip-microarrays: Theory and algorithm [My Copy] Algorithms for Molecular Biology, Vol. 3, No. 1. (2008) by Hans Binder, Stephan Preibisch posted to affy by zufar on 2009-07-03 16:51:54 as along with 3 people bertelsen talponer jfr
	Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array [My Copy] Genome Research, Vol. 14, No. 3. (March 2004), pp. 414-425. by Hajime Matsuzaki, Halina Loi, Shoulian Dong, et al.Ya-Yu Tsai, Joy Fang, Jane Law, Xiaojun Di, Wei-Min Liu, Geoffrey Yang, Guoying Liu, Jing Huang, Giulia C. Kennedy, Thomas B. Ryder, Gregory A. Marcus, Sean P. Walsh, Mark D. Shriver, Jennifer M. Puck, Keith W. Jones, Rui Mei posted to affy genotyping by ajbattle on 2009-06-12 22:52:36 as
	A Model-Based Background Adjustment for Oligonucleotide Expression Arrays [My Copy] Journal of the American Statistical Association, Vol. 99, No. 468., 909. by Zhijin Wu, Rafael A. Irizarry, Robert Gentleman, Francisco Martinez-Murillo, Forrest Spencer posted to affy microarray statistics by shikin to the group GeneGo on 2009-05-29 13:13:56 as along with 9 people jperkins schwalb karinlag GeeSharpMinor RMGraze thomlo nicholso jo_davies bertelsen
	Improved precision and accuracy for microarrays using updated probe set definitions [My Copy] BMC Bioinformatics, Vol. 8 (08 February 2007), 48. by Rickard Sandberg, Ola Larsson posted to affy annotation microarray by shikin on 2009-05-22 17:18:46 as along with 7 people lwaldron jfr gpalidwor shigepong ghattem heliopais bertelsen
	A new summarization method for affymetrix probe level data [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949. by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer posted to affy method normalization statistics by shikin on 2009-05-06 19:29:29 as along with 3 people bertelsen cassj ghattem
	High-throughput, high-accuracy array-based resequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6712-6717. by Jianbiao Zheng, Martin Moorhead, Li Weng, et al.Farooq Siddiqui, Victoria E. H. Carlton, James S. Ireland, Liana Lee, Joseph Peterson, Jennifer Wilkins, Sean Lin, Zhengyan Kan, Somasekar Seshagiri, Ronald W. Davis, Malek Faham posted to affy seq snp by guhjy on 2009-04-29 08:25:14 as along with 4 people rdiaz djkt reyez jdbowes
	G-spots cause incorrect expression measurement in Affymetrix microarrays [My Copy] BMC Genomics, Vol. 9 (18 December 2008), 613. by Graham, Andrew P. Harrison posted to affy by zufar on 2009-04-02 16:28:21 as along with 1 person rdiaz
	Quality assessment of Affymetrix GeneChip data. [My Copy] OMICS, Vol. 10, No. 3. (2006), pp. 358-368. by S. Heber, B. Sick posted to affy by zufar on 2009-04-02 11:55:50 as along with 5 people lwaldron jfr maldi yevishere bertelsen
	Quality Assessment of Affymetrix GeneChip Data [My Copy] Bioinformatics and Computational Biology Solutions Using R and Bioconductor (2005), pp. 33-47. by B. Bolstad, F. Collin, J. Brettschneider, et al.K. Simpson, L. Cope, R. Irizarry, T. P. Speed posted to affy by zufar on 2009-04-02 11:55:25 as along with 1 person lwaldron
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to affy microarray normalization statistics by shikin on 2009-03-31 16:40:12 as along with 22 people jperkins vplagnol brianb neils ipark-kaist michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Summaries of Affymetrix GeneChip probe level data [My Copy] Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted to affy gene_expression microarray normalization statistics by shikin on 2009-03-31 16:39:31 as along with 17 people jperkins daforerog lwaldron dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz bertelsen srp33
	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted to affy normalization statistics by shikin on 2009-03-31 16:38:56 as along with 27 people and 4 groups jperkins VGreiff lwaldron jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj vertikalist MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
	Meta-analysis of gene expression profiles related to relapse-free survival in 1,079 breast cancer patients [My Copy] Breast Cancer Research and Treatment by Balazs Györffy, Reinhold Schäfer posted to affy breast_cancer meta-analysis survival_analysis by jfr on 2009-03-16 16:45:04 as along with 1 person daforerog
	Determining gene expression on a single pair of microarrays [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Robert Reid, Anthony Fodor posted to affy by jfr on 2009-03-16 10:25:21 as along with 6 people dswan guhjy lptolik rschulz barriot nuin
	Use of hidden correlations in short oligonucleotide array data are insufficient for accurate quantification of nucleic acid targets in complex target mixtures. [My Copy] Journal of microbiological methods, Vol. 76, No. 2. (February 2009), pp. 188-195. by R. A. Rule, A. E. Pozhitkov, P. A. Noble posted to affy low_level by jfr on 2009-03-12 11:20:12 as
	Power enhancement via multivariate outlier testing with gene expression arrays. [My Copy] Bioinformatics (Oxford, England) (16 November 2008) by Adam Asare, Zhong Gao, Vincent J J. Carey, Richard Wang, Vicki Seyfert-Margolis posted to affy bioconductor quality_control by jfr on 2009-03-12 11:00:08 as along with 3 people rschulz lptolik guhjy
	Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 36-41. by Chikara Furusawa, Naoaki Ono, Shingo Suzuki, Tomoharu Agata, Hiroshi Shimizu, Tetsuya Yomo posted to affy low_level by jfr on 2009-03-11 11:05:44 as along with 2 people renatomilani guhjy
	AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip(TM) expression arrays with respect to SNPs [My Copy] BMC Bioinformatics, Vol. 8 (30 July 2007), 276. by Sunita Kumari, Lalit K. Verma, Jennifer W. Weller posted to affy ma snp by guhjy on 2009-03-11 10:14:07 as along with 1 person jfr
	SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data. [My Copy] BMC genomics, Vol. 10 (05 March 2009), 98. by Adriane Menssen, Götz Edinger, Joachim R. Grün, et al.Ulrike Haase, Ria Baumgrass, Andreas Grützkau, Andreas Radbruch, Gerd-R R. Burmester, Thomas Häupl posted to affy db ma meta-analysis software by guhjy on 2009-03-11 09:01:18 as along with 2 people daforerog dswan
	affyGG: computational protocols for genetical genomics with Affymetrix arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 3. (1 February 2008), pp. 433-434. by R. Alberts, G. Vera, R. C. Jansen posted to affy eqtl by guhjy on 2009-03-06 04:09:18 as along with 3 people djkt giovanni jfr
	Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3683-3685. by Claire L. Wilson, Crispin J. Miller posted to affy by zufar on 2009-02-27 14:40:29 as along with 4 people and 1 group vertikalist daforerog frohike bertelsen BTS-PT-AS-CS
	Comparison of Affymetrix GeneChip expression measures [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 789-794. by Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee posted to normalization genechip affy by zufar on 2009-02-26 11:13:37 as along with 7 people bertelsen heliopais winterschlaefer RMGraze hggr ghattem groepl
	Combining Affymetrix microarray results. [My Copy] BMC bioinformatics, Vol. 6 (2005) by John R. Stevens, R. W. Doerge posted to affy meta-analysis rank-aggregation by shikin on 2009-02-24 18:58:32 as along with 5 people daforerog lwaldron floatingpoint talponer jfr
	Comprehensive analysis of affymetrix exon arrays using BioConductor. [My Copy] PLoS computational biology, Vol. 4, No. 2. (February 2008) by M. J. Okoniewski, C. J. Miller posted to affy r by guhjy on 2009-02-23 04:33:34 as along with 7 people daveGerrard floatingpoint neils giovenko jfr chrisamiller eskay
	Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes. [My Copy] BMC genomics, Vol. 10 (05 February 2009), 63. by Steven P. Wilder, Pamela J. Kaisaki, Karène Argoud, et al.Anita Salhan, Jiannis Ragoussis, Marie-Thérèse T. Bihoreau, Dominique Gauguier posted to affy cross-platform dm ma mouse rat by guhjy on 2009-02-20 05:01:20 as along with 2 people and 1 group dswan shikin Bioinformatics
	Genomic islands of speciation in Anopheles gambiae. [My Copy] PLoS Biol, Vol. 3, No. 9. (September 2005) by T. L. Turner, M. W. Hahn, S. V. Nuzhdin posted to affy genome by maren on 2009-01-27 21:21:21 as along with 3 people emptyhb RMGraze natstreet
	OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays. [My Copy] BMC genomics, Vol. 9 (31 December 2008), 636. by J. My Yeung, P. C. Sham, A. Sw Chan, S. S. Cherny posted to affy gwa ma software by guhjy on 2009-01-27 08:15:40 as along with 1 person daforerog
	Effect of single nucleotide polymorphisms on Affymetrix(R) match-mismatch probe pairs. [My Copy] Bioinformation, Vol. 2, No. 9. (2008), pp. 405-411. by E. C. Rouchka, A. W. Phatak, A. V. Singh posted to affy low_level snp by jfr on 2009-01-09 11:31:45 as
	Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays [My Copy] BMC Genomics, Vol. 9 (07 November 2008), 529. by Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J. Gaffney, Roderick V. Jensen, Jacek Majewski posted to affy ma splicing by guhjy on 2009-01-01 06:53:50 as along with 6 people bertelsen jfr ivanek pengchy dswan caseybrown
	A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Marta Blangiardo, Sylvia Richardson posted to affy bayes calibration by guhjy on 2008-12-06 03:50:50 as along with 2 people rschulz barriot
	Association mapping with single-feature polymorphisms. [My Copy] Genetics, Vol. 173, No. 2. (June 2006), pp. 1125-1133. by S. Kim, K. Zhao, R. Jiang, et al.J. Molitor, J. O. Borevitz, M. Nordborg, P. Marjoram posted to affy assoc genome by maren on 2008-11-29 19:35:00 as

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low_level	37
ma	17
annotation	15
microarray	15
normalization	12
snp	12
quality_control	10
transcriptomic	10
software	9
illumina	7
microarray_technology	7
statistics	7
bg	6
gene_expression	6
r	6
snp_pool	6
affymetrix	5
analysis	5
exonarray	5
meta-analysis	5
methodology	5
snp-arrays	5
bioconductor	4
bioinformatics	4
cnv	4
evaluation	4
genechip	4
genotyping	4
database	3
exon	3
feature_selection	3
splice	3
bayes	2
control	2
cross-platform	2
data	2
degradation	2
exon_arrays	2
expression	2
ffpe	2
genome	2
gwa	2
method	2
mouse	2
probe-level	2
qc	2
quality	2
rat	2
review	2
rin	2
splicing	2
wga	2
alternative_splicing	1
array	1
arrays	1
assoc	1
association	1
bayesian	1
breast_cancer	1
calibration	1
cells	1
ceph	1
ckd	1
co-expression	1
cross-species	1
dataset	1
db	1
development	1
epithelial	1
eqtl	1
factor	1
fdr	1
genoty	1
hnrnp	1
image_analysis	1
integration	1
knockdown	1
linkage	1
mas5	1
microarray_analysis	1
microarray_protocol	1
ms_tnaffy	1
mv	1
name	1
probe	1
probe_design	1
probesummary	1
qtl	1
rank-aggregation	1
rma	1
rna_quality	1
saliva	1
seq	1
skin	1
sma_exon	1
stem	1
survival_analysis	1
tissue	1
transcription	1
web	1

Tag affy [150 articles] Export

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