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Tag algorithm [960 articles]

Recent papers classified by the tag algorithm.
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to algorithm alignment evolution sequence by zwang on 2007-09-01 17:08:49 as ** along with 9 people and 2 groups smbe2008 mdimmic rvosa timflutre stajich cabbagezs groepl yoanjacquemin marti Bioinformatics FAB-lab
  • What are artificial neural networks?
    Nature Biotechnology, Vol. 26, No. 2., pp. 195-197.
    by Anders Krogh
    posted to algorithm network neural by zwang on 2008-02-19 13:04:27 as ** along with 10 people mjoach ale adacier jfr Yanno jyuh dullhunk cabbagezs asddd sci91078
  • Accuracy of structure-based sequence alignments of automatic methods
    BMC Bioinformatics, Vol. 8 (20 September 2007), 355.
    by Changhoon Kim, Byungkook Lee
    posted to accuracy algorithm alignment sequence structure by zwang on 2007-11-01 07:29:02 as *** along with 3 people rabio dimka chad_davis
  • Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Chang S Kim
    posted to algorithm bayesian gene network regulatory reverse-engineering by zwang on 2007-07-13 17:20:00 as *** along with 4 people jyuh rdiaz frohike shigepong
  • Dataflow query execution in a parallel main-memory environment
    Distributed and Parallel Databases, Vol. 1, No. 1. (1 January 1993), pp. 103-128.
    by Annita N Wilschut, Peter M Apers
    posted to algorithm dbms join query by zflavio on 2007-12-17 21:06:15 as ***** along with 1 person myui
  • Resolving the fairness issue in bus-based optical access networks
    Communications Magazine, IEEE, Vol. 42, No. 11. (2004), pp. S12-S18.
    by N Bouabdallah, E Dotaro, L Ciavaglia, N Le Sauze, G Pujolle
    posted to algorithm architecture bucket bus control dborn descriptors distribution dual ethernet limitations network optical packet remote ring size tcard token traffic using by ze on 2008-02-14 18:27:07 as read
  • A Multi-radio 802.11 Mesh Network Architecture
    Mobile Networks and Applications
    by Krishna Ramachandran, Irfan Sheriff, Elizabeth Belding, Kevin Almeroth
    posted to wireless wcett topology-aware tic split self-interference selection search scheme router redundant protocol network multi-radio modular mesh mcube interference-aware interference first extent ett diversity channel cde breadth bfs-ca assignment architecture algorithm by ze on 2008-07-25 12:04:08 as read
  • Distributed Algorithm for Traffic Grooming in IP-over-WDM Network
    EUROCON, 2007. The International Conference on "Computer as a Tool" (2007), pp. 2144-2149.
    by J Coimbra, NSC Correia, MCR Medeiros
    posted to algorithm bandwidth grooming induced by ze on 2008-04-04 15:28:16 as read
  • A Manageable and Bandwidth Effective Solution for Traffic Grooming in IP-over-WDM Networks
    Networking and Services, 2007. ICNS. Third International Conference on (2007), pp. 79-79.
    by NSC Correia, J Coimbra, MCR Medeiros
    posted to algorithm bandwidth grooming induced oxc by ze on 2008-04-04 15:24:48 as read
  • Optimal utility-based bandwidth allocation over integrated optical and WiMAX networks
    Optical Fiber Communication Conference, 2006 and the 2006 National Fiber Optic Engineers Conference. OFC 2006 (2006), 3 pp..
    by Peng Lin, Chunming Qiao, Ting Wang, Junqiang Hu
    posted to video-on-demand optical-wireless hybrid bandwidth-allocation algorithm by ze on 2008-05-07 19:03:27 as *
  • Hybrid Wireless-Optical Broadband-Access Network (WOBAN): A Review of Relevant Challenges
    Lightwave Technology, Journal of, Vol. 25, No. 11. (2007), pp. 3329-3340.
    by S Sarkar, S Dixit, B Mukherjee
    posted to woban wireless-optical wireless wimax wifi we-pon wdm turbolight towerstream tolerance sprint simulated shortest setup routing risk-and-delay-aware random quad-play protocol protection predictive-throughput placement path optimization novera nextel network mobile mixed-integer-programming minimum-hop migrate joint ip hybrid host-identity greedy future fault deterministic deployments delay-aware combinatorial celular architecture annealing algorithm access by ze on 2008-05-05 14:26:42 as read
  • Quality of service support over SUCCESS-DWA: a highly evolutional and cost-effective optical access network
    Optical Fiber Communication Conference, 2005. Technical Digest. OFC/NFOEC, Vol. 4 (2005), 3 pp. Vol. 4.
    by Yu-Li Hsueh, MS Rogge, Wei-Tao Shaw, S Yamamoto, LG Kazovsky
    posted to algorithm cwdm qos scheduling success tdm wdm by ze on 2008-01-24 13:36:36 as read
  • Fast context-free grammar parsing requires fast boolean matrix multiplication
    J. ACM, Vol. 49, No. 1. (January 2002), pp. 1-15.
    by Lillian Lee
    posted to parsing algorithm by yoriyuki on 2008-07-14 01:58:03 as ** along with 1 person msakai
  • The degree of participation concept in ad hoc networks
    Computers and Communication, 2003. (ISCC 2003). Proceedings. Eighth IEEE International Symposium on (2003), pp. 197-202 vol.1.
    by Y Iraqi, R Boutaba
    posted to algorithm eni network optimization protocol routing by yish on 2006-01-17 22:39:11 as ** along with 4 groups mathgamespatterns dtl vds-arg eni
  • A Social Network for Societal-Scale Decision-Making Systems
    (11 Dec 2004)
    by Marko Rodriguez, Daniel Steinbock
    posted to algorithm democracy emergent eni eni-dtl networks social socialnetworks by yish on 2006-02-16 15:49:48 as ** along with 5 people and 5 groups stefanherzog JmSeigneur ddahlem gagliol suizan mathgamespatterns dtl vds-arg ACS-Basel eni
  • Statistics of cycles in large networks
    (20 Jun 2005)
    by Konstantin Klemm, Peter F Stadler
    posted to algorithm combinatorics complexity eni graphs mathematics networks probablistic social by yish on 2006-02-08 00:25:00 as ** along with 2 people and 4 groups thecolourblue madhadron mathgamespatterns dtl vds-arg eni
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to algorithm by yas on 2006-06-23 15:24:02 as ** along with 41 people and 5 groups granujilla benwei ashaytan camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Algorithms for Non-negative Matrix Factorization
    (2000), pp. 556-562.
    by Daniel D Lee, Sebastian H Seung
    posted to algorithm by yas on 2006-03-06 06:56:02 as ** along with 11 people and 3 groups vlachmore dragonrez anar luispedro pliz walkking aviad_work atbrew sugarexpletive phlow vsree007 T_lab Computer_Graphics csb_journal_club_public
  • Text comparison based on dynamic programming.
    IEEE Eng Med Biol Mag, Vol. 23, No. 6. (c 2004), pp. 66-71.
    by A Pertsemlidis, HR Garner
    posted to algorithm by yas on 2007-03-02 05:00:54 as ** along with 1 person and 2 groups irenas dbk-lab T_lab
  • On the Complexity of Processing Massive, Unordered, Distributed Data
    (22 May 2007)
    by Jon Feldman, S Muthukrishnan, Anastasios Sidiropoulos, Cliff Stein, Zoya Svitkina
    posted to algorithm distributed stream by yalding on 2008-01-27 22:12:30 as ****
  • Scheduling Algorithms for Procrastinators
    (14 Aug 2007)
    by Michael A Bender, Raphael Clifford, Kostas Tsichlas
    posted to algorithm scheduling by yalding on 2007-08-31 04:17:24 as *** along with 1 person mwmarkland
  • Randomized incremental construction of abstract Voronoi diagrams
    Comput. Geom. Theory Appl., Vol. 3, No. 3. (August 1993), pp. 157-184.
    by Rolf Klein, Kurt Mehlhorn, Stefan Meiser
    posted to algorithm geometry voronoi by yalding on 2006-09-22 07:26:20 as ****
  • Restricted delaunay triangulations and normal cycle
    (2003), pp. 312-321.
    by David Cohen-Steiner, Jean-Marie Morvan
    posted to algorithm delaunay surface triangulation by yalding on 2005-08-04 07:06:17 as **
  • Approximation algorithms for geometric shortest path problems
    (2000), pp. 286-295.
    by Lyudmil Aleksandrov, Anil Maheshwari, J&\#246;rg-R&\#252;diger Sack
    posted to algorithm approximation geometry optimization by yalding on 2005-08-20 08:22:02 as ** along with 1 person ansobol
  • The Weighted Maximum-Mean Subtree and Other Bicriterion Subtree Problems
    (16 Aug 2005)
    by Josiah Carlson, David Eppstein
    posted to algorithm optimization tree by yalding on 2005-08-18 04:37:25 as **
  • Fourier meets M\
    (21 Nov 2006)
    by Andreas Björklund, Thore Husfeldt, Petteri Kaski, Mikko Koivisto
    posted to algorithm fft stoc by yalding on 2007-02-21 08:19:59 as ** along with 2 people proportional TooMuchCoffeeMan
  • Approximate graph coloring by semidefinite programming
    J. ACM, Vol. 45, No. 2. (March 1998), pp. 246-265.
    by David Karger, Rajeev Motwani, Madhu Sudan
    posted to algorithm approximation coloring sdp by yalding on 2007-06-14 10:01:17 as ***** along with 1 person and 4 groups euclid Algorithms metric_embeddings TCS Polytopes
  • Computing Betti numbers via combinatorial Laplacians
    (1996), pp. 386-391.
    by Joel Friedman
    posted to algorithm eigen by yalding on 2005-10-04 15:48:52 as read along with 1 person ansobol
  • Budget Optimization in Search-Based Advertising Auctions
    (8 Dec 2006)
    by Jon Feldman, S Muthukrishnan, Martin Pal, Cliff Stein
    posted to algorithm auction game random search by yalding on 2007-03-09 15:02:20 as ***
  • Stable distributions, pseudorandom generators, embeddings, and data stream computation
    J. ACM, Vol. 53, No. 3. (May 2006), pp. 307-323.
    by Piotr Indyk
    posted to algorithm embedding stream by yalding on 2007-05-15 08:11:31 as **** along with 3 people Operator asterix77 ansobol
  • Online Conflict-Free Coloring for Intervals
    SIAM Journal on Computing, Vol. 36, No. 5. (2006), pp. 1342-1359.
    by Ke Chen, Amos Fiat, Haim Kaplan, Meital Levy, Jiri Matoušek, Elchanan Mossel, Janos Pach, Micha Sharir, Shakhar Smorodinsky, Uli Wagner, Emo Welzl
    posted to geometry coloring approximation algorithm by yalding on 2007-02-01 15:32:36 as **
  • Shape dimension and intrinsic metric from samples of manifolds with high co-dimension
    (2003), pp. 329-337.
    by Joachim Giesen, Uli Wagner
    posted to geometry algorithm computational detection dimension by yalding on 2005-02-24 06:30:06 as read along with 1 person gane5h
  • Fast Global Minimization of the Active Contour/Snake Model
    Journal of Mathematical Imaging and Vision, Vol. 28, No. 2. (23 June 2007), pp. 151-167.
    by Xavier Bresson, Selim Esedoḡlu, Pierre Vandergheynst, Jean-Philippe Thiran, Stanley Osher
    posted to active-contours algorithm level-sets segmentation by xtizon on 2007-08-27 15:37:12 as *****
  • Evolving core promoter signal motifs
    Evolutionary Computation, 2001. Proceedings of the 2001 Congress on, Vol. 2 (2001), pp. 1162-1169 vol. 2.
    by D Corne, A Meade, R Sibly
    posted to algorithm evolutionary by xili03 on 2008-03-14 03:27:29 as read
  • Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by T Waleev, D Shtokalo, T Konovalova, N Voss, E Cheremushkin, P Stegmaier, O Kel-Margoulis, E Wingender, A Kel
    posted to genetic algorithm by xili03 on 2008-04-29 08:10:02 as **
  • Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1190-1197.
    by A Kel, T Konovalova, T Waleev, E Cheremushkin, O Kel-Margoulis, E Wingender
    posted to genetic algorithm by xili03 on 2008-04-29 08:01:34 as **
  • Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes.
    Funct Integr Genomics, Vol. 3, No. 3. (July 2003), pp. 125-134.
    by A Sandelin, A Höglund, B Lenhard, WW Wasserman
    posted to algorithm by xili03 on 2008-04-21 03:55:29 as ** along with 2 people aalibes nklee
  • GAME: detecting cis-regulatory elements using a genetic algorithm
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1577-1584.
    by Wei, Zhi, Jensen, T Shane
    posted to algorithm genetic by xili03 on 2008-01-15 03:30:28 as read
  • Motif discovery in upstream sequences of coordinately expressed genes
    Evolutionary Computation, 2003. CEC '03. The 2003 Congress on, Vol. 3 (2003), pp. 1596-1603 Vol.3.
    by M Stine, D Dasgupta, S Mukatira
    posted to algorithm genetic by xili03 on 2008-01-15 03:28:59 as **
  • Identification of weak motifs in multiple biological sequences using genetic algorithm
    (2006), pp. 271-278.
    by Topon K Paul, Hitoshi Iba
    posted to algorithm genetic by xili03 on 2008-01-15 03:25:53 as ***
  • FMGA: finding motifs by genetic algorithm
    Bioinformatics and Bioengineering, 2004. BIBE 2004. Proceedings. Fourth IEEE Symposium on (2004), pp. 459-466.
    by FFM Liu, JJP Tsai, RM Chen, SN Chen, SH Shih
    posted to algorithm genetic by xili03 on 2008-01-15 03:24:09 as read along with 1 person princeindia
  • Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
    Genome Res., Vol. 15, No. 8. (1 August 2005), pp. 1145-1152.
    by Jason Gertz, Linda Riles, Peter Turnbaugh, Su-Wen Ho, Barak A Cohen
    posted to algorithm genetic by xili03 on 2008-01-15 03:22:12 as ** along with 1 person nklee
  • A GA Approach to the Definition of Regulatory Signals in Genomic Sequences
    Genetic and Evolutionary Computation – GECCO 2004 (2004), pp. 380-391.
    by Giancarlo Mauri, Roberto Mosca, Giulio Pavesi
    posted to genetic algorithm by xili03 on 2008-04-29 04:29:24 as **
  • MDGA: motif discovery using a genetic algorithm
    (2005), pp. 447-452.
    by Dongsheng Che, Yinglei Song, Khaled Rasheed
    posted to algorithm genetic by xili03 on 2008-01-15 03:19:45 as read
  • TFBS identification by position- and consensus-led genetic algorithm with local filtering
    (2007), pp. 377-384.
    by Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee
    posted to algorithm genetic by xili03 on 2008-01-15 02:59:10 as read
  • Finding motifs using random projections.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 225-242.
    by J Buhler, M Tompa
    posted to algorithm by xili03 on 2008-04-08 12:22:20 as ** along with 1 person dquest
  • On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by S Sinha
    posted to algorithm by xili03 on 2008-07-09 06:03:48 as ** along with 2 people eckart_bindewald samal
  • A Clustering Method for Improving the Global Search Capability of Genetic Algorithms
    (2000)
    by Leizer Schnitman, Takashi Yoneyama
    posted to algorithm genetic by xili03 on 2008-04-22 02:00:15 as **
  • Fitness sharing and niching methods revisited
    Evolutionary Computation, IEEE Transactions on, Vol. 2, No. 3. (1998), pp. 97-106.
    by B Sareni, L Krahenbuhl
    posted to algorithm genetic by xili03 on 2008-04-22 00:41:00 as **
  • A self-adaptive mate selection model for genetic programming
    Evolutionary Computation, 2005. The 2005 IEEE Congress on, Vol. 3 (2005), pp. 2707-2714 Vol. 3.
    by R Fry, Smith, AM Tyrrell
    posted to algorithm genetic by xili03 on 2008-04-22 00:40:31 as **
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