Tag algorithm [more than 800 articles] Export

Recent papers classified by the tag algorithm.

	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to variation structure sequencing genome combinatorics algorithm by n00c on 2009-11-06 17:06:53 as along with 16 people rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	An Efficient Boosting Algorithm for Combining Preferences [My Copy] In ICML '98: Proceedings of the Fifteenth International Conference on Machine Learning (1998), pp. 170-178. by Yoav Freund, Raj D. Iyer, Robert E. Schapire, Yoram Singer posted to ranking rankboost boost algorithm by eddymier on 2009-11-06 03:36:58 as
	An updated version of the Motion4D-library☆ [My Copy] Computer Physics Communications (27 October 2009) by Thomas Müller, Frank Grave posted to worldline special relativity ray particle motion4d motion light equation-of-motion algorithm by michaelbussmann on 2009-11-05 17:39:09 as
	An events based algorithm for distributing concurrent tasks on multi-core architectures [My Copy] Computer Physics Communications (14 October 2009) by David W. Holmes, John R. Williams, Peter Tilke posted to taks parallel multi event-driven distribution core concurrent algorithm by michaelbussmann on 2009-11-05 17:36:19 as
	Motion4D – A library for lightrays and timelike worldlines in the theory of relativity☆ [My Copy] Computer Physics Communications, Vol. 180, No. 11. (29 November 2009), pp. 2355-2360. by Thomas Müller, Frank Grave posted to worldline special relativity ray particle motion4d motion light equation-of-motion algorithm by michaelbussmann on 2009-11-05 17:32:58 as
	Algorithms [My Copy] (13 September 2006) by Sanjoy Dasgupta, Christos Papadimitriou, Umesh Vazirani posted to book algorithm by newdawn on 2009-11-05 14:42:30 as along with 1 person Fantozzi
	Introduction to Algorithms, Second Edition [My Copy] (01 September 2001) by Thomas H. Cormen, Charles E. Leiserson, Ronald L. Rivest, Clifford Stein posted to book algorithm by newdawn on 2009-11-05 14:41:49 as along with 21 people seb1 n00c ekatsyrk jmmcg Gorzomagnificent Fantozzi seninp dagmar citeUlike123 jcheng dragonrez marciolima gurkanbebek tmarscha dodger042 napvasconcelos chandlerc csacca pawelt eporreca sven_luzar
	The Substructure Hierarchy in Dark Matter Haloes [My Copy] (2 Nov 2009) by Carlo Giocoli, Giuseppe Tormen, Ravi K. Sheth, Frank C. van den Bosch posted to halo-substructures dark-matter-halo algorithm by tszkali on 2009-11-04 20:25:20 as along with 1 person faltenbacher
	MISTRAL: a tool for energy-based multiple structural alignment of proteins [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2663-2669. by Cristian Micheletti, Henri Orland posted to software nov09 multiple_structural_alignment energy_minimization alignment algorithm by nickolay on 2009-11-03 21:08:02 as along with 2 people and 1 group jforment reyez Bioinformatics Core Service
	ANNIE: integrated de novo protein sequence annotation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W435-440. by Hong S. Ooi, Chia Y. Kwo, Michael Wildpaner, et al.Fernanda L. Sirota, Birgit Eisenhaber, Sebastian Maurer-Stroh, Wing C. Wong, Alexander Schleiffer, Frank Eisenhaber, Georg Schneider posted to web pipeline genome fungal_genomes functional families annotation algorithm by nlapalu on 2009-11-03 12:50:46 as along with 5 people Thaverkamp druvus dullhunk guhjy renatomilani
	REPuter: the manifold applications of repeat analysis on a genomic scale. [My Copy] Nucleic acids research, Vol. 29, No. 22. (15 November 2001), pp. 4633-4642. by S. Kurtz, J. V. Choudhuri, E. Ohlebusch, C. Schleiermacher, J. Stoye, R. Giegerich posted to repeats bioinformatics algorithm by timflutre on 2009-11-02 21:48:48 as along with 2 people druvus yoanjacquemin
	Astronomical image processing based on fractional calculus: the AstroFracTool [My Copy] (26 Oct 2009) by Roberto Marazzato, Amelia C. Sparavigna posted to software images image_restoration image_processing_tools algorithm by VitalyAstro on 2009-11-02 14:06:51 as along with 1 person ibis
	Data Mining for Dwarf Novae in SDSS, GALEX and Astrometric Catalogues [My Copy] (19 Oct 2009) by Patrick Wils, Boris T. Gaensicke, Andrew J. Drake, John Southworth posted to spectroscopy data_mining data_analysis cvs algorithm by VitalyAstro on 2009-11-02 14:04:55 as
	On the Reusability and Numeric Efficiency of C++ Packages in Scientific Computing [My Copy] In In The ClusterWorld Conference and Expo (2003), pp. 23-26. by Ulisses Mello, Ildar Khabibrakhmanov posted to scientific numerical computing c algorithm by michaelbussmann on 2009-11-02 08:15:05 as
	Applied Numerical Linear Algebra [My Copy] (01 August 1997) by James W. Demmel posted to numerical_linear_algebra numerical_analysis linear_algebra book algorithm by jjrohal on 2009-10-30 19:15:21 as along with 1 person endersdouble
	Efficient Method for Predicting Crystal Structures at Finite Temperature: Variable Box Shape Simulations [My Copy] Physical Review Letters, Vol. 103, No. 18. (30 October 2009), 188302. by Laura Filion, Matthieu Marechal, Bas van Oorschot, Daniël Pelt, Frank Smallenburg, Marjolein Dijkstra posted to variable structure simulation shape monte-carlo method mc crystal box algorithm by michaelbussmann on 2009-10-30 18:20:02 as
	Finding pathways between distant local minima [My Copy] The Journal of Chemical Physics, Vol. 122, No. 23. (2005), 234903. by Joanne M. Carr, Semen A. Trygubenko, David J. Wales posted to algorithm by ckmyo on 2009-10-30 14:33:38 as along with 1 person daevans
	Nuevo algoritmo para la investigacion de los caminos hamiltonianos de los grafos [My Copy] Trabajos de Estadística y de Investigación Operativa, Vol. 16, No. 1. (1 February 1965), pp. 19-20. by Antonio de Trocóniz posted to graph algoritmo algorithm by iurien on 2009-10-30 11:43:32 as
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing. [My Copy] Bioinformatics (Oxford, England) (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to short-read map gnumap algorithm by n00c on 2009-10-28 23:01:09 as along with 3 people operon heliopais druvus
	Clinical application of incretin-based therapy: therapeutic potential, patient selection and clinical use. [My Copy] European journal of internal medicine, Vol. 20 Suppl 2 (July 2009), pp. S329-S339. by David M. Kendall, Robert M. Cuddihy, Richard M. Bergenstal posted to type2 therapeutic incretins diabetes algorithm by capaiz on 2009-10-28 15:29:48 as
	Expanding Treatment Options for Type 2 Diabetes: The Old and the New [My Copy] The Diabetes Educator, Vol. 35, No. Supplement_1. (1 January 2009), pp. 4S-11. by Richard E. Pratley posted to type2 therapeutic diabetes algorithm by capaiz on 2009-10-28 15:03:24 as
	ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2882-2889. by Gerald Quon, Quaid Morris posted to sequencing python predict gene expression cancer algorithm by torfinnnome on 2009-10-28 15:01:57 as along with 4 people ptrobajo brianb nuin bgordski
	Reusable object-oriented solutions for numerical simulation of PDEs in a high performance environment [My Copy] Scientific Programming, Vol. 14, No. 2. (1 January 2006), pp. 111-139. by Andrea Lani, Tiago Quintino, Dries Kimpe, Herman Deconinck, Stefan Vandewalle, Stefaan Poedts posted to solver pde object-oriented numerical high-performance computing algorithm by michaelbussmann on 2009-10-28 13:04:27 as
	Multiple right-hand side techniques for the numerical simulation of quasistatic electric and magnetic fields☆ [My Copy] Journal of Computational and Applied Mathematics, Vol. 215, No. 2. (01 June 2008), pp. 328-338. by M. Clemens, M. Helias, T. Steinmetz, G. Wimmer posted to static solver simulation numerical magnetic field electric algorithm by michaelbussmann on 2009-10-28 12:56:31 as
	Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse [My Copy] Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to tools tfbs prediction motifs motif-discovery algorithm by isimpson on 2009-10-27 14:16:21 as along with 1 person and 1 group daveGerrard BergmanLab
	The Status of the P versus NP Problem [My Copy] Communications of the ACM, Vol. 52, No. 9. (September 2009), pp. 78-86. by Lance Fortnow edited by Moshe Y. Vardi posted to survey problem polynomialtime nonpolynomialtime mathematic complexity algorithm by shtrom on 2009-10-27 08:41:30 as along with 9 people knuu naveer sanxiyn jirak perhaad laurap dimvar ajholanda gvdh
	Enhanced Sampling in the Well-Tempered Ensemble [My Copy] (29 Oct 2009) by M. Bonomi, M. Parrinello posted to wte well_tempered parallel_tempering numerical_simulation ising algorithm 2d by marinari on 2009-10-27 08:26:46 as along with 1 person itmeson
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to phylogenetics evolution alignment algorithm by operon on 2009-10-26 18:17:31 as along with 28 people and 3 groups TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Joining forces in the quest for orthologs [My Copy] Genome Biology, Vol. 10, No. 9. (2009), 403. by Toni Gabaldon, Christophe Dessimoz, Julie H. Jones, Albert Vilella, Erik Sonnhammer, Suzanna Lewis posted to ortholog evolution algorithm by operon on 2009-10-26 18:15:52 as along with 5 people and 1 group kshameer tmmurali bdessailly ppgardne druvus Journal picks
	Algorithms for optimal protein structure alignment [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2751-2756. by Aleksandar Poleksic posted to structure protein algorithm by operon on 2009-10-26 18:15:15 as along with 5 people and 1 group barry kshameer nickolay kevinzheng1983 neils structural_bioinformatics
	Expertise networks in online communities: structure and algorithms [My Copy] In WWW '07: Proceedings of the 16th international conference on World Wide Web (2007), pp. 221-230. by Jun Zhang, Mark S. Ackerman, Lada Adamic posted to social_network algorithm by wayneisfine on 2009-10-26 09:03:49 as along with 5 people and 1 group adamsi brusilovsky ChaTo donade dquercia Social Web
	Flux-corrected transport. I. SHASTA, a fluid transport algorithm that works [My Copy] Journal of Computational Physics, Vol. 11, No. 1. (January 1973), pp. 38-69. by J. Boris, D. Book posted to transport simulation ftc flux fluid correction algorithm by michaelbussmann on 2009-10-25 18:01:34 as along with 1 person pulsus-morbi
	Closed-loop insulin delivery-the path to physiological glucose control. [My Copy] Advanced drug delivery reviews, Vol. 56, No. 2. (10 February 2004), pp. 125-144. by G. M. Steil, A. E. Panteleon, K. Rebrin posted to closed-loop cgms algorithm-closed-loop algorithm by ggrassi on 2009-10-25 15:59:17 as
	Numerical solution of initial boundary value problems involving maxwell's equations in isotropic media [My Copy] Antennas and Propagation, IEEE Transactions on In Antennas and Propagation, IEEE Transactions on [legacy, pre - 1988], Vol. 14, No. 3. (06 January 2003), pp. 302-307. by Kane Yee posted to value solver relativistic mesh medium maxwell isotropic grid finite equation difference boundary algorithm by michaelbussmann on 2009-10-25 11:47:19 as along with 3 people nikunj1729 gsm104 champak
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to phylogenetics genomics bioinformatics alignment_methods alignment algorithm by operon on 2009-10-25 06:08:29 as along with 32 people and 2 groups walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Double precision floating-point arithmetic on FPGAs [My Copy] Field-Programmable Technology (FPT), 2003. Proceedings. 2003 IEEE International Conference on (22 March 2004), pp. 352-358. by S. Paschalakis, P. Lee posted to fpga altera algorithm by mzabidi on 2009-10-23 17:00:08 as along with 1 person dcastro
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to sequencing algorithm by bozdagd on 2009-10-22 18:54:22 as along with 17 people and 1 group seb1 adijr heliopais darian maren n00c nuin skembel cassj Neeperando helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to sequencing bwt algorithm by bozdagd on 2009-10-22 18:53:34 as along with 29 people and 4 groups adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to sequencing algorithm by bozdagd on 2009-10-22 18:52:54 as along with 16 people fishtank burak ThomasDOtto n00c mmartin natstreet adijr druvus felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing algorithm by bozdagd on 2009-10-22 18:51:48 as along with 28 people and 1 group leemachado daed gbenson n00c dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	ZOOM! Zillions of oligos mapped. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to sequencing algorithm by bozdagd on 2009-10-22 18:49:35 as along with 18 people adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet druvus caseybrown djkt wisdom_love umit Neeperando Stew
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to sequencing algorithm by bozdagd on 2009-10-22 18:48:56 as along with 18 people and 4 groups ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	A fully parallel 3D thinning algorithm and its applications [My Copy] Comput. Vis. Image Underst., Vol. 64, No. 3. (1996), pp. 420-433. by C. Min Ma, Milan Sonka posted to vessel skeletonization image-processing algorithm by laistler on 2009-10-22 15:13:01 as
	Finding community structure in networks using the eigenvectors of matrices [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 3. (2006), 036104. by M. E. J. Newman posted to topology network motif modularity algorithm by tomhebbron on 2009-10-21 11:28:20 as along with 9 people and 1 group AaronMcDaid lawraga studentx vtraag muraken cgaugain bigbossman hannu Diego_Prada ThinkTank
	A content-driven reputation system for the wikipedia [My Copy] In WWW '07: Proceedings of the 16th international conference on World Wide Web (2007), pp. 261-270. by B. Thomas Adler, Luca de Alfaro posted to wikipedia text reputation analysis algorithm by alhoori on 2009-10-21 03:55:05 as along with 13 people and 2 groups nliu82 cmalek mahart456 hongliangjie dtd elsantosneto ChaTo ljian aarontaycheehsien jfelipe qili jgronski krisl Social Web UX research updates
	Significant speedup of database searches with HMMs by search space reduction with PSSM family models. [My Copy] Bioinformatics (Oxford, England) (14 October 2009), btp593. by Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz posted to pssm phmm hmm database data-mining analysis algorithm by kshameer on 2009-10-20 12:45:33 as along with 2 people operon druvus
	Using a Hash-Based Method for Apriori-Based Graph Mining [My Copy] Knowledge Discovery in Databases: PKDD 2004 (2004), pp. 349-361. by Phu C. Nguyen, Takashi Washio, Kouzou Ohara, Hiroshi Motoda posted to apriori_algorithm algorithm by seninp on 2009-10-20 11:49:59 as
	Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6660-6667. by Hannah Carter, Sining Chen, Leyla Isik, et al.Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin posted to cancer bioinformatics annotation analysis algorithm by kshameer on 2009-10-20 07:59:26 as along with 5 people zufar chrisamiller burak ericrpaquet frohike
	A Fast Parallel Longest Common Subsequence Algorithm Based on Pruning Rules [My Copy] Computer and Computational Sciences, 2006. IMSCCS '06. First International Multi-Symposiums on, Vol. 1 (17 November 2008), pp. 27-34. by Wei Liu posted to lcs algorithm by seninp on 2009-10-19 23:04:25 as
	An Algorithm to Improve the Effectiveness of Apriori [My Copy] Cognitive Informatics, 6th IEEE International Conference on (08 October 2007), pp. 385-390. by Dongme Sun, Shaohua Teng, Wei Zhang, Haibin Zhu posted to apriori_algorithm algorithm by seninp on 2009-10-19 23:00:58 as

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structure	242
graph	207
simulation	169
genetic	163
alignment	160
clustering	148
network	147
binding	138
bioinformatics	129
statistics	126
optimization	115
software	115
microarray	114
analysis	107
networks	100
expression	99
parallel	96
complexity	89
ica	87
particle-in-cell	85
pic	82
evolution	80
prediction	80
data	72
review	72
complexes	71
modelling	70
search	70
proj_assembly	69
quantum	67
approximation	65
combinatorics	63
gene-prediction	59
numerical	57
classification	56
distributed	56
protein	56
computation	51
gene_set_analysis	51
database	50
feedback	48
math	47
programming	46
algorithms	45
modeling	45
set	45
enhancer-prediction	44
method	44
adaptive	43
mesh	43
tree	43
cs	41
functional_annotation	41
sequencing	40
grid	39
motif	39
classic	37
eeg	37
3d	36
computational	36
homology	36
plasma	36
probability	36
bayesian	35
learning	35
assembly	34
community	32
discrete	32
sequence	32
wireless	32
model	31
particle	31
systems	31
download	30
fast	30
monte-carlo	30
ppi	30
theory	30
computing	29
evolutionary	29
fourier	29
matrix	29
data-structure	28
detection	28
embl	28
gene	28
modularity	28
random	28
rank	28
similarity	28
em	27
image	27
phylogenetics	27
phylogeny	27
sorting	27
aggregation	26
docking	26
proj_interprets	26
routing	26
time	26

Tag algorithm [more than 800 articles] Export

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