Tag alignment [at least 200 articles] Export

Recent papers classified by the tag alignment.

	Structural relationships among proteins with different global topologies and their implications for function annotation strategies [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17377-17382. by Donald Petrey, Markus Fischer, Barry Honig posted to structural alignment by apaydin on 2009-11-08 07:45:55 as along with 5 people and 1 group philcarter carlosjavierna TRHvidsten zwang phoenixzxl Orengo Group Journal Picks
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to pachter good-stuff fsa berkeley alignment by seb1 on 2009-11-07 22:26:02 as along with 18 people and 1 group rdowell timflutre natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin AlexBateman djkt druvus Journal picks
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to solexa alignment by maren on 2009-11-06 23:21:09 as along with 30 people and 4 groups bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing. [My Copy] Protein engineering, Vol. 16, No. 12. (December 2003), pp. 913-923. by A. Williams, D. R. Gilbert, D. R. Westhead posted to structure fold-evolution alignment by martainn on 2009-11-06 18:50:16 as
	Statistical Tools to Analyze Data Representing a Sample of Curves [My Copy] The Annals of Statistics, Vol. 20, No. 3. (September 1992), pp. 1266-1305. by Alois Kneip, Theo Gasser posted to alignment by olberd on 2009-11-06 13:24:43 as
	EMBOSS: The European Molecular Biology Open Software Suite [My Copy] Trends in Genetics, Vol. 16, No. 6. (1 June 2000), pp. 276-277. by P. Rice posted to software alignment by natstreet on 2009-11-05 10:36:51 as along with 2 people Cortel gennttll
	Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 40. (6 October 2009), pp. 17077-17082. by Gregory E. Sims, Se-Ran R. Jun, Guohong Albert A. Wu, Sung-Hou H. Kim posted to phylogenetics mammals kmer alignment by djkt on 2009-11-04 22:44:52 as along with 7 people wendygarnica Geknitics jsatkosk mkiyer antariksh sujaikumar bpcusack
	Pairwise curve synchronization for functional data [My Copy] Biometrika, Vol. 95, No. 4. (1 December 2008), pp. 875-889. by Rong Tang, Hans-Georg Muller posted to alignment by olberd on 2009-11-04 14:50:08 as
	Time-synchronized clustering of gene expression trajectories [My Copy] Biostat, Vol. 10, No. 1. (1 January 2009), pp. 32-45. by Rong Tang, Hans-Georg Muller posted to alignment by olberd on 2009-11-04 14:45:14 as along with 1 person lptolik
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to ngs mapping alignment by natstreet on 2009-11-04 07:31:37 as along with 9 people Thaverkamp jasontsai seb1 druvus chvlyl GeeSharpMinor n00c venancio desany
	MISTRAL: a tool for energy-based multiple structural alignment of proteins [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2663-2669. by Cristian Micheletti, Henri Orland posted to software nov09 multiple_structural_alignment energy_minimization alignment algorithm by nickolay on 2009-11-03 21:08:02 as along with 2 people and 1 group jforment reyez Bioinformatics Core Service
	Database-text alignment via structured multilabel classification [My Copy] In IJCAI'07: Proceedings of the 20th international joint conference on Artifical intelligence (2007), pp. 1713-1718. by Benjamin Snyder, Regina Barzilay posted to text_generation probabilistic multilabel context_to_text alignment by sinantie on 2009-11-02 14:04:46 as
	Global Models of Document Structure using Latent Permutations [My Copy] In Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics (June 2009), pp. 371-379. by Harr Chen, S. R. K. Branavan, Regina Barzilay, David R. Karger posted to text_generation segmentation probabilistic mallows alignment by sinantie on 2009-11-02 13:32:56 as
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to alignment by antonkratz on 2009-11-02 09:09:13 as along with 24 people adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
	MicroRazerS: Rapid alignment of small RNA reads [My Copy] Bioinformatics (29 October 2009), btp601. by Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling posted to rna-seq next_generation alignment by druvus on 2009-11-02 08:11:59 as along with 1 person heliopais
	RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (12 November 2008), 478. by James Hane, Richard Oliver posted to tool rip genome fungal_genomes alignment by nlapalu on 2009-10-30 17:07:17 as along with 2 people operon jamselem
	Non-Rigid Range-Scan Alignment Using Thin-Plate Splines [My Copy] In 3DPVT '04: Proceedings of the 3D Data Processing, Visualization, and Transmission, 2nd International Symposium (2004), pp. 759-765. by B. J. Brown, S. Rusinkiewicz posted to tps registration range-data point-set point-based non-rigid-registration feature-based alignment by ben500 on 2009-10-30 12:05:26 as
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to software short-reads sequencing bwa alignment by torfinnnome on 2009-10-30 11:12:08 as along with 25 people and 6 groups agbiotec natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Improved algorithm for automated alignment of wafers via optimized features location [My Copy] Journal of Electronic Imaging, Vol. 18, No. 4. (2009), 043001. by Michael Parshin, Zeev Zalevsky posted to feature-extraction alignment by pick600 on 2009-10-30 07:22:39 as
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted to mpss alignment by maren on 2009-10-29 22:11:54 as along with 9 people megraw djkt fstrozzi jamselem justinhjohnson torfinnnome reyez natstreet druvus
	GMAP: a genomic mapping and alignment program for mRNA and EST sequences [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1859-1875. by Thomas D. Wu, Colin K. Watanabe posted to mrna mpss alignment by maren on 2009-10-29 21:33:58 as along with 5 people bozdagd natstreet druvus olympos yoanjacquemin
	Multiple Sequence Alignment in Phylogenetic Analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (September 2000), pp. 317-330. by A. Phillips posted to sequence alignment by nuin on 2009-10-29 14:10:41 as along with 4 people operon aprasad ziquje stormybriggs
	Characterization of Motility Properties of Kinesin-Driven Microtubules Towards Nano-Scale Transporter: Focusing on Length of Microtubules and Kinesin Density [My Copy] Journal of Biomechanical Science and Engineering, Vol. 3, No. 4. (2008), pp. 510-519. by Shukei Sugita, Naoya Sakamoto, Toshiro Ohashi, Masaaki Sato posted to microtubules kinesin directionality density c1ref alignment by rodney on 2009-10-29 07:36:03 as
	Compressed indexing and local alignment of DNA [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 791-797. by T. W. Lam, W. K. Sung, S. L. Tam, C. K. Wong, S. M. Yiu posted to tree-to-tree bwt-sw bwt alignment by gbenson on 2009-10-28 19:57:43 as along with 6 people n00c druvus xwbcn antonkratz cap1 lp2
	FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1641-1650. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to software evolution alignment by druvus on 2009-10-28 09:51:36 as along with 8 people and 2 groups houniao007 pyilmaz rneches djkt ppgardne jwm skembel nuin iSEEM Journal picks
	A comparison of two algorithms for warping of analytical signals [My Copy] Analytica Chimica Acta, Vol. 456, No. 1. (1 April 2002), pp. 77-92. by V. Pravdova posted to alignment by olberd on 2009-10-27 13:06:41 as
	A comparison of three algorithms for chromatograms alignment [My Copy] Journal of Chromatography A, Vol. 1118, No. 2. (23 June 2006), pp. 199-210. by A. Vannederkassel, M. Daszykowski, P. Eilers, Y. Heyden posted to alignment by olberd on 2009-10-27 13:06:26 as
	The Alignment of Technology and Structure through Roles and Networks [My Copy] Administrative Science Quarterly, Vol. 35, No. 1. (1990), pp. 61-103. by Stephen R. Barley posted to technology structure roles networks alignment by derchao on 2009-10-27 03:38:32 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to phylogenetics evolution alignment algorithm by operon on 2009-10-26 18:17:31 as along with 28 people and 3 groups TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Exploratory visual analysis of conserved domains on multiple sequence alignments. [My Copy] BMC bioinformatics, Vol. 10 Suppl 11, No. Suppl 11. (2009), S7. by T. J. Jankun-Kelly, Andrew D. Lindeman, Susan M. Bridges posted to visualization software evolution bioinformatics alignment by operon on 2009-10-26 18:14:07 as along with 2 people and 1 group sillitoe kshameer Orengo Group Journal Picks
	SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. [My Copy] Molecular biology and evolution (23 October 2009), msp259. by Manolo Gouy, Stéphane Guindon, Olivier Gascuel posted to visualisation software next_generation alignment by druvus on 2009-10-26 07:46:59 as along with 1 person operon
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to phylogenetics genomics bioinformatics alignment_methods alignment algorithm by operon on 2009-10-25 06:08:29 as along with 32 people and 2 groups walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences [My Copy] Journal of Computational Biology (22 September 2009), 090922085727012. by Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike posted to solexa short_read jcb illumina alignment by seb1 on 2009-10-23 19:25:10 as along with 3 people justinhjohnson n00c druvus
	Hydrodynamics and Rheology of Active Polar Filaments [My Copy] Cell Motility (2008), pp. 177-206. by Tanniemola B. Liverpool, M. Cristina Marchetti posted to rheology polar microtubules hydrodynamics filament cross-over alignment by rodney on 2009-10-23 18:30:55 as
	Algorithms for optimal protein structure alignment [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2751-2756. by Aleksandar Poleksic posted to structure protein nov09 alignment algorithm by nickolay on 2009-10-23 17:56:15 as along with 5 people and 1 group barry operon kshameer kevinzheng1983 neils structural_bioinformatics
	Articulatory constraints on interpersonal postural coordination. [My Copy] Journal of Experimental Psychology: Human Perception and Performance, Vol. 33, No. 1. (2007), pp. 201-208. by Kevin Shockley, Aimee A. Baker, Michael J. Richardson, Carol A. Fowler posted to posture imitation body alignment by hkreysa on 2009-10-23 14:43:07 as
	The chameleon effect: The perception-behavior link and social interaction. [My Copy] Journal of Personality and Social Psychology, Vol. 76, No. 6. (1999), pp. 893-910. by Tanya L. Chartrand, John A. Bargh posted to priming movements body alignment by hkreysa on 2009-10-23 14:33:26 as
	A new method for revealing correlated mutations under the structural and functional constraints in proteins [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2506-2513. by Byung-Chul Lee, Dongsup Kim posted to mutation multiple evolution correlation alignment by jlike on 2009-10-23 13:57:05 as along with 4 people qluo operon zwang phoenixzxl
	Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. [My Copy] Genome research, Vol. 19, No. 4. (April 2009), pp. 521-532. by Melissa J. Fullwood, Chia-Lin L. Wei, Edison T. Liu, Yijun Ruan posted to pet ngs alignment by cthachuk on 2009-10-23 00:33:02 as along with 18 people and 1 group GustavoLacerda jandot inesdesantiago mkiyer rschulz guhjy lp2 natstreet druvus absterga coela hpaces orzenil idoerg behindtherabbit nuin djkt jbhiatt Chinnaiyan Lab
	RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2615-2616. by Nicole Cloonan, Qinying Xu, Geoffrey J. Faulkner, et al.Darrin F. Taylor, Dave T. P. Tang, Gabriel Kolle, Sean M. Grimmond posted to rna-seq ngs alignment by cthachuk on 2009-10-23 00:31:27 as along with 13 people and 1 group idonaldson ethanmj cassj GeeSharpMinor sbmontgomery shyamsg natstreet dswan druvus samgj n00c guhjy GustavoLacerda Journal picks
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to short-read rna-seq ngs alternative-splicing alignment by cthachuk on 2009-10-23 00:25:56 as along with 37 people maren jwfoley urgi RNA-protein heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Recent progress in multiple sequence alignment: a survey. [My Copy] Pharmacogenomics, Vol. 3, No. 1. (January 2002), pp. 131-144. by Cédric Notredame posted to survey sequence_alignment multiple_sequence_alignment compbio alignment by akshayk on 2009-10-19 19:28:23 as along with 1 person newton1234
	Slider--maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 6-13. by Nawar Malhis, Yaron S. N. Butterfield, Martin Ester, Steven J. M. Jones posted to software snp short-read sequencing probability mapping illumina alignment by torfinnnome on 2009-10-19 16:06:43 as along with 7 people seb1 orzenil jsatkosk n00c mdimon druvus jmeppley
	Feasibility Conditions for Interference Alignment [My Copy] (29 Apr 2009) by Cenk M. Yetis, Syed A. Jafar, Ahmet H. Kayran posted to interference feasibility alignment by fredknabe on 2009-10-19 15:26:53 as along with 1 person juhop
	Interference Alignment with Asymmetric Complex Signaling - Settling the Host-Madsen-Nosratinia Conjecture [My Copy] (1 Apr 2009) by Viveck R. Cadambe, Syed A. Jafar, Chenwei Wang posted to read interference complex asymmetric alignment by fredknabe on 2009-10-19 15:20:01 as
	Approaching the Capacity of Wireless Networks through Distributed Interference Alignment [My Copy] (26 Mar 2008) by Krishna Gomadam, Viveck R. Cadambe, Syed A. Jafar posted to read interference degrees alignment by fredknabe on 2009-10-19 15:18:21 as along with 1 person chinkeong
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to visualisation short-reads sequencing assembly alignment by torfinnnome on 2009-10-19 14:12:18 as along with 4 people jmeppley robsyme neils svenrahmann
	ABWGAT: Anchor Based Whole Genome Analysis Tool. [My Copy] Bioinformatics (14 October 2009), btp587. by Sarbashis Das, Anchal Vishnoi, Alok Bhattacharya posted to whole-genome-alignment alignment by natstreet on 2009-10-19 08:05:49 as along with 1 person druvus
	Streaming Algorithms for Biological Sequence Alignment on GPUs [My Copy] IEEE Transactions on Parallel and Distributed Systems, Vol. 18, No. 9. (2007), pp. 1270-1281. by Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang M. Wittig posted to gpu alignment by aheilbut on 2009-10-18 22:21:27 as
	Alignment by Maximization of Mutual Information [My Copy] Int. J. Comput. Vision, Vol. 24, No. 2. (1 September 1997), pp. 137-154. by Paul Viola, William M. Wells posted to rigid-registration registration reference mutual-information augmented-reality alignment 3d-models by ben500 on 2009-10-17 14:49:32 as along with 5 people robertmarti sonvu erikcmic handee jclau

Note: You may cite this page as: http://www.citeulike.org/tag/alignment

Result page: 1 2 3 4 5 6 7 8 9 10 Next

sequence	277
protein	186
bioinformatics	180
structure	171
software	167
algorithm	160
multiple	112
evolution	107
phylogeny	88
genome	82
method	74
rna	72
msa	58
phylogenetics	55
methods	54
accuracy	52
review	46
algorithms	45
sequencing	40
statistics	35
database	31
similarity	29
tool	29
genomics	28
dna	26
tools	26
prediction	25
face	24
testing	24
clustering	23
registration	23
microtubules	22
networks	22
homology	21
ngs	21
tree	21
2008	19
assembly	19
comparison	19
indel	19
proteins	19
hmm	18
network	18
annotation	17
mapping	17
motif	17
short-read	17
comparative	16
thesis	16
visualization	16
analysis	15
conserved	15
local	15
model	15
seq	15
alignment_accuracy	14
bayesian	14
molecular	14
pathways	14
phylogenomics	14
2007	13
data-mining	13
databases	13
indels	13
proteome	13
snp	13
structural	13
gene	12
major-proposal	12
modeling	12
multiple_sequence_alignment	12
nlp	12
noncoding	12
ontology	12
orientation	12
pair_project	12
proj_assembly	12
short	12
binding	11
comparative_genomics	11
conservation	11
dialogue	11
kinesin	11
new_paper	11
nextgen	11
primer	11
proteomics	11
read	11
sequence-alignment	11
sequences	11
solexa	11
comps	10
electrostatic	10
human	10
modelling	10
programming	10
recognition	10
scoring	10
selection	10
validation	10

Tag alignment [at least 200 articles] Export

Related Tags