Tag alignment [at least 200 articles] Export

Recent papers classified by the tag alignment.

	MUSTANG: A multiple structural alignment algorithm [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 559-574. by Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk posted to structure bioinformatics alignment by robfsouza on 2009-11-20 23:52:04 as along with 5 people and 3 groups karbak ana jwm rabio Thaverkamp structural_bioinformatics Bioinformatics Microbial-Ecology
	Linear Planning and the Automobile: Hilarion Gonzalez del Castillo's Colonizing Motorway, 1927--1936 [My Copy] Journal of Urban History, Vol. 35, No. 4. (1 May 2009), pp. 505-530. by Jose M. Coronado, F. Javier Rodriguez, Jose M. Urena posted to urbanism transportation transit traffic townscape towns town_planning town_planners theory spain shape motorways margins lines linear_city le_corbusier history hilarion_gonzalez_del_castillo highways highway_engineers form environment engineers engineering edges driving colonialism cars benton_mackaye automobile alignment activities 1930s 1920s by jannon on 2009-11-20 17:11:02 as
	Electronic Energy Levels in Individual Molecules, Thin Films, and Organic Heterojunctions of Substituted Phthalocyanines [My Copy] The Journal of Physical Chemistry B, Vol. 105, No. 21. (1 May 2001), pp. 4791-4800. by D. Schlettwein, K. Hesse, N. E. Gruhn, P. A. Lee, K. W. Nebesny, N. R. Armstrong posted to ultraviolet_photoelectron_spectroscopy photoelectron_spectra ionization_potential electronic_levels electronic_energy_levels electron_affinity alignment by JohnnyP on 2009-11-19 14:10:52 as
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to tool software resequencing mapper map genome bfast alignment algorithm by n00c on 2009-11-18 22:33:20 as along with 5 people friendpine zwang druvus torfinnnome idonaldson
	Reproducing the manual annotation of multiple sequence alignments using a SVM classifier [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3093-3098. by Christian Blouin, Scott Perry, Allan Lavell, Edward Susko, Andrew J. Roger posted to svm alignment by seb1 on 2009-11-18 20:04:07 as along with 1 person druvus
	Quantifying the local reliability of a sequence alignment. [My Copy] Protein engineering, Vol. 9, No. 2. (February 1996), pp. 127-132. by H. T. Mevissen, M. Vingron posted to bioinformatics alignment by timflutre on 2009-11-18 16:29:05 as
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing assembly alignment by owenlancaster on 2009-11-18 11:26:43 as along with 13 people and 1 group pst robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor n00c venancio desany Orengo Group Journal Picks
	Generating Homology Relationships by Alignment of Anatomical Ontologies [My Copy] Nature Precedings, No. 713. (4 August 2009) by Frederic B. Bastian, Gilles Parmentier, Marc Robinson-Rechavi posted to software ontology alignment algorithm by perkeo on 2009-11-18 11:19:38 as
	On the Accuracy of Homology Modeling and Sequence Alignment Methods Applied to Membrane Proteins [My Copy] Biophysical Journal, Vol. 91, No. 2. (15 July 2006), pp. 508-517. by L. Forrest, C. Tang, B. Honig posted to substitution structure sequence protein modelling membrane database alignment by sebk on 2009-11-17 16:44:17 as
	Enterprise Architecture: Challenges and Implementations [My Copy] Hawaii International Conference on System Sciences, Vol. 0 (2007), 217. by Frank Armour, Stephen Kaisler, Jeff Bitner posted to infrastructure information_technology_architecture enterprise_information_technology decisions cios business_operations architect alignment by joewilliams1 on 2009-11-17 03:57:25 as
	Functional Convex Averaging and Synchronization for Time-Warped Random Curves [My Copy] Journal of the American Statistical Association, Vol. 99, No. 467. (September 2004), pp. 687-699. by Xueli Liu, Hans-Georg Müller posted to alignment by olberd on 2009-11-16 13:15:28 as
	Dynamic Programming Alignment Accuracy [My Copy] Journal of Computational Biology, Vol. 5, No. 3. (January 1998), pp. 493-504. by I. A. N. Holmes, Richard Durbin posted to modeling bioinformatics alignment algorithm by timflutre on 2009-11-16 11:17:04 as
	Every genome sequence needs a good map [My Copy] Genome Research, Vol. 19, No. 11. (13 November 2009), pp. 1925-1928. by Harris A. Lewin, Denis M. Larkin, Joan Pontius, Stephen J. O'Brien posted to map genomics genome_sequence bioinformatics alignment by davidmam on 2009-11-13 10:29:29 as along with 4 people neils jasontsai druvus natstreet
	Landmark-Based Registration of Curves via the Continuous Wavelet Transform [My Copy] Journal of Computational and Graphical Statistics, Vol. 15, No. 3. (September 2006), pp. 542-564. by Jérémie Bigot posted to alignment by olberd on 2009-11-13 01:40:40 as
	Synchronizing sample curves nonparametrically [My Copy] The Annals of Statistics, Vol. 27, No. 2. (April 1999), pp. 439-460. by Theo Gasser, Kongming Wang posted to alignment by olberd on 2009-11-13 01:33:21 as
	Functional Data Analysis [My Copy] (08 June 2005) by J. O. Ramsay, B. W. Silverman posted to statistics software overview alignment by olberd on 2009-11-13 01:28:46 as along with 3 people surajitray amsantos brent_lance
	The selection of acceptable protein mutations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 24. (12 June 2007), pp. 10080-10085. by Rajkumar Sasidharan, Cyrus Chothia posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 15:52:05 as along with 3 people aalibes gpalidwor zwang
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure fold-evolution evolution alignment 1barrel by martainn on 2009-11-12 14:50:55 as along with 13 people and 6 groups ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The effect of sequence evolution on protein structural divergence. [My Copy] Molecular biology and evolution, Vol. 26, No. 5. (1 May 2009), pp. 1055-1065. by Simon G. Williams, Simon C. Lovell posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 14:27:05 as along with 3 people robfsouza djkt bpcusack
	Curve registration by local regression [My Copy] Canadian Journal of Statistics, Vol. 28, No. 1. (2000), pp. 19-29. by A. Kneip, X. Li, K. B. MacGibbon, J. O. Ramsay posted to alignment by olberd on 2009-11-12 12:34:54 as
	Self-Modelling Warping Functions [My Copy] Journal of the Royal Statistical Society. Series B (Statistical Methodology), Vol. 66, No. 4. (2004), pp. 959-971. by Daniel Gervini, Theo Gasser posted to alignment by olberd on 2009-11-12 10:47:29 as
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to tool sequence_comparison history alignment by mtaschuk on 2009-11-12 10:16:28 as along with 75 people and 6 groups krapnik azazello rshe sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Rapid detection, classification and accurate alignment of up to a million or more related protein sequences [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1869-1875. by Andrew F. Neuwald posted to protein phylogeny multiple high-throughput alignment by davidmam on 2009-11-11 09:07:59 as along with 3 people and 3 groups robfsouza ollieredfernwork carlosjavierna Orengo Group Journal Picks Journal picks iSEEM
	Time ordering of gene coexpression [My Copy] Biostat, Vol. 7, No. 4. (1 October 2006), pp. 569-584. by Xiaoyan Leng, Hans-Georg Müller posted to alignment by olberd on 2009-11-11 07:40:23 as along with 1 person djkt
	Curve alignment by moments [My Copy] Annals of Applied Statistics, Vol. 1, No. 2. (December 2007), pp. 480-501. by Gareth M. James posted to alignment by olberd on 2009-11-11 07:13:46 as
	Nonparametric maximum likelihood estimation of the structural mean of a sample of curves [My Copy] Biometrika, Vol. 92, No. 4. (1 December 2005), pp. 801-820. by Daniel Gervini, Theo Gasser posted to alignment by olberd on 2009-11-11 07:04:44 as
	A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (14 September 2007), e176. by Erika M. Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D. Makova posted to statistics phylogeny indel human chimpanzee bioinformatics alignment by timflutre on 2009-11-10 12:58:06 as along with 4 people and 1 group Iden-J_GluR aprasad djkt cisevol cis-regulatory-evolution
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 10:41:43 as along with 13 people and 1 group dfdong balicea skhadar zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	COMPASS server for remote homology inference. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Ruslan I. Sadreyev, Ming Tang, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 09:56:14 as along with 1 person sebk
	Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets. [My Copy] Journal of molecular biology, Vol. 377, No. 4. (4 April 2008), pp. 1265-1278. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution alignment by martainn on 2009-11-10 09:51:37 as along with 2 people and 1 group barry cdeane structural_bioinformatics
	The alignment between manufacturing and business strategies: its influence on business performance [My Copy] Technovation, Vol. 22, No. 11. (November 2002), pp. 699-705. by H. Sun posted to strategies performance manufacturing influence business alignment by derchao on 2009-11-10 07:25:05 as
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to substitution_matrix blosum alignment by rpetrenko on 2009-11-10 02:28:30 as along with 14 people rshe BioNica maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	Next-generation DNA sequencing. [My Copy] Nature biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to review ngs alignment by cthachuk on 2009-11-09 19:14:02 as along with 46 people and 3 groups Jporci daforerog dchughes hzoltan giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to ngs alignment by cthachuk on 2009-11-09 19:13:06 as along with 36 people and 4 groups jfr hzoltan darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to snv snp ngs alignment by cthachuk on 2009-11-09 19:12:52 as along with 37 people and 2 groups heliopais hzoltan darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to ngs alignment by cthachuk on 2009-11-09 19:12:15 as along with 33 people and 4 groups lianping hzoltan maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Collective alignment of polar filaments by molecular motors [My Copy] The European Physical Journal E: Soft Matter and Biological Physics, Vol. 28, No. 4. (1 April 2009), pp. 401-409. by F. Ziebert, M. Vershinin, S. Gross, I. Aranson posted to proteins motor microtubules journalclub filaments coupling alignment by rodney on 2009-11-09 01:39:37 as
	Structural relationships among proteins with different global topologies and their implications for function annotation strategies [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17377-17382. by Donald Petrey, Markus Fischer, Barry Honig posted to structural alignment by apaydin on 2009-11-08 07:45:55 as along with 5 people and 1 group philcarter carlosjavierna TRHvidsten zwang phoenixzxl Orengo Group Journal Picks
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to pachter good-stuff fsa berkeley alignment by seb1 on 2009-11-07 22:26:02 as along with 18 people and 1 group rdowell timflutre natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin AlexBateman djkt druvus Journal picks
	Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing. [My Copy] Protein engineering, Vol. 16, No. 12. (December 2003), pp. 913-923. by A. Williams, D. R. Gilbert, D. R. Westhead posted to structure fold-evolution alignment by martainn on 2009-11-06 18:50:16 as
	Statistical Tools to Analyze Data Representing a Sample of Curves [My Copy] The Annals of Statistics, Vol. 20, No. 3. (September 1992), pp. 1266-1305. by Alois Kneip, Theo Gasser posted to alignment by olberd on 2009-11-06 13:24:43 as
	EMBOSS: The European Molecular Biology Open Software Suite [My Copy] Trends in Genetics, Vol. 16, No. 6. (1 June 2000), pp. 276-277. by P. Rice posted to software alignment by natstreet on 2009-11-05 10:36:51 as along with 2 people Cortel gennttll
	Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 40. (6 October 2009), pp. 17077-17082. by Gregory E. Sims, Se-Ran R. Jun, Guohong Albert A. Wu, Sung-Hou H. Kim posted to phylogenetics mammals kmer alignment by djkt on 2009-11-04 22:44:52 as along with 7 people wendygarnica Geknitics jsatkosk mkiyer antariksh sujaikumar bpcusack
	Pairwise curve synchronization for functional data [My Copy] Biometrika, Vol. 95, No. 4. (1 December 2008), pp. 875-889. by Rong Tang, Hans-Georg Müller posted to alignment by olberd on 2009-11-04 14:50:08 as
	Time-synchronized clustering of gene expression trajectories [My Copy] Biostat, Vol. 10, No. 1. (1 January 2009), pp. 32-45. by Rong Tang, Hans-Georg Müller posted to alignment by olberd on 2009-11-04 14:45:14 as along with 1 person lptolik
	MISTRAL: a tool for energy-based multiple structural alignment of proteins [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2663-2669. by Cristian Micheletti, Henri Orland posted to software nov09 multiple_structural_alignment energy_minimization alignment algorithm by nickolay on 2009-11-03 21:08:02 as along with 2 people and 1 group jforment reyez Bioinformatics Core Service
	Database-text alignment via structured multilabel classification [My Copy] In IJCAI'07: Proceedings of the 20th international joint conference on Artifical intelligence (2007), pp. 1713-1718. by Benjamin Snyder, Regina Barzilay posted to text_generation probabilistic multilabel context_to_text alignment by sinantie on 2009-11-02 14:04:46 as
	Global Models of Document Structure using Latent Permutations [My Copy] In Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics (June 2009), pp. 371-379. by Harr Chen, S. R. K. Branavan, Regina Barzilay, David R. Karger posted to text_generation segmentation probabilistic mallows alignment by sinantie on 2009-11-02 13:32:56 as
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to alignment by antonkratz on 2009-11-02 09:09:13 as along with 26 people cthachuk hzoltan adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
	MicroRazerS: Rapid alignment of small RNA reads [My Copy] Bioinformatics (29 October 2009), btp601. by Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling posted to rna-seq next_generation alignment by druvus on 2009-11-02 08:11:59 as along with 1 person heliopais

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sequence	279
protein	188
bioinformatics	186
structure	180
software	170
algorithm	163
multiple	113
evolution	110
phylogeny	91
genome	86
method	74
rna	72
msa	58
phylogenetics	55
methods	54
accuracy	52
review	47
algorithms	45
sequencing	42
statistics	42
database	32
tool	31
genomics	30
similarity	29
indel	27
dna	26
ngs	26
tools	26
microtubules	25
prediction	25
face	24
testing	24
clustering	23
registration	23
assembly	22
networks	22
proteins	22
homology	21
tree	21
2008	19
comparison	19
hmm	18
mapping	18
network	18
annotation	17
motif	17
short-read	17
comparative	16
thesis	16
visualization	16
analysis	15
conserved	15
local	15
model	15
molecular	15
seq	15
alignment_accuracy	14
bayesian	14
pathways	14
phylogenomics	14
snp	14
structural	14
2007	13
data-mining	13
databases	13
fold-evolution	13
modeling	13
noncoding	13
ontology	13
proteome	13
gene	12
human	12
kinesin	12
major-proposal	12
multiple_sequence_alignment	12
nlp	12
orientation	12
pair_project	12
proj_assembly	12
short	12
solexa	12
binding	11
comparative_genomics	11
conservation	11
dialogue	11
modelling	11
new_paper	11
nextgen	11
primer	11
read	11
sequence-alignment	11
sequences	11
comps	10
electrostatic	10
genetics	10
programming	10
proteomics	10
scoring	10
secondary	10
validation	10

Tag alignment [at least 200 articles] Export

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