Tag alignments [28 articles] Export

Recent papers classified by the tag alignments.

	Local alignment of two-base encoded DNA sequence [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (09 June 2009), 175. by Nils Homer, Barry Merriman, Stanley Nelson posted to readmapper alignments by darian on 2009-12-07 13:47:40 as along with 3 people lianping jmanning2k n00c
	The Astronomical Orientation of Ancient Greek Temples [My Copy] PLoS ONE, Vol. 4, No. 11. (19 November 2009), e7903. by Alun M. Salt posted to temples sicily religion greek ethnic_identity binomial_test archaeology archaeoastronomy ancient-religion ancient-history alignments by alun on 2009-11-20 14:25:55 as
	Band alignments and defect levels in Si--HfO[sub 2] gate stacks: Oxygen vacancy and Fermi-level pinning [My Copy] Applied Physics Letters, Vol. 92, No. 13. (2008), 132911. by Peter Broqvist, Audrius Alkauskas, Alfredo Pasquarello posted to sio2 si interface hfo2 defect_levels band_gap alignments by JohnnyP on 2009-11-18 09:33:45 as
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to evolution comparative_genomics alignments by roys on 2009-11-09 01:19:43 as along with 13 people and 1 group emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas djkt yylin Neeperando maralena AlexanderPico EisenLab
	Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1147-1159. by Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, et al.Albert J. Driesel, Werner E. G. MÃ¼ller, Thomas Wetter, SÃ¡ndor Suhai posted to sequence rotation_1 genome de_novo assembler alignments alignment by rneches on 2009-10-16 01:45:45 as along with 2 people druvus Ayest
	T-Coffee: A novel method for fast and accurate multiple sequence alignment. [My Copy] Journal of molecular biology, Vol. 302, No. 1. (8 September 2000), pp. 205-217. by C. Notredame, D. G. Higgins, J. Heringa posted to t-coffee alignments by viktor21614 on 2009-08-29 19:09:31 as along with 17 people and 1 group bratwurst tomjad robert laurabailey medic0747 BioNica sebk miguel dayjm indigoviolet ffranca treangen Haggan siebertm adijr marti newton1234 EisenLab
	Clustered alignments of gene-expression time series data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i119-1127. by Adam A. Smith, Aaron Vollrath, Christopher A. Bradfield, Mark Craven posted to alignments clustered data expression gene series time by dswan to the group Bioinformatics on 2009-05-29 09:01:25 as along with 1 person rdiaz
	Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 8. (August 2001), pp. 713-720. by K. Karplus, B. Hu posted to alignments sam-t99 by saunders on 2009-01-09 16:14:46 as
	Using native and syntenically mapped cDNA alignments to improve de novo gene finding [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 637-644. by Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler posted to alignments cdna de finding gene novo synteny by cdiwadkar on 2008-12-24 00:44:14 as along with 4 people druvus natstreet orzenil GustavoLacerda
	How should gaps be treated in parsimony? A comparison of approaches using simulation [My Copy] Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 817-826. by Heath T. Ogden, Michael S. Rosenberg posted to 2007 accuracy alignments dna gaps indels parsimony simulation by treangen on 2008-11-25 11:52:53 as along with 1 person TaqSys
	Alignment of protein structures in the presence of domain motions [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Roberto Mosca, Barbara Brannetti, Thomas Schneider posted to alignments protein structure_calculation by viktor21614 on 2008-10-28 08:41:11 as along with 4 people dimka neils reyez vinithepooh
	The accuracy of several multiple sequence alignment programs for proteins [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (24 October 2006), 471. by Paulo Nuin, Zhouzhi Wang, Elisabeth Tillier posted to alignments protein by viktor21614 on 2008-10-17 13:38:35 as along with 11 people torfinnnome natstreet BioNica daforerog druvus treangen winterschlaefer gjuggler tny plofje rabio
	Twilight zone of protein sequence alignments. [My Copy] Protein Eng, Vol. 12, No. 2. (February 1999), pp. 85-94. by B. Rost posted to alignments protein by viktor21614 on 2008-10-14 21:25:36 as along with 6 people newton1234 cambray chad_davis ffranca sgoetz bicko
	HOMSTRAD: a database of protein structure alignments for homologous families. [My Copy] Protein Sci, Vol. 7, No. 11. (November 1998), pp. 2469-2471. by K. Mizuguchi, C. M. Deane, T. L. Blundell, J. P. Overington posted to alignments database homstrad by viktor21614 on 2008-10-14 21:14:24 as along with 8 people semin bicko chrn massivemayhem medic0747 cdeane sebk newton1234
	Evidence for symmetric chromosomal inversions around the replication origin in bacteria. [My Copy] Genome Biol, Vol. 1, No. 6. (2000) by J. A. Eisen, J. F. Heidelberg, O. White, S. L. Salzberg posted to alignments x by braneyboo on 2008-10-08 19:35:23 as along with 3 people druvus AaronDarling treangen
	Analysis and prediction of functional sub-types from protein sequence alignments [My Copy] Journal of Molecular Biology, Vol. 303, No. 1. (13 October 2000), pp. 61-76. by Sridhar S. Hannenhalli, Robert B. Russell posted to alignments hmm msa prediction by marti on 2008-05-07 18:00:32 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	Matt: Local Flexibility Aids Protein Multiple Structure Alignment. [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008) by Matthew Menke, Bonnie Berger, Lenore Cowen posted to alignments flexibility structure by marti on 2008-01-28 17:04:59 as along with 3 people sebk dimka carlk
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignments blast by marti on 2008-01-24 14:37:42 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	SAD--a normalized structural alignment database: improving sequence-structure alignments. [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2333-2344. by B. Marsden, R. Abagyan posted to alignments sequence structure by marti on 2008-01-24 12:06:17 as along with 1 person dgront
	Pure multiple RNA secondary structure alignments: a progressive profile approach. [My Copy] IEEE/ACM Trans Comput Biol Bioinform, Vol. 1, No. 1. (r 2004), pp. 53-62. by M. Höchsmann, B. Voss, R. Giegerich posted to alignments rna_forester secondary_structure by raylim on 2007-09-11 05:59:50 as along with 1 person emidio_capriotti
	PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W609-612. by M. Suyama, D. Torrents, P. Bork posted to alignments codon pal2nal phylogenetic r1 software by pv on 2007-03-19 12:09:03 as along with 3 people ramonvidal GustavoLacerda bluesky2006
	Statistics of local multiple alignments. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (June 2005) by A. Prakash, M. Tompa posted to alignments local multiple statistics by treangen on 2007-01-31 17:37:59 as along with 2 people AaronDarling timflutre
	The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods. [My Copy] Comput Biol Chem, Vol. 28, No. 5-6. (December 2004), pp. 351-366. by V. A. Simossis, J. Heringa posted to alignments bioinformatics gapped msa multiple positions prediction secondary sequence structure by feenstra on 2006-11-29 09:26:00 as
	Alignment of three-dimensional molecules using an image recognition algorithm [My Copy] Journal of Molecular Graphics and Modelling, Vol. 23, No. 2. (October 2004), pp. 199-209. by Nicola J. Richmond, Peter Willett, Robert D. Clark posted to alignments molecules small structural by dario on 2006-07-11 21:23:02 as along with 2 people daevans superpyrin
	Bioinformatics: an introduction for computer scientists [My Copy] ACM Comput. Surv., Vol. 36, No. 2. (June 2004), pp. 122-158. by Jacques Cohen posted to alignments biological biology cell computer dna dynamic hidden-markov-models microarray modeling molecular parsing phylogenetic programming protein rna sequences simulation structure trees by afragop on 2006-02-25 20:48:45 as along with 17 people and 3 groups imrchen suzhan ruichu MarcoAlvarez druvus pwais neilernst malenitah2 asilva Ayest smithco eweaver bigbossman mmuecke sugarexpletive quianominorleo bozdagd CHISEL Complex_Real_Networks Plant-Tissue-Simulation
	QUASARscoring and ranking of sequencestructure alignments [My Copy] Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4425-4426. by Fabian Birzele, Jan E. Gewehr posted to alignments score sequence-structure by dimka on 2006-01-19 18:39:09 as along with 1 person msierk
	MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. [My Copy] Genome Biol, Vol. 5, No. 12. (2004) by A. M. Moses, D. Y. Chiang, D. A. Pollard, V. N. Iyer, M. B. Eisen posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet to the group EisenLab on 2005-11-13 03:10:05 as along with 4 people and 1 group tuck lusk Garamonfok cisevol cis-regulatory-evolution
	Multiple Sequence Alignment in Phylogenetic Analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (September 2000), pp. 317-330. by A. Phillips posted to alignments and homology pairwise by ziquje on 2005-05-16 16:50:18 as along with 4 people operon nuin aprasad stormybriggs

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protein	5
structure	5
multiple	4
dna	3
gene	3
phylogenetic	3
sequence	3
simulation	3
binding	2
biological	2
biology	2
cell	2
clustered	2
computer	2
conserved	2
data	2
dynamic	2
evolutionary	2
expression	2
factor	2
hidden-markov-models	2
microarray	2
model	2
modeling	2
molecular	2
monkey	2
msa	2
parsing	2
phylogenetics	2
prediction	2
programming	2
rna	2
sequences	2
series	2
site	2
time	2
transcription	2
trees	2
2007	1
accuracy	1
alignment	1
ancient-history	1
ancient-religion	1
archaeoastronomy	1
archaeology	1
assembler	1
band_gap	1
binomial_test	1
bioinformatics	1
blast	1
cdna	1
codon	1
comparative_genomics	1
database	1
de	1
de_novo	1
defect_levels	1
ethnic_identity	1
evolution	1
finding	1
flexibility	1
gapped	1
gaps	1
genome	1
greek	1
hfo2	1
hmm	1
homology	1
homstrad	1
indels	1
interface	1
local	1
molecules	1
novo	1
pairwise	1
pal2nal	1
parsimony	1
positions	1
r1	1
readmapper	1
religion	1
rna_forester	1
rotation_1	1
sam-t99	1
score	1
secondary	1
secondary_structure	1
sequence-structure	1
si	1
sicily	1
sio2	1
small	1
software	1
statistics	1
structural	1
structure_calculation	1
synteny	1
t-coffee	1
temples	1
x	1

Tag alignments [28 articles] Export

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