Tag allosteric [93 articles] Export

Recent papers classified by the tag allosteric.

	Structural Basis for Allosteric Regulation of the Monomeric Allosteric Enzyme Human Glucokinase [My Copy] Structure, Vol. 12, No. 3. (March 2004), pp. 429-438. by Kenji Kamata, Morihiro Mitsuya, Teruyuki Nishimura, Jun-ichi Eiki, Yasufumi Nagata posted to mgcb kinases diabetes allosteric by TimRooney on 2009-11-05 09:32:34 as along with 1 person lna
	Allosteric inhibition of protein tyrosine phosphatase 1B [My Copy] Nature Structural & Molecular Biology, Vol. 11, No. 8. (18 July 2004), pp. 730-737. by Christian Wiesmann, Kenneth J. Barr, Jenny Kung, et al.Jiang Zhu, Daniel A. Erlanson, Wang Shen, Bruce J. Fahr, Min Zhong, Lisa Taylor, Mike Randal, Robert S. McDowell, Stig K. Hansen posted to phosphatases mgcb diabetes allosteric by TimRooney on 2009-11-03 14:31:34 as along with 2 people rklancer klu
	Allosteric inhibitors of Bcr-abl\|[ndash]\|dependent cell proliferation [My Copy] Nature Chemical Biology, Vol. 2, No. 2. (15 January 2006), pp. 95-102. by Francisco J. Adrian, Qiang Ding, Taebo Sim, et al.Anastasia Velentza, Christine Sloan, Yi Liu, Guobao Zhang, Wooyoung Hur, Sheng Ding, Paul Manley, Jurgen Mestan, Doriano Fabbro, Nathanael S. Gray posted to mgcb kinases cancer allosteric by TimRooney on 2009-11-02 18:19:55 as along with 1 person Yanno
	Allosteric Activators of Glucokinase: Potential Role in Diabetes Therapy [My Copy] Science, Vol. 301, No. 5631. (18 July 2003), pp. 370-373. by Joseph Grimsby, Ramakanth Sarabu, Wendy L. Corbett, et al.Nancy-Ellen Haynes, Fred T. Bizzarro, John W. Coffey, Kevin R. Guertin, Darryl W. Hilliard, Robert F. Kester, Paige E. Mahaney, Linda Marcus, Lida Qi, Cheryl L. Spence, John Tengi, Mark A. Magnuson, Chang A. Chu, Mark T. Dvorozniak, Franz M. Matschinsky, Joseph F. Grippo posted to mgcb kinases diabetes allosteric by TimRooney on 2009-11-02 18:17:20 as
	Structures of human MAP kinase kinase 1 (MEK1) and MEK2 describe novel noncompetitive kinase inhibition [My Copy] Nature Structural & Molecular Biology, Vol. 11, No. 12. (14 November 2004), pp. 1192-1197. by Jeffrey F. Ohren, Huifen Chen, Alexander Pavlovsky, et al.Christopher Whitehead, Erli Zhang, Peter Kuffa, Chunhong Yan, Patrick McConnell, Cindy Spessard, Craig Banotai, W. Thomas Mueller, Amy Delaney, Charles Omer, Judith Sebolt-Leopold, David T. Dudley, Iris K. Leung, Cathlin Flamme, Joseph Warmus, Michael Kaufman, Stephen Barrett, Haile Tecle, Charles A. Hasemann posted to mgcb kinases cancer allosteric by TimRooney on 2009-11-02 15:36:50 as along with 1 person dkoveal
	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to flexibility allosteric 2009 by higueruelo on 2009-09-03 14:10:36 as along with 4 people and 2 groups ubcg08l pablocarb okapi barry structural_bioinformatics McCammon
	Allosteric modulation of G-protein coupled receptors [My Copy] European Journal of Pharmaceutical Sciences, Vol. 21, No. 4. (March 2004), pp. 407-420. by Anders A. Jensen, Tracy A. Spalding posted to modulation gpcr allosteric by LaetitiaBigot on 2009-08-26 11:01:03 as
	Development of a Fluorescent-Tagged Kinase Assay System for the Detection and Characterization of Allosteric Kinase Inhibitors [My Copy] Journal of the American Chemical Society, Vol. 131, No. 37. (23 September 2009), pp. 13286-13296. by Jeffrey R. Simard, Matthäus Getlik, Christian Grütter, et al.Vijaykumar Pawar, Sabine Wulfert, Matthias Rabiller, Daniel Rauh posted to allosteric biology detection fluorescence inhibitors kinase by marissalee on 2009-08-09 23:13:34 as along with 1 person jianfengcai
	Dissecting an allosteric switch in caspase-7 using chemical and mutational probes. [My Copy] The Journal of biological chemistry (6 July 2009) by Jeanne A. Hardy, James A. Wells posted to 2009 allosteric by higueruelo on 2009-07-08 16:50:50 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to allosteric correlated_mutation by qluo on 2009-07-08 13:53:09 as along with 20 people and 3 groups mgomes arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	Structural stability of binding sites: Consequences for binding affinity and allosteric effects [My Copy] Proteins: Structure, Function, and Genetics, Vol. 41, No. S4. (2000), pp. 63-71. by Irene Luque, Ernesto Freire posted to allosteric flexibility gibbs by fl on 2009-07-07 11:08:32 as along with 2 people allmensch aqeel
	Allosteric modulation of A2A adenosine receptors by amiloride analogues and sodium ions [My Copy] Biochemical Pharmacology, Vol. 60, No. 5. (1 September 2000), pp. 669-676. by Z. Gao posted to allosteric by arlam on 2009-06-15 23:59:48 as
	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted to allosteric by barry to the group structural_bioinformatics on 2009-05-21 04:06:23 as along with 2 people and 2 groups biblioteca_babel sobolevnrm McCammon baker-group
	Amplification of signaling via cellular allosteric relay and protein disorder. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 17. (28 April 2009), pp. 6887-6888. by B. Ma, R. Nussinov posted to 2009 allosteric disorder by higueruelo on 2009-05-15 14:57:34 as along with 1 person cjryan
	Computational Methods for Predicting Sites of Functionally Important Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Adam D. Schuyler, Heather A. Carlson, Eva L. Feldman posted to 2009 allosteric dynamics by higueruelo on 2009-04-24 17:02:30 as along with 5 people and 1 group skywalkerus02 agrossfield ubcg08l barry sobolevnrm baker-group
	Dynamic Dysfunction in Dihydrofolate Reductase Results from Antifolate Drug Binding: Modulation of Dynamics within a Structural State [My Copy] Structure, Vol. 17, No. 3. (11 March 2009), pp. 386-394. by Randall V. Mauldin, Mary J. Carroll, Andrew L. Lee posted to allosteric nmr protein_ligand by barry to the group structural_bioinformatics on 2009-04-23 03:06:51 as along with 1 person and 1 group ae1054 McCammon
	ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL. [My Copy] J Mol Biol, Vol. 12 (May 1965), pp. 88-118. by J. MONOD, J. WYMAN, J. P. CHANGEUX posted to allosteric model mwc by vladimirov on 2009-04-18 18:23:21 as along with 2 people and 1 group lna lenov compneur
	Ligand-induced global transitions in the catalytic domain of protein kinase A [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3023-3028. by Changbong Hyeon, Patricia A. Jennings, Joseph A. Adams, JosÃ© N. Onuchic posted to allosteric cracking kinetics by anwazo on 2009-04-08 11:16:01 as along with 1 person and 1 group sobolevnrm baker-group
	Direct Observation of the Dynamic Process Underlying Allosteric Signal Transmission [My Copy] Journal of the American Chemical Society, Vol. 131, No. 8. (4 March 2009), pp. 3063-3068. by Sven Brüschweiler, Paul Schanda, Karin Kloiber, et al.Bernhard Brutscher, Georg Kontaxis, Robert Konrat, Martin Tollinger posted to allosteric nmr by barry on 2009-03-31 19:50:42 as along with 1 person and 1 group sobolevnrm baker-group
	Identifying critical non-catalytic residues that modulate protein kinase A activity. [My Copy] PLoS ONE, Vol. 4, No. 3. (2009) by E. J. Kennedy, J. Yang, L. Pillus, S. S. Taylor, G. Ghosh posted to 2009 allosteric kinases mutant-design by higueruelo on 2009-03-13 09:40:31 as
	Quantifying Biological Activity in Chemical Terms: A Pharmacology Primer to Describe Drug Effect [My Copy] ACS Chemical Biology, Vol. 0, No. ja. (0000) by Terry Kenakin posted to affinity allosteric efficacy kinetics orthosteric sar by zimbo1 on 2009-03-10 15:57:16 as
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted to allosteric review by barry to the group structural_bioinformatics on 2009-03-08 02:37:43 as along with 4 people and 2 groups anuragsethi flbarroso sobolevnrm higueruelo McCammon baker-group
	Identification of small molecule inhibitors of the JIP and JNK interaction. [My Copy] The Biochemical journal (25 February 2009) by Tracy Chen, Natasha Kablaoui, Jeremy Little, et al.Sergei Timofeevski, William R. Tschantz, Ping Chen, Junli Feng, Maura Charlton, Robert Stanton, Paul Bauer posted to 2009 allosteric jip jnk kinases ppi sm xf by higueruelo on 2009-03-03 13:18:14 as
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to allosteric networks protein_dynamics by barry to the group structural_bioinformatics on 2009-02-20 19:17:41 as along with 9 people and 2 groups anuragsethi skywalkerus02 sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin baker-group McCammon
	Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages. [My Copy] Genome biology, Vol. 8, No. 5. (25 May 2007), R92. by Antonio Del Sol, Marcos J. Araúzo-Bravo, Dolors Amoros, Ruth Nussinov posted to allosteric networks by barry to the group structural_bioinformatics on 2009-02-09 18:27:22 as along with 3 people and 1 group bicko choonpeng echcram Bioinformatics
	Non-ATP competitive protein kinase inhibitors as anti-tumor therapeutics. [My Copy] Biochemical pharmacology, Vol. 77, No. 10. (15 May 2009), pp. 1561-1571. by Lindsay O. Kirkland, Campbell McInnes posted to 2008 allosteric kinases ppi review by higueruelo on 2009-01-29 15:01:14 as along with 1 person guhjy
	Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 74, No. 1. (2009), pp. 145-154. by Yifei Kong, Martin Karplus posted to allosteric md_simulation pdz by barry on 2009-01-23 03:40:22 as along with 1 person and 1 group jmccammon McCammon
	Label-Free Assay for Thermodynamic Analysis of Protein−Ligand Interactions: A Multivariate Strategy for Allosteric Ligand Screening† [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Jennilee M. Gavina, Mohammad T. Mazhad-Jafari, Giuseppe Melacini, Philip Britz-Mckibbin posted to allosteric binding conformation free gavina08pdf label monitor protein by paulschlesinger on 2008-12-31 00:30:13 as
	Searching for new allosteric sites in enzymes. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 706-715. by J. A. Hardy, J. A. Wells posted to allosteric review by barry on 2008-12-04 00:40:20 as along with 5 people mdimmic apaydin lna aqeel higueruelo
	Allosteric regulation and catalysis emerge via a common route [My Copy] Nature Chemical Biology, Vol. 4, No. 8. (18 July 2008), pp. 474-482. by Nina M. Goodey, Stephen J. Benkovic posted to allosteric review by barry on 2008-12-04 00:20:06 as along with 3 people Diego_Prada pablocarb paulschlesinger
	Application of an allosteric model to describe the interactions among retinol binding protein 4, transthyretin, and small molecule retinol binding protein 4 ligands. [My Copy] Analytical biochemistry (12 October 2008) by Peter Coward, Marion Conn, Jie Tang, Fei Xiong, Anthony Menjares, Jeff D D. Reagan posted to 2008 allosteric ppi rbp4 sm xf by higueruelo on 2008-10-28 11:42:54 as
	An electrostatic network and long-range regulation of Src kinases [My Copy] Protein Sci, Vol. 17, No. 11. (1 November 2008), pp. 1871-1880. by Elif Ozkirimli, Shalini S. Yadav, Todd W. Miller, Carol B. Post posted to allosteric catalytic_domain kinase reguratory_domain by tny on 2008-10-28 11:30:43 as along with 1 person skoddet
	Conservation of μs-ms Enzyme Motions in the Apo- and Substrate-Mimicked State [My Copy] J. Am. Chem. Soc., Vol. 127, No. 25. (29 June 2005), pp. 9167-9176. by H. Beach, R. Cole, M. L. Gill, J. P. Loria posted to allosteric nmr protein_dynamics by barry on 2008-10-27 22:42:57 as along with 1 person and 1 group sobolevnrm baker-group
	Reassessing a sparse energetic network within a single protein domain [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4679-4684. by Celestine N. Chi, Lisa ElfstrÃ¶m, Yao Shi, Tord SnÃ¤ll, Ãke EngstrÃ¶m, Per Jemth posted to allosteric sca by barry on 2008-10-27 22:35:01 as along with 6 people and 1 group choonpeng apaydin cjeans cactus sunhwan sobolevnrm baker-group
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to allosteric protein_dynamics by barry to the group structural_bioinformatics on 2008-10-27 22:23:54 as along with 8 people and 1 group oteri bmduggan xdeupi okapi aqeel raik ruvido zwang McCammon
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to adk allosteric protein_dynamics by barry on 2008-10-27 22:19:21 as along with 12 people and 1 group saravan ahmetbakan xdeupi ubcg08l ruvido aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 yalexeev baker-group
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to allosteric correlated_mutations protein_design sca by barry to the group structural_bioinformatics on 2008-10-17 03:06:04 as along with 7 people and 3 groups sobolevnrm jbhiatt lflorez cactus marck i000 paulschlesinger baker-group McCammon Bioinformatics
	Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 37. (16 September 2008), pp. 13829-13834. by S. M. Sullivan, T. Holyoak posted to allosteric protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2008-10-02 18:34:06 as along with 1 person and 1 group TonyIvetac McCammon
	Allosteric effects of DNA on transcriptional regulators. [My Copy] Nature, Vol. 392, No. 6679. (30 April 1998), pp. 885-888. by J. A. Lefstin, K. R. Yamamoto posted to allosteric dna protein by mijogiffin on 2008-09-16 17:09:37 as
	Cooperativity and biological complexity. [My Copy] Nature chemical biology, Vol. 4, No. 8. (August 2008), pp. 435-439. by Adrian Whitty posted to 2008 allosteric flexibility review by higueruelo on 2008-09-05 16:27:00 as along with 4 people ubcg08l chica paulschlesinger phoenixzxl
	Allostery: an illustrated definition for the 'second secret of life' [My Copy] Trends in biochemical sciences (13 August 2008) by Aron W W. Fenton posted to allosteric review by barry to the group McCammon on 2008-08-29 19:04:37 as along with 1 person and 1 group ruvido structural_bioinformatics
	Allostery and cooperativity revisited [My Copy] Protein Sci, Vol. 17, No. 8. (1 August 2008), pp. 1295-1307. by Qiang Cui, Martin Karplus posted to allosteric dynamics review by tny on 2008-08-20 04:29:42 as along with 3 people sdbneuro ruvido agrossfield
	Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play. [My Copy] J Mol Biol (29 February 2008) by Chung-Jung J. Tsai, Antonio Del Sol, Ruth Nussinov posted to allosteric review by barry to the group McCammon on 2008-07-08 01:25:18 as along with 7 people and 2 groups pablocarb choonpeng cactus sobolevnrm CameronNeylon higueruelo cchang structural_bioinformatics Chang group
	Molecular Dynamics Simulation of the Escherichia coli NikR Protein: Equilibrium Conformational Fluctuations Reveal Interdomain Allosteric Communication Pathways [My Copy] Journal of Molecular Biology, Vol. 378, No. 5. (16 May 2008), pp. 1155-1173. by Michael J. Bradley, Peter T. Chivers, Nathan A. Baker posted to allosteric md_simulation by barry to the group structural_bioinformatics on 2008-04-27 22:02:29 as along with 2 people and 1 group sobolevnrm skoddet baker-group
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to allosteric flexibility md by LamBras on 2008-04-25 14:35:05 as along with 10 people and 4 groups allmensch jrperillaj barry aqeel ruvido cactus sobolevnrm jennifermbui higueruelo jmccammon structural_bioinformatics Bioinformatics baker-group McCammon
	Development of Allosteric Inhibitors of the Interaction of AML1 and CBF for the Treatment of Leukemia. [My Copy] ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 653. by Michael G. Douvas, L. Roudaiya, J. Grembecka, N. Speck, J. H. Bushweller posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:36:05 as
	Development of Small Molecule Inhibitors of the AML1-ETO and CBF -SMMHC Oncoproteins. [My Copy] ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 1591. by Jolanta E. Grembecka, Kristin Graf, Yali Kong, et al.Michael Douvas, Tomasz Cierpicki, Anuradha Illendula, Gwen Baber, Izabela Bielnicka, Liya Roudaia, Nancy A. Speck, Milton L. Brown, John H. Bushweller posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:33:14 as
	Modeling the functional effects of allosteric modulators at pharmacological receptors: an extension of the two-state model of receptor activation. [My Copy] Mol Pharmacol, Vol. 58, No. 6. (December 2000), pp. 1412-1423. by D. A. Hall posted to activation allosteric kinetics by jporternj on 2008-03-28 19:34:30 as along with 1 person lenov
	Coupling of global and local vibrational modes in dynamic allostery of proteins. [My Copy] Biophys J (23 June 2006) by Rhoda J J. Hawkins, Tom C B C. McLeish posted to 2006 allosteric dynamics xf by higueruelo on 2008-03-26 10:30:49 as along with 2 people lna choonpeng
	Coarse-grained model of entropic allostery. [My Copy] Phys Rev Lett, Vol. 93, No. 9. (27 August 2004) by R. J. Hawkins, T. C. McLeish posted to 2004 allosteric flexibility xf by higueruelo on 2008-03-26 10:29:33 as along with 2 people lna ruvido

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protein_dynamics	47
protein_structure	31
review	31
md_simulation	17
kinases	13
xf	13
ppi	10
protein_design	10
2007	9
g_proteins	9
p-loop	9
flexibility	8
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bioinformatics	7
biophysics	7
correlated_mutations	7
nma	7
nmr	7
bioinf_methods	6
contacts	6
correlated_motions	6
networks	6
ntp	6
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2008	5
dynamics	5
hsp70	5
mgcb	5
molecular_motors	5
myosin	5
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sca	5
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pdz	4
protein	4
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dynein	3
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kinetics	3
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protein_evolution	3
protein_ligand	3
protein_protein	3
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sampling	3
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