Tag allostery [at least 200 articles] Export

Recent papers classified by the tag allostery.

	Conformational selection or induced fit: A flux description of reaction mechanism [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 33. (18 August 2009), pp. 13737-13741. by Gordon G. Hammes, Yu-Chu Chang, Terrence G. Oas posted to allostery by okapi on 2009-11-27 09:30:03 as along with 5 people and 1 group chemrahul82 xdeupi anuragsethi pmung barry McCammon
	Dynamic activation of an allosteric regulatory protein [My Copy] Nature, Vol. 462, No. 7271. (19 November 2009), pp. 368-372. by Shiou-Ru Tzeng, Charalampos G. Kalodimos posted to allostery by okapi on 2009-11-20 07:40:28 as
	The role of dynamic conformational ensembles in biomolecular recognition [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (10 October 2009), pp. 789-796. by David D. Boehr, Ruth Nussinov, Peter E. Wright posted to population_shift biomolecular-recognition allostery by skywalkerus02 on 2009-11-14 04:47:05 as along with 3 people higueruelo ubcg08l paulschlesinger
	Reassessing a sparse energetic network within a single protein domain [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4679-4684. by Celestine N. Chi, Lisa Elfström, Yao Shi, Tord Snäll, Åke Engström, Per Jemth posted to allostery by choonpeng on 2009-11-12 03:26:14 as along with 6 people and 1 group barry apaydin cjeans cactus sunhwan sobolevnrm baker-group
	Dynamical networks in tRNA:protein complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6620-6625. by Anurag Sethi, John Eargle, Alexis A. Black, Zaida Luthey-Schulten posted to rna protein network allostery by anuragsethi on 2009-11-09 04:25:50 as along with 4 people and 2 groups jeargle AbnerCYH jmccammon sobolevnrm McCammon baker-group
	Structure-Based Predictive Models for Allosteric Hot Spots [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000531. by Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell posted to allostery by apaydin on 2009-11-08 07:55:47 as along with 3 people and 1 group nickolay klexa barry McCammon
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted to network energyflow dynamics conformational_flexibility allostery by anuragsethi on 2009-11-07 16:33:25 as along with 4 people and 3 groups flbarroso barry sobolevnrm higueruelo structural_bioinformatics McCammon baker-group
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to network allostery by anuragsethi on 2009-11-07 16:30:43 as along with 9 people and 3 groups skywalkerus02 sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin barry baker-group structural_bioinformatics McCammon
	Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3776-3781. by Sichun Yang, Nilesh K. Banavali, BenoÃ®t Roux posted to kinase function freeenergy energylandscape conformational_flexibility allostery by anuragsethi on 2009-11-07 16:30:16 as along with 7 people and 2 groups Diego_Prada bmduggan allmensch guhjy sobolevnrm barry jmccammon baker-group McCammon
	Allosteric Regulation of the Cofactor-Dependent Serine Protease Coagulation Factor VIIa [My Copy] Trends in Cardiovascular Medicine, Vol. 8, No. 8. (November 1998), pp. 350-356. by Wolfram Ruf, Craig D. Dickinson posted to tissuefactor review factorvii allostery by bmduggan on 2009-11-04 20:44:44 as
	Full correlation analysis of conformational protein dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Oliver F. Lange, Helmut Grubmüller posted to principal_component_analysis molecular_dynamics correlation_analysis allostery by jeargle on 2009-11-04 18:59:40 as along with 7 people and 1 group anuragsethi Diego_Prada softsimu barry choonpeng sobolevnrm LamBras baker-group
	The origin of protein interactions and allostery in colocalization. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 983-990. by John Kuriyan, David Eisenberg posted to allostery by yanjiang on 2009-11-03 01:31:55 as along with 6 people and 1 group ynaito cjeans sobolevnrm mingzhi phoenixzxl higueruelo baker-group
	Allosteric receptors after 30 years [My Copy] Rendiconti Lincei, Vol. 17, No. 1. (1 March 2006), pp. 59-96. by Jean-Pierre Changeux, Stuart Edelstein posted to allostery by yanjiang on 2009-11-03 00:26:31 as
	The Chaperonin ATPase Cycle: Mechanism of Allosteric Switching and Movements of Substrate-Binding Domains in GroEL [My Copy] Cell, Vol. 87, No. 2. (October 1996), pp. 241-251. by A. Roseman posted to chaperonin atpase allostery by yanjiang on 2009-11-02 22:37:57 as
	Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 9. (8 September 2009), pp. 2486-2502. by Christopher L. McClendon, Gregory Friedland, David L. Mobley, Homeira Amirkhani, Matthew P. Jacobson posted to protein_dynamics protein-ligand molecular_dynamics_simulations md_simulation drug-discovery binding allostery by jmccammon to the group McCammon on 2009-10-31 19:59:28 as along with 3 people anuragsethi pmung acpan
	Coarse-grained modeling of allosteric regulation in protein receptors [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14253-14258. by Ilya A. Balabin, Weitao Yang, David N. Beratan posted to protein-ligand_interactions multiscale allostery by sobolevnrm on 2009-10-31 00:13:58 as along with 4 people and 1 group pmung jmccammon agrossfield okapi McCammon
	Computation of Conformational Coupling in Allosteric Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000484. by Brian A. Kidd, David Baker, Wendy E. Thomas posted to structure_prediction protein-ligand_interactions allostery by sobolevnrm on 2009-10-31 00:12:01 as along with 6 people and 1 group klexa oteri boris_aguilar bmduggan barry zwang McCammon
	Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion [My Copy] The Journal of Chemical Physics, Vol. 131, No. 7. (2009), 074112. by Joseph N. Stember, Willy Wriggers posted to forcefield enm allostery by anuragsethi on 2009-10-27 17:13:11 as along with 2 people sobolevnrm agrossfield
	Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 6. (1 November 2007), pp. 2312-2334. by Jianyin Shao, Stephen W. Tanner, Nephi Thompson, Thomas E. Cheatham posted to dynamics clustering allostery by anuragsethi on 2009-10-23 07:19:08 as along with 10 people and 3 groups karinaecomp Diego_Prada scampos oteri barry daevans sobolevnrm LamBras allmensch GermanErlenkamp Structural Biology Group TorVergata structural_bioinformatics baker-group
	Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: The myoglobin case [My Copy] Journal of Molecular Graphics and Modelling, Vol. 27, No. 8. (June 2009), pp. 889-899. by Elena Papaleo, Paolo Mereghetti, Piercarlo Fantucci, Rita Grandori, Luca De Gioia posted to pca energylandscape energyflow dynamics correlation conformational_flexibility clustering allostery by anuragsethi on 2009-10-23 07:15:44 as along with 1 person dimka
	Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (17 April 2009), e1000360. by Zheng Yang, Peter Májek, Ivet Bahar posted to groel coarse_grain allostery by barry on 2009-10-23 04:58:26 as along with 2 people and 2 groups jmccammon sobolevnrm McCammon baker-group
	Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages [My Copy] Nature Chemical Biology, Vol. 5, No. 9. (05 July 2009), pp. 680-687. by Gabriela Molina, Andreas Vogt, Ahmet Bakan, et al.Weixiang Dai, Pierre Q. de Oliveira, Wade Znosko, Thomas E. Smithgall, Ivet Bahar, John S. Lazo, Billy W. Day, Michael Tsang posted to mkps allostery by ahmetbakan on 2009-10-22 18:46:37 as
	Sequential ATP-induced allosteric transitions of the cytoplasmic chaperonin containing TCP-1 revealed by EM analysis [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 3. (06 February 2005), pp. 233-237. by Dalia Rivenzon-Segal, Sharon G. Wolf, Liat Shimon, Keith R. Willison, Amnon Horovitz posted to tric cryo-em atp allostery by yanjiang on 2009-10-19 22:30:20 as
	Enzyme millisecond conformational dynamics do not catalyze the chemical step [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17359-17364. by Andrei V. Pisliakov, Jie Cao, Shina C. L. Kamerlin, Arieh Warshel posted to conformational_dynamics allostery by okapi on 2009-10-17 17:57:36 as along with 1 person jjray
	Protein elastic network models and the ranges of cooperativity [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12347-12352. by Lei Yang, Guang Song, Robert L. Jernigan posted to network enm dynamics conformational_flexibility allostery by anuragsethi on 2009-10-16 17:23:01 as along with 4 people Diego_Prada sobolevnrm apaydin edws
	Atomistic View of the Conformational Activation of Src Kinase Using the String Method with Swarms-of-Trajectories [My Copy] Biophysical Journal, Vol. 97, No. 4. (19 August 2009), pp. L8-L10. by Wenxun Gan, Sichun Yang, Benoît Roux posted to freeenergy energylandscape allostery by anuragsethi on 2009-10-16 02:26:57 as along with 1 person and 1 group jmccammon McCammon
	The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways [My Copy] Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung Tsai, Buyong Ma, Ruth Nussinov posted to energylandscape energyflow allostery by anuragsethi on 2009-10-16 02:25:36 as along with 1 person sobolevnrm
	Stabilization of the E* Form Turns Thrombin into an Anticoagulant [My Copy] Journal of Biological Chemistry, Vol. 284, No. 30. (24 July 2009), pp. 20034-20040. by Alaji Bah, Christopher J. Carrell, Zhiwei Chen, Prafull S. Gandhi, Enrico Di Cera posted to thrombin allostery by sobolevnrm on 2009-10-14 12:37:38 as
	Mutagenesis Studies toward Understanding Allostery in Thrombin [My Copy] Biochemistry, Vol. 48, No. 34. (1 September 2009), pp. 8261-8270. by Shabir H. Qureshi, Likui Yang, Chandrashekhara Manithody, Alexei V. Iakhiaev, Alireza R. Rezaie posted to thrombin allostery by sobolevnrm on 2009-10-14 12:28:54 as
	Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: A case study of antibodies [My Copy] BMC Structural Biology, Vol. 7 (17 May 2007), 31. by Ozlem Keskin posted to induced_conformational_changes fluctuations conformational_changes conformational-fluctuations antibodies allostery by skywalkerus02 on 2009-10-10 09:16:56 as along with 4 people and 1 group sobolevnrm aqeel choonpeng medic0747 baker-group
	Perturbation-based Markovian Transmission Model for Probing Allosteric Dynamics of Large Macromolecular Assembling: A Study of GroEL-GroES [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000526. by Hsiao-Mei Lu, Jie Liang posted to multiscale allostery by sobolevnrm on 2009-10-07 12:45:06 as along with 1 person barry
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted to perturbation_method molecular_dynamics md conformational_changes allostery by skywalkerus02 on 2009-10-07 06:29:23 as along with 5 people and 3 groups dimka operon sobolevnrm barry bourby baker-group structural_bioinformatics McCammon
	Computational Methods for Predicting Sites of Functionally Important Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Adam D. Schuyler, Heather A. Carlson, Eva L. Feldman posted to function_of_proteins dynamic_control correlated_motion allostery by skywalkerus02 on 2009-10-06 05:52:11 as along with 5 people and 1 group agrossfield ubcg08l higueruelo barry sobolevnrm baker-group
	Active and inactive state structures of unliganded <I>Lactobacillus casei</I> allosteric <FONT SIZE='-2'>L</FONT>-lactate dehydrogenase [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Kazuhito Arai, Toshihiro Ishimitsu, Shinya Fushinobu, Hiroyuki Uchikoba, Hiroshi Matsuzawa, Hayao Taguchi posted to salt_bridges allostery by skywalkerus02 on 2009-10-02 06:50:37 as
	Analysing the origin of long-range interactions in proteins using lattice models [My Copy] BMC Structural Biology, Vol. 9, No. 1. (29 January 2009), 4. by Orly N. Brik, Ron Unger, Amnon Horovitz posted to lattice_models dynamics allostery by anuragsethi on 2009-09-28 00:37:39 as along with 2 people and 2 groups barry sobolevnrm structural_bioinformatics McCammon
	Allosteric modulation of DNA by small molecules [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 32. (11 August 2009), pp. 13175-13179. by David M. Chenoweth, Peter B. Dervan posted to dna allostery by ubcg08l on 2009-09-23 09:40:41 as along with 1 person semin
	A hierarchy of timescales in protein dynamics is linked to enzyme catalysis [My Copy] Nature (18 November 2007) by Katherine A. Henzler-Wildman, Ming Lei, Vu Thai, Jordan S. Kerns, Martin Karplus, Dorothee Kern posted to struct_decorr proteins protein_dynamics collective_motions allostery active_site by Diego_Prada on 2009-09-19 15:45:21 as along with 9 people and 1 group ruvido tmmurali allmensch cactus sobolevnrm jlh64 RamuAnandakrishnan dmobley chenway baker-group
	Discrete breathers in protein structures [My Copy] Physical Biology, Vol. 5, No. 2. (21 June 2008), 026001. by Francesco Piazza, Yves-Henri Sanejouand posted to networks gnm discrete_breathers allostery active_site by Diego_Prada on 2009-09-17 18:17:02 as along with 2 people sanejouand joseph_x_zhou
	Allosteric regulation and catalysis emerge via a common route [My Copy] Nature Chemical Biology, Vol. 4, No. 8. (18 July 2008), pp. 474-482. by Nina M. Goodey, Stephen J. Benkovic posted to allostery by Diego_Prada on 2009-09-17 17:50:05 as along with 3 people pablocarb barry paulschlesinger
	Mechanism of Acetylcholinesterase Inhibition by Fasciculin: A 5-ns Molecular Dynamics Simulation [My Copy] Journal of the American Chemical Society, Vol. 124, No. 21. (1 May 2002), pp. 6153-6161. by Kaihsu Tai, Tongye Shen, Richard H. Henchman, Yves Bourne, Pascale Marchot, J. Andrew McCammon posted to molecular-dynamics allostery by bmduggan on 2009-09-15 20:59:29 as along with 1 person ffranca
	Cooperativity and biological complexity. [My Copy] Nature chemical biology, Vol. 4, No. 8. (August 2008), pp. 435-439. by Adrian Whitty posted to allostery by ubcg08l on 2009-09-07 14:50:09 as along with 4 people chica higueruelo paulschlesinger phoenixzxl
	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to allostery by ubcg08l on 2009-09-07 14:44:31 as along with 4 people and 2 groups higueruelo pablocarb okapi barry structural_bioinformatics McCammon
	Anatomy of a structural pathway for activation of the catalytic domain of Src kinase Hck [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (1 June 2007), pp. 1096-1112. by Nilesh K. Banavali, Benoît Roux posted to targeted sampling molecular-dynamics interactions allostery by bmduggan on 2009-09-04 15:33:12 as along with 3 people allmensch choonpeng ruvido
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to molecular-dynamics allostery by bmduggan on 2009-09-01 20:52:53 as along with 8 people and 2 groups oteri xdeupi okapi aqeel raik ruvido barry zwang structural_bioinformatics McCammon
	Conformational transition pathway in the allosteric process of calcium-induced recoverin: Molecular dynamics simulations [My Copy] Journal of Computational Chemistry, Vol. 30, No. 7. (2009), pp. 1135-1145. by Ji-Lai Li, Cai-Yun Geng, Yuxiang Bu, Xu-Ri Huang, Chia-Chung Sun posted to molecular-dynamics allostery by bmduggan on 2009-09-01 20:40:43 as
	The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14349-14354. by Ahmet Bakan, Ivet Bahar posted to allostery by okapi on 2009-08-26 12:20:37 as along with 5 people and 1 group ahmetbakan apaydin anuragsethi jmccammon boris_aguilar McCammon
	Characterization of Archaeal Group II Chaperonin-ADP-Metal Fluoride Complexes: IMPLICATIONS THAT GROUP II CHAPERONINS OPERATE AS A "TWO-STROKE ENGINE" [My Copy] J. Biol. Chem., Vol. 280, No. 48. (2 December 2005), pp. 40375-40383. by Ryo Iizuka, Takao Yoshida, Noriyuki Ishii, et al.Tamotsu Zako, Kazunobu Takahashi, Kosuke Maki, Tomonao Inobe, Kunihiro Kuwajima, Masafumi Yohda posted to chaperonin aluminum-fluoride allostery adp by yanjiang on 2009-08-26 00:51:18 as
	The 'sequential allosteric ring' mechanism in the eukaryotic chaperonin-assisted folding of actin and tubulin. [My Copy] The EMBO journal, Vol. 20, No. 15. (1 August 2001), pp. 4065-4075. by O. Llorca, J. Martín-Benito, J. Grantham, et al.M. Ritco-Vonsovici, K. R. Willison, J. L. Carrascosa, J. M. Valpuesta posted to tric chaperonin allostery by yanjiang on 2009-08-25 04:57:49 as
	Nucleotide-dependent conformational states of actin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 31. (4 August 2009), pp. 12723-12728. by Jim Pfaendtner, Davide Branduardi, Michele Parrinello, Thomas D. Pollard, Gregory A. Voth posted to allostery by okapi on 2009-08-22 15:45:38 as along with 3 people and 2 groups pmung anuragsethi barry structural_bioinformatics McCammon
	Ligand binding and internal equilibiums in proteins [My Copy] Biochemistry, Vol. 11, No. 5. (1 February 1972), pp. 864-878. by Gregorio Weber posted to proteins allostery by edws on 2009-08-18 08:11:03 as

Note: You may cite this page as: http://www.citeulike.org/tag/allostery

Result page: 1 2 3 4 5 6 Next

pgdh	42
review	39
molecular_simulation	32
dynamics	31
quasiharmonic_models	27
thrombin	26
protein	22
molecular_dynamics	18
binding	17
nmr	16
protein-ligand	16
structure	16
experiment	15
md_simulation	15
cooperativity	14
bioinformatics	12
cap	12
drug-discovery	12
protein-ligand_interactions	12
correlated_mutations	11
quasiharmonic-models_elastic-network_gnm_nma_pca_etc	11
data	10
alternatives	9
kinetics	9
gpcr	8
kinase	8
protein-domains	8
protein_dynamics	8
coarse_grain	7
model	7
multiscale	7
signaling	7
enhanced_sampling	6
graph_theory	6
hemoglobin	6
network	6
protein_structure	6
models	5
myosin	5
nma	5
nucleic_acids	5
population_shifts	5
usa	5
cap_dna	4
catalysis	4
clip2	4
conformation	4
conformational-fluctuations	4
conformational_flexibility	4
dimerization	4
electrostatics	4
energyflow	4
energylandscape	4
enzyme	4
experimental_methodology	4
freeenergy	4
function	4
hill	4
hpk	4
kinase-a	4
md	4
molecular-dynamics	4
protein-nucleic_acid_interactions	4
ras	4
solvation	4
structural_change	4
xray-crystal-structure	4
active_site	3
chaperone	3
chaperonin	3
clustering	3
conformational_changes	3
dhfr	3
dna	3
enm	3
entropy	3
folding	3
hot_spots	3
kinases	3
mdanalysis	3
molecular_dynamics_simulations	3
motor	3
mutation	3
mwc	3
nicotinic	3
pka	3
protein-interaction	3
protein-protein	3
protein_folding	3
proteins	3
qloop	3
receptor	3
stability	3
systems_biology	3
binding_pockets	2
coarse-grained	2
desensitization	2
lysozyme	2
ribosome	2
signaling_pathways	2

Tag allostery [at least 200 articles] Export

Related Tags