Tag alternative-splicing [72 articles] Export

Recent papers classified by the tag alternative-splicing.

	Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (29 February 2008), e6. by Michał J. Okoniewski, Crispin J. Miller posted to exon bioconductor anova alternative-splicing affymetrix by frohike on 2009-11-21 12:24:56 as along with 8 people daveGerrard floatingpoint guhjy neils giovenko jfr chrisamiller eskay
	Substances that can change alternative splice-site selection. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 3. (June 2008), pp. 483-490. by Chiranthani Sumanasekera, David S. Watt, Stefan Stamm posted to alternative-splicing by dchughes on 2009-11-18 15:45:04 as
	Rapid generation of splicing reporters with pSpliceExpress. [My Copy] Gene, Vol. 427, No. 1-2. (31 December 2008), pp. 104-110. by Shivendra Kishore, Amit Khanna, Stefan Stamm posted to alternative-splicing by dchughes on 2009-11-18 15:40:27 as
	Alternative splicing and disease. [My Copy] Biochimica et biophysica acta, Vol. 1792, No. 1. (January 2009), pp. 14-26. by Jamal Tazi, Nadia Bakkour, Stefan Stamm posted to alternative-splicing by dchughes on 2009-11-18 15:22:09 as
	Genome-wide mapping of alternative splicing in Arabidopsis thaliana [My Copy] Genome Research (26 October 2009) by Sergei A. Filichkin, Henry D. Priest, Scott A. Givan, et al.Rongkun Shen, Douglas W. Bryant, Samuel E. Fox, Weng-Keen Wong, Todd C. Mockler posted to rnaseq ngs alternative-splicing by natstreet on 2009-10-27 08:15:06 as along with 4 people cajunsushi bpcusack kshameer GeeSharpMinor
	RNA-Seq: a revolutionary tool for transcriptomics. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to short-read rna-seq ngs alternative-splicing alignment by cthachuk on 2009-10-23 00:25:56 as along with 42 people and 1 group zufar hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	Genome-wide analyses of alternative splicing in plants: Opportunities and challenges [My Copy] Genome Research, Vol. 18, No. 9. (September 2008), pp. 1381-1392. by W. Brad Barbazuk, Yan Fu, Karen M. Mcginnis posted to alternative-splicing by natstreet on 2009-07-24 09:22:25 as
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted to alternative-splicing tissue_specific sequencing by frohike on 2009-05-18 08:36:03 as along with 22 people and 1 group hzoltan ajbattle stubrown jonilaserson tonamswish fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar Roswell Cancer Crosstalk
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to alternative-splicing tissue_specific by frohike on 2009-05-18 08:35:39 as along with 21 people ongenetics hzoltan torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	The UCSC Known Genes [My Copy] Bioinformatics, Vol. 22, No. 9. (24 February 2006), pp. btl048-1046. by Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler posted to alternative-splicing data-resources by nedwards on 2009-04-18 19:09:05 as along with 5 people manduca wenhan kmdaily antonkratz rschulz
	Diversity of LEF/TCF action in development and disease. [My Copy] Oncogene, Vol. 25, No. 57. (4 December 2006), pp. 7492-7504. by L. Arce, N. N. Yokoyama, M. L. Waterman posted to alternative-splicing cancer n-terminal-peptides proteomics by nedwards on 2009-04-16 18:52:08 as along with 1 person guhjy
	Wnt Activation and Alternative Promoter Repression of LEF1 in Colon Cancer [My Copy] Mol. Cell. Biol., Vol. 26, No. 14. (15 July 2006), pp. 5284-5299. by Tony W. Li, Ju-Hui T. Ting, Noriko N. Yokoyama, Alla Bernstein, Marc van de Wetering, Marian L. Waterman posted to alternative-splicing cancer n-terminal-peptides proteomics by nedwards on 2009-04-16 18:51:54 as
	The Construction of Genome-Based Transcriptional Units [My Copy] OMICS: A Journal of Integrative Biology, Vol. 0, No. 0. (0), pp. 1-10. by Sander R. van Hooff, Jan Koster, Tim Hulsen, et al.Barbera D. C. van Schaik, Marco Roos, Marcel F. van Batenburg, Rogier Versteeg, Antoine H. C. van Kampen posted to alternative-splicing by pengchy on 2009-03-30 05:38:12 as
	Alternative splicing of conserved exons is frequently species-specific in human and mouse. [My Copy] Trends Genet, Vol. 21, No. 2. (February 2005), pp. 73-77. by Q. Pan, M. A. Bakowski, Q. Morris, et al.W. Zhang, B. J. Frey, T. R. Hughes, B. J. Blencowe posted to alternative-splicing species-specific by pengchy on 2009-02-04 03:17:37 as along with 2 people and 1 group kaspermunch antonkratz Bioinformatics
	Studying alternative splicing regulatory networks through partial correlation analysis [My Copy] Genome Biology, Vol. 10, No. 1. (2009), R3. by Liang Chen, Sika Zheng posted to alternative-splicing deep-sequencing network transcriptome by pengchy on 2009-01-11 01:19:04 as along with 3 people cajunsushi lptolik daforerog
	Alternative splicing: regulation without regulators [My Copy] Nat Struct Mol Biol, Vol. 16, No. 1. (January 2009), pp. 13-15. by Brenton R. Graveley posted to alternative-splicing by dchughes on 2009-01-07 13:59:20 as
	Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach [My Copy] Journal of Computational Biology, Vol. 16, No. 1. (2009), pp. 43-66. by Paola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi posted to algorithm alternative-splicing est by pengchy on 2009-01-05 05:02:49 as
	HITS-CLIP yields genome-wide insights into brain alternative RNA processing. [My Copy] Nature, Vol. 456, No. 7221. (27 November 2008), pp. 464-469. by Donny D. Licatalosi, Aldo Mele, John J. Fak, et al.Jernej Ule, Melis Kayikci, Sung Wook W. Chi, Tyson A. Clark, Anthony C. Schweitzer, John E. Blume, Xuning Wang, Jennifer C. Darnell, Robert B. Darnell posted to alternative-splicing by dchughes on 2008-11-27 15:37:57 as along with 6 people gbloeb darnelr asg kieran101 gfliustu rschulz
	Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines [My Copy] Nat Genet, Vol. 40, No. 12. (2 December 2008), pp. 1416-1425. by John C. Castle, Chaolin Zhang, Jyoti K. Shah, et al.Amit V. Kulkarni, Auinash Kalsotra, Thomas A. Cooper, Jason M. Johnson posted to alternative-splicing genome human by pengchy on 2008-11-26 04:16:56 as along with 8 people ericrpaquet fenghezi tanglingfung xingxu asg djkt dchughes rschulz
	A General Definition and Nomenclature for Alternative Splicing Events [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000147. by Michael Sammeth, Sylvain Foissac, Roderic Guigó posted to alternative-splicing annotation eukaryote by treangen on 2008-11-21 11:06:56 as along with 8 people and 1 group malcook madreach sabahkadri Ema bootsy jm12 brianb wutongbin BenosLab
	Identification of Alternative Splicing Markers for Breast Cancer [My Copy] Cancer Res, Vol. 68, No. 22. (15 November 2008), pp. 9525-9531. by Julian P. Venables, Roscoe Klinck, Anne Bramard, et al.Lyna Inkel, Genevieve Dufresne-Martin, Chushin Koh, Julien Gervais-Bird, Elvy Lapointe, Ulrike Froehlich, Mathieu Durand, Daniel Gendron, Jean-Philippe Brosseau, Philippe Thibault, Jean-Francois Lucier, Karine Tremblay, Panagiotis Prinos, Raymund J. Wellinger, Benoit Chabot, Claudine Rancourt, Sherif A. Elela posted to alternative-splicing breast-cancer rt_pcr by frohike on 2008-11-14 16:01:26 as
	Genome-wide detection of alternative splicing in expressed sequences of human genes. [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2850-2859. by B. Modrek, A. Resch, C. Grasso, C. Lee posted to alternative-splicing by dchughes on 2008-09-16 13:06:10 as along with 4 people and 1 group kaspermunch frohike raylim antonkratz Bioinformatics
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to alternative-splicing mapper sequencing software transcript by cthachuk on 2008-09-10 23:22:00 as along with 12 people and 1 group GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown Ema Neeperando SIMR bioinformatics
	Conserved RNA secondary structures promote alternative splicing. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 8. (August 2008), pp. 1463-1469. by P. J. Shepard, K. J. Hertel posted to alternative-splicing by dchughes on 2008-09-02 10:32:57 as along with 1 person aditi9783
	Sircah: a tool for the detection and visualization of alternative transcripts [My Copy] Bioinformatics, Vol. 24, No. 17. (1 September 2008), pp. 1959-1960. by Eoghan D. Harrington, Peer Bork posted to alternative-splicing analysis tool visualization by cthachuk on 2008-08-25 17:47:00 as along with 1 person jmeppley
	Extraction of transcript diversity from scientific literature. [My Copy] PLoS Comput Biol, Vol. 1, No. 1. (June 2005) by P. K. Shah, L. J. Jensen, S. Boué, P. Bork posted to information-extraction alternative-splicing by larsjuhljensen on 2008-03-24 14:45:46 as along with 3 people and 1 group Cortel yas zlu T_lab
	Alternative splicing of Alu exons--two arms are better than one. [My Copy] Nucleic Acids Res (14 February 2008) by Nurit Gal-Mark, Schraga Schwartz, Gil Ast posted to alternative-splicing alu alu-exonisation retrotransposon by dchughes on 2008-03-06 12:29:04 as along with 3 people and 1 group zhouyu andreasapostolides paulcartwright BergmanLab
	Genome-wide analysis of transcript isoform variation in humans [My Copy] Nat Genet, Vol. 40, No. 2. (13 February 2008), pp. 225-231. by Tony Kwan, David Benovoy, Christel Dias, et al.Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J. Hudson, Rob Sladek, Jacek Majewski posted to alternative-splicing transcription by meiklej on 2008-02-07 15:46:56 as along with 11 people ericrpaquet athma cajunsushi inesdesantiago GeeSharpMinor nicholso jo_davies caseybrown stoffreg vplagnol guhjy
	A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing [My Copy] Genome Research, Vol. 17, No. 7. (24 July 2007), pp. 1023-1033. by Rodger B. Voelker, J. Andrew Berglund posted to alternative-splicing evolution introns by rvoelker on 2008-01-16 19:56:44 as along with 5 people and 2 groups jrhill dchughes djkt olympos lilou G4ID Genetics-of-Gambling
	Alternative splicing: current perspectives [My Copy] BioEssays, Vol. 30, No. 1. (2008), pp. 38-47. by Eddo Kim, Amir Goren, Gil Ast posted to alternative-splicing by dchughes on 2007-12-18 13:37:47 as along with 1 person balicea
	Identification of two GTP-independent alternatively spliced forms of tissue transglutaminase in human leukocytes, vascular smooth muscle, and endothelial cells [My Copy] FASEB J., Vol. 21, No. 14. (1 December 2007), pp. 4131-4143. by Thung-S Lai, Yusha Liu, Weidong Li, Charles S. Greenberg posted to alternative-splicing mir tg2 by dchughes on 2007-12-18 13:11:54 as along with 1 person n0122897
	An intronic sequence mutated in flexed-tail mice regulates splicing of Smad5 [My Copy] Mammalian Genome, Vol. 18, No. 12. (December 2007), pp. 852-860. by Shailaja Hegde, Laurie Lenox, Andrew Lariviere, et al.Prashanth Porayette, John Perry, Michele Yon, Robert Paulson posted to alternative-splicing intron splicing by dchughes on 2007-12-16 16:46:08 as
	Alternative trans-splicing: a novel mode of pre-mRNA processing. [My Copy] Biol Cell, Vol. 98, No. 2. (February 2006), pp. 135-140. by T. Horiuchi, T. Aigaki posted to alternative-splicing splicing trans-splicing by dchughes on 2007-12-06 10:53:15 as along with 1 person rklancer
	Use of an exon-trapping vector for the evaluation of splice-site mutations [My Copy] Mammalian Genome, Vol. 18, No. 9. (2007), pp. 670-676. by Boris Schneider, Andrea Koppius, Reinhard Sedlmeier posted to alternative-splicing splicing by dchughes on 2007-11-08 09:51:18 as
	Evolutionary impact of limited splicing fidelity in mammalian genes. [My Copy] Trends Genet, Vol. 23, No. 10. (October 2007), pp. 484-488. by C. Zhang, A. R. Krainer, M. Q. Zhang posted to alternative-splicing splicing by dchughes on 2007-10-30 13:32:14 as along with 1 person bpcusack
	The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome. [My Copy] Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983. by J. Leipzig, P. Pevzner, S. Heber posted to alternative-splicing by dchughes on 2007-09-28 10:49:29 as along with 6 people greg setar Cortel radek nedwards antonkratz
	Differing patterns of selection in alternative and constitutive splice sites [My Copy] Genome Res. (7 June 2007), gr.6347907. by Kavita Garg, Phil Green posted to alternative-splicing by dchughes on 2007-09-17 13:00:32 as along with 3 people and 2 groups jcaddy djkt olympos G4ID Genetics-of-Gambling
	Heritability of alternative splicing in the human genome [My Copy] Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1210-1218. by Tony Kwan, David Benovoy, Christel Dias, et al.Scott Gurd, David Serre, Harry Zuzan, Tyson A. Clark, Anthony Schweitzer, Michelle K. Staples, Hui Wang, John E. Blume, Thomas J. Hudson, Rob Sladek, Jacek Majewski posted to alternative-splicing by dchughes to the group G4ID on 2007-09-17 12:51:04 as along with 8 people and 2 groups xingxu msomel caseybrown nicholso jo_davies ramensky popgen guhjy Bioinformatics Genetics-of-Gambling
	Human X-Box binding protein-1 confers both estrogen independence and antiestrogen resistance in breast cancer cell lines [My Copy] FASEB J. (27 July 2007), fj.06-7990com. by Bianca P. Gomez, Rebecca B. Riggins, Ayesha N. Shajahan, et al.Uwe Klimach, Aifen Wang, Anatasha C. Crawford, Yuelin Zhu, Alan Zwart, Mingyue Wang, Robert Clarke posted to alternative-splicing breast-cancer cancer by nedwards on 2007-09-12 02:29:26 as
	Expression of Mouse Abcg2 mRNA during Hematopoiesis Is Regulated by Alternative Use of Multiple Leader Exons and Promoters [My Copy] J. Biol. Chem., Vol. 281, No. 40. (6 October 2006), pp. 29625-29632. by Yang Zong, Sheng Zhou, Soghra Fatima, Brian P. Sorrentino posted to alternative-splicing by nedwards on 2007-08-29 15:56:44 as
	Functional consequences of new exon acquisition in mammalian chromodomain Y-like (CDYL) genes [My Copy] Trends in Genetics, Vol. 23, No. 9. (September 2007), pp. 427-431. by Xin Li, Jing Liang, Haijing Yu, et al.Bing Su, Chunjie Xiao, Yongfeng Shang, Wen Wang posted to exonisation alternative-splicing alternative-promoters by dchughes to the group Genetics-of-Gambling on 2007-08-20 12:21:35 as along with 1 group G4ID
	Splicing graphs and EST assembly problem [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S181-188. by Steffen Heber, Max Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:19 as along with 5 people nwpuzebra poschm greg setar Cortel
	The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing [My Copy] Molecular Cell, Vol. 27, No. 3. (3 August 2007), pp. 435-448. by Eugene V. Makeyev, Jiangwen Zhang, Monica A. Carrasco, Tom Maniatis posted to alternative-splicing mirna by dchughes on 2007-08-04 11:39:52 as along with 5 people and 3 groups daforerog andersbj sebastien_vigneau maralena bootsy microRNA G4ID Genetics-of-Gambling
	Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements [My Copy] PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e85. by Gene W. Yeo, Eric L. Nostrand, Tiffany Y. Liang posted to alternative-splicing by dchughes to the group Genetics-of-Gambling on 2007-07-28 10:12:58 as along with 1 person and 1 group mdimon G4ID
	Mammalian mRNA Splice-Isoform Selection Is Tightly Controlled [My Copy] Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1079-1087. by Jennifer L. Chisa, David T. Burke posted to alternative-splicing by dchughes to the group Genetics-of-Gambling on 2007-07-26 17:00:10 as along with 1 group G4ID
	Alternative splicing switches on the brain [My Copy] Nature Reviews Neuroscience, Vol. 8, No. 8., pp. 576-576. by Patrick Goymer posted to ptb alternative-splicing by dchughes to the group Genetics-of-Gambling on 2007-07-22 16:11:50 as along with 1 group G4ID
	Cellular signals modulate alternative splicing [My Copy] Journal of Biomedical Science, Vol. 14, No. 4. (16 July 2007), pp. 517-522. by Woan-Yuh Tarn posted to alternative-splicing by dchughes on 2007-07-22 15:54:07 as along with 2 groups G4ID Genetics-of-Gambling
	The impact of alternative splicing in vivo: Mouse models show the way. [My Copy] RNA (11 June 2007) by Tarik Möröy, Florian Heyd posted to alternative-splicing by dchughes to the group G4ID on 2007-07-18 12:44:37 as along with 1 person and 1 group sebastien_vigneau Genetics-of-Gambling
	RNA-binding proteins switch gears to drive alternative splicing in neurons [My Copy] Nat Struct Mol Biol, Vol. 14, No. 7. (July 2007), pp. 577-579. by Paula J. Grabowski posted to alternative-splicing neuron neuroscience splicing by dchughes on 2007-07-06 11:30:52 as along with 1 person and 2 groups N0131826 G4ID Genetics-of-Gambling
	The implications of alternative splicing in the ENCODE protein complement. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5495-5500. by M. L. Tress, P. L. Martelli, A. Frankish, et al.G. A. Reeves, J. J. Wesselink, C. Yeats, P. L. Olason, M. Albrecht, H. Hegyi, A. Giorgetti, D. Raimondo, J. Lagarde, R. A. Laskowski, G. López, M. I. Sadowski, J. D. Watson, P. Fariselli, I. Rossi, A. Nagy, W. Kai, Z. Størling, M. Orsini, Y. Assenov, H. Blankenburg, C. Huthmacher, F. Ramírez, A. Schlicker, F. Denoeud, P. Jones, S. Kerrien, S. Orchard, S. E. Antonarakis, A. Reymond, E. Birney, S. Brunak, R. Casadio, R. Guigo, J. Harrow, H. Hermjakob, D. T. Jones, T. Lengauer, C. A Orengo, L. Patthy, J. M. Thornton, A. Tramontano, A. Valencia posted to alternative-splicing by dchughes on 2007-05-17 10:49:51 as along with 4 people and 4 groups stevanspringer Cortel winterschlaefer antonkratz Bioinformatics FAB-lab G4ID Genetics-of-Gambling

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splicing	20
neuron	9
neuroscience	9
cancer	6
intron-size	6
mirna	6
breast-cancer	5
human	5
est	4
evolution	4
exon	4
rna-seq	4
transcriptome	4
adipose	3
alternative-promoters	3
ampa-receptor	3
bioinformatics	3
brain	3
breast	3
bt474	3
cerebellum	3
colon	3
exonic-splicing-enhancer-elements	3
exonisation	3
heart	3
hme	3
human-genetics	3
human-genome	3
liver	3
lymph-node	3
mb435	3
mcf7	3
muscle	3
nonsense-mediated-mrna-decay	3
ptb	3
sr-proteins	3
t47d	3
testis	3
tissue-specific	3
genome-annotation	2
n-terminal-peptides	2
ngs	2
proteomics	2
sequencing	2
tissue_specific	2
transcription	2
adhesion	1
affymetrix	1
algorithm	1
alu	1
alu-exonisation	1
ampar	1
analysis	1
annotation	1
anova	1
axon-guidance	1
bioconductor	1
cam	1
cell-biology	1
data-resources	1
deep-sequencing	1
development	1
disorder-prediction	1
drosophila	1
dscam	1
eukaryote	1
expression	1
genome	1
glur1	1
information-extraction	1
intrinsically-disordered-protein	1
intron	1
introns	1
mapper	1
mef2	1
microarray	1
minigene	1
mir	1
mrna	1
nuclear-export	1
post	1
psd	1
pure-parsimony	1
retrotransposon	1
rnaseq	1
rt_pcr	1
sap97	1
scaffold	1
short-read	1
software	1
species-specific	1
stringology	1
synapse	1
tg2	1
tissue	1
tool	1
trans-splicing	1
transcript	1
transcription-factor	1
visualization	1

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