Tag amino-acid [46 articles] Export Sort

Recent papers classified by the tag amino-acid.

Hide details

	The COG database: new developments in phylogenetic classification of proteins from complete genomes [My Copy] Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 22-28. by Roman L. Tatusov, Darren A. Natale, Igor V. Garkavtsev, et al.Tatiana A. Tatusova, Uma T. Shankavaram, Bachoti S. Rao, Boris Kiryutin, Michael Y. Galperin, Natalie D. Fedorova, Eugene V. Koonin posted to protein phyloinformatics phylogeny phylogenomics homology genome fungi databases data-mining classification bacteria amino-acid by rvosa to the group FAB-lab on 2009-12-02 12:21:16 as along with 5 people and 1 group aceol thegoose2 operon tharris treangen C. elegans / WormBase
	Peptide-based fluorescent biosensors [My Copy] Chem. Soc. Rev., Vol. 38, No. 12. (2009), pp. 3348-3359. by Elena Pazos, Olalla Vazquez, Jose L. Mascarenas, M. Eugenio Vazquez posted to useful unnaturalaa peptide fluorescence amino-acid by dr_proton on 2009-08-13 15:00:07 as along with 1 person walsoufi
	Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. [My Copy] BMC evolutionary biology, Vol. 6, No. 1. (2006) by T. M. Keane, C. J. Creevey, M. M. Pentony, T. J. Naughton, J. O. Mclnerney posted to amino-acid matrix substitution by niallhaslam on 2009-07-30 10:25:57 as along with 2 people clearbluespring JamesMcInerney
	An α/β-Peptide Helix Bundle with a Pure β3-Amino Acid Core and a Distinctive Quaternary Structure [My Copy] Journal of the American Chemical Society, Vol. 131, No. 29. (29 July 2009), pp. 9860-9861. by Michael W. Giuliano, W. Seth Horne, Samuel H. Gellman posted to amino-acid helix peptide by carlosjavierna on 2009-07-28 23:48:37 as
	Peculiar Stability of Amino Acids and Peptides from a Radical Perspective [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Zachary I. Watts, Christopher J. Easton posted to amino-acid fundamental peptide physorg radical by dr_proton on 2009-07-27 13:08:09 as
	On the distribution of amino acid residues in transmembrane alpha-helix bundles. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 10. (9 May 1995), pp. 4577-4581. by F. A. Samatey, C. Xu, J. L. Popot posted to alpha-helix amino-acid by carlosjavierna on 2009-07-17 03:26:33 as
	Effect of the N1 residue on the stability of the alpha-helix for all 20 amino acids. [My Copy] Protein science : a publication of the Protein Society, Vol. 10, No. 3. (March 2001), pp. 463-470. by D. A. Cochran, S. Penel, A. J. Doig posted to alpha-helix amino-acid by carlosjavierna on 2009-07-17 01:59:09 as
	Hydration Free Energies of Amino Acids: Why Side Chain Analog Data Are Not Enough [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 26. (2 July 2009), pp. 8967-8974. by Gerhard König, Stefan Boresch posted to amino-acid amino-acids free-energy side-chain by carlosjavierna on 2009-07-13 06:10:03 as along with 2 people flbarroso sobolevnrm
	Molecular Dynamics Investigations on the Effect of d Amino Acid Substitution in a Triple-Helix Structure and the Stability of Collagen [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 26. (2 July 2009), pp. 8983-8992. by V. Punitha, Sundar S. Raman, R. Parthasarathi, et al.V. Subramanian, J. Raghava Rao, Balachandran U. Nair, T. Ramasami posted to ala alanine amber amino-acid amino-acids helix molecular-dynamics molecular-dynamics-simulations by carlosjavierna on 2009-07-13 06:05:04 as
	Amino acid polymorphisms altering the glycosylation of IL-2 do not protect from type 1 diabetes in the NOD mouse [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 11236-11240. by Masahito Kamanaka, Dan Rainbow, Karin Schuster-Gossler, et al.Elizabeth E. Eynon, Alexander V. Chervonsky, Linda S. Wicker, Richard A. Flavell posted to amino-acid by carlosjavierna on 2009-07-11 20:23:52 as
	The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages [My Copy] Proceedings of the National Academy of Sciences (7 April 2009) by Yuri I. Wolf, Pavel S. Novichkov, Georgy P. Karev, Eugene V. Koonin, David J. Lipman posted to adaptation amino-acid divergence estimation genetics genome methods models protein rates selection sequence-evolution statistics by rvosa to the group FAB-lab on 2009-04-24 09:19:23 as along with 4 people RamuAnandakrishnan deanmalmgren jjray gjuggler
	Reliabilities of identifying positive selection by the branch-site and the site-prediction methods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6700-6705. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to adaptation amino-acid likelihood methods protein selection substitution-models vertebrates by rvosa to the group FAB-lab on 2009-04-24 09:15:52 as along with 8 people ckenaley sameersoi djkt ramiro2k gjuggler bpcusack atphan gulsacan
	Quantification of Adaptive Evolution of Genes Expressed in Avian Brain and the Population Size Effect on the Efficacy of Selection [My Copy] Mol Biol Evol, Vol. 26, No. 5. (1 May 2009), pp. 1073-1079. by Erik Axelsson, Hans Ellegren posted to amino-acid birds divergence encephalization evolution humans population-genetics protein selection by rvosa to the group FAB-lab on 2009-04-24 09:10:33 as along with 1 person gjuggler
	Catalysts Based on Amino Acids for Asymmetric Reactions in Water [My Copy] Angewandte Chemie International Edition, Vol. 9999, No. 9999. (2009), NA. by Joanna Paradowska, Maciej Stodulski, Jacek Mlynarski posted to amino-acid catalyst by ae1054 on 2009-04-07 16:50:32 as
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:07:34 as along with 1 person mcox
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dna evolution homology methods phylogeny protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:00:54 as along with 1 person Schmidtc
	Protein database searches using compositionally adjusted substitution matrices. [My Copy] FEBS J, Vol. 272, No. 20. (October 2005), pp. 5101-5109. by S. F. Altschul, J. C. Wootton, E. M. Gertz, et al.R. Agarwala, A. Morgulis, A. A. Schäffer, Y. K. Yu posted to amino-acid composition matrix review significance statistical substitution by treangen on 2008-11-22 20:50:22 as along with 1 person kgutwin
	Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome [My Copy] PLoS Genet, Vol. 4, No. 5. (30 May 2008), e1000083. by Adam R. Boyko, Scott H. Williamson, Amit R. Indap, et al.Jeremiah D. Degenhardt, Ryan D. Hernandez, Kirk E. Lohmueller, Mark D. Adams, Steffen Schmidt, John J. Sninsky, Shamil R. Sunyaev, Thomas J. White, Rasmus Nielsen, Andrew G. Clark, Carlos D. Bustamante posted to amino-acid epidemiology evolution genome mutation protein read by Zephyrus to the group R.E.A.D on 2008-11-09 18:36:07 as along with 4 people gjuggler madreach bpcusack aprasad
	Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751. by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa to the group FAB-lab on 2008-08-12 08:00:48 as along with 1 person kndiaye
	Molecular Evolution in the Descent of Man [My Copy] Nature, Vol. 233, No. 5322. (29 October 1971), pp. 604-613. by Morris Goodman, J. O. H. N. Barnabas, Genji Matsuda, William G. Moore posted to amino-acid clock-like divergence diversification evolution mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:20:56 as
	Immunoreactivity and amino acid content of fermented soybean products. [My Copy] Journal of agricultural and food chemistry, Vol. 56, No. 1. (9 January 2008), pp. 99-105. by J. Frias, Y. S. Song, C. Martínez-Villaluenga, E. González de Mejia, C. Vidal-Valverde posted to amino-acid fermented immunoreactivity soybean by annathomson on 2008-05-12 16:20:39 as
	Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641. by John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as along with 3 people chica mloewer Evangelia
	Comparative analyses of codon and amino acid usage in symbiotic island and core genome in nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum. [My Copy] Journal of biomolecular structure & dynamics, Vol. 23, No. 2. (October 2005), pp. 221-232. by S. Das, A. Pan, S. Paul, C. Dutta posted to amino-acid bradyrhizobium-japonicum codon-usage usage by Saby2000 on 2008-04-19 02:42:07 as
	Analysis of the residue-residue coevolution network and the functionally important residues in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Byung-Chul Lee, Keunwan Park, Dongsup Kim posted to bioinformatics coevolution function network amino-acid residue by neils on 2008-04-10 13:28:46 as along with 7 people and 2 groups barry sobolevnrm mingzhi penpen926 scienbox wilbur friendpine structural_bioinformatics baker-group
	The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 902-911. by Yu Yi-Kuo, F. Altschul posted to amino-acid composition matrix method substitution by treangen on 2008-02-04 15:53:03 as
	Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom [My Copy] BMC Evolutionary Biology, Vol. 7 (09 August 2007), 134. by Eiko E. Kuramae, Vincent Robert, Carlos Echavarri-Erasun, Teun Boekhout posted to algorithms amino-acid data-mining fungi methods phylogenomics phylogeny phyloinformatics proteins by rvosa to the group FAB-lab on 2008-02-01 11:30:06 as along with 2 people and 1 group echinotrix stajich Mycology
	Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus. [My Copy] Gene, Vol. 383 (15 November 2006), pp. 24-32. by R. A. Cramer, J. E. Stajich, Y. Yamanaka, F. S. Dietrich, W. J. Steinbach, J. R. Perfect posted to amino-acid data-mining dna methods phylogenomics proteins by rvosa to the group FAB-lab on 2008-02-01 11:22:31 as along with 1 person stajich
	New Approaches to Phylogenetic Tree Search and Their Application to Large Numbers of Protein Alignments [My Copy] Systematic Biology, Vol. 56, No. 5. (2007), pp. 727-740. by Simon Whelan posted to algorithms amino-acid methods phylogeny proteins software by rvosa to the group FAB-lab on 2008-02-01 11:11:01 as along with 1 person stajich
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted to algorithms amino-acid animals data-mining genetics genome hominidae homology humans mammals methods phylogenomics primates proteins rna sequence vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:04:06 as along with 18 people and 2 groups bpcusack antonkratz jo_davies tmmurali balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab Mycology
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to algorithms alignment amino-acid data-mining dna methods phylogeny phyloinformatics sequence by rvosa to the group FAB-lab on 2008-02-01 11:01:06 as along with 9 people treangen druvus aprasad BioNica stajich cjeans zwang lilou mailund
	Statistical analysis of the physical properties of the 20 naturally occurring amino acids [My Copy] Journal of Protein Chemistry, Vol. 4, No. 1. (1 February 1985), pp. 23-55. by Akinori Kidera, Yasuo Konishi, Masahito Oka, Tatsuo Ooi, Harold A. Scheraga posted to statistics amino-acid sequence protein by neils on 2007-12-11 06:54:52 as along with 1 person stharward
	Are knowledge-based potentials derived from protein structure sets discriminative with respect to amino acid types? [My Copy] Proteins: Structure, Function, and Genetics, Vol. 31, No. 3. (1998), pp. 225-246. by Shamil R. Sunyaev, Frank Eisenhaber, Patrick Argos, Eugene N. Kuznetsov, Vladimir G. Tumanyan posted to amino-acid potential protein statistics structure by Evangelia on 2007-10-02 10:10:09 as
	The Problem of Amino Acid Complementarity and Antisense Peptides [My Copy] Current Protein and Peptide Science, Vol. 5, No. 6., 507. by Ignacy Z. Siemion, Marek Cebrat, Alicja Kluczyk posted to amino-acid peptides properties by Evangelia on 2007-10-01 15:34:57 as
	Amino acid uptake: a widespread ability among boreal forest plants [My Copy] Ecology Letters, Vol. 4, No. 5. (2001), pp. 434-438. by Jorgen Persson, Torgny Nasholm posted to 2007-69 amino-acid methods review by agallet on 2007-05-16 19:41:38 as
	Resource-based niches provide a basis for plant species diversity and dominance in arctic tundra. [My Copy] Nature, Vol. 415, No. 6867. (3 January 2002), pp. 68-71. by R. B. McKane, L. C. Johnson, G. R. Shaver, et al.K. J. Nadelhoffer, E. B. Rastetter, B. Fry, A. E. Giblin, K. Kielland, B. L. Kwiatkowski, J. A. Laundre, G. Murray posted to 15n 2007-59 amino-acid mixing_model niches tundra by agallet on 2007-05-16 19:08:25 as along with 1 person 6832364
	Nitrogen acquisition from inorganic and organic sources by boreal forest plants in the field [My Copy] Oecologia, Vol. 137, No. 2. (21 October 2003), pp. 252-257. by Jörgen Persson, Peter Högberg, Alf Ekblad, Monan Högberg, Anders Nordgren, Torgny Näsholm posted to 13c 15n 2007-56 amino-acid boreal_forest organic_nitrogen by agallet on 2007-05-16 19:03:41 as along with 1 person upupa1957
	Rapid uptake of 15N-ammonium and glycine-13C, 15N by arbuscular and ericoid mycorrhizal plants native to a Northern California coastal pygmy forest [My Copy] Soil Biology and Biochemistry, Vol. 39, No. 5. (May 2007), pp. 1078-1086. by Kai C. Rains, Caroline S. Bledsoe posted to 13c 15n 2007-53 amino-acid mycorrhizae uptake by agallet on 2007-05-16 18:58:38 as
	Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions [My Copy] BMC Genomics, Vol. 7 (05 December 2006), 307. by Fredj Tekaia, Edouard Yeramian posted to amino-acid evolution by brant on 2006-12-13 14:42:54 as along with 1 person and 1 group michaelbarton EisenLab
	Where did the BLOSUM62 alignment score matrix come from? [My Copy] Nature biotechnology, Vol. 22, No. 8. (August 2004), pp. 1035-1036. by Sean R. Eddy posted to amino-acid primer sequence-alignment substitution-matrix by xiaobeizhao on 2006-10-08 22:31:06 as along with 7 people and 1 group svozil mcbla ziquje bicko gurkanbebek rabio reyez Bioinformatics
	Organic and inorganic nitrogen nutrition of western red cedar, western hemlock and salal in mineral N-limited cedar-hemlock forests. [My Copy] Oecologia, Vol. 141, No. 3. (November 2004), pp. 468-476. by J. N. Bennett, C. E. Prescott posted to 2006-66 amino-acid isotope mycorrhizae protein tannins by agallet on 2006-09-15 19:17:06 as
	Amino-acid influx at the soil-root interface of Zea mays L. and its implications in the rhizosphere [My Copy] Plant and Soil (Historical Archive), Vol. 163, No. 1. (June 1994), pp. 1-12. by D. Jones, P. Darrah posted to 2005-54 amino-acid exudates rhizosphere by agallet on 2005-05-27 14:04:35 as
	Soil Amino Acid Utilization among Species of the Cyperaceae: Plant and Soil Processes [My Copy] Ecology, Vol. 80, No. 7. (1999), pp. 2408-2419. by Theodore K. Raab, David A. Lipson, Russell K. Monson posted to 2005-52 amino-acid plant sorption by agallet on 2005-05-06 18:31:48 as
	Control of amino acid mineralization and microbial metabolism by temperature [My Copy] Soil Biology and Biochemistry, Vol. 33, No. 7-8. (June 2001), pp. 1137-1140. by L. Vinolas, V. Vallejo, D. Jones posted to amino-acid mineralization temperature by agallet on 2005-05-06 18:26:42 as
	Rapid intrinsic rates of amino acid biodegradation in soils are unaffected by agricultural management strategy [My Copy] Soil Biology and Biochemistry, Vol. 37, No. 7. (July 2005), pp. 1267-1275. by D. Jones, S. Kemmitt, D. Wright, S. Cuttle, R. Bol, A. Edwards posted to 2005-50 agricultutal_soils amino-acid by agallet on 2005-05-06 18:25:17 as
	Interference by amino acids during the determination of 15N ammonium in soil [My Copy] Soil Biology and Biochemistry, Vol. In Press, Corrected Proof by Anke Herrmann, Victoria B. Willett, Elizabeth A. Stockdale, David L. Jones posted to amino-acid methods by agallet on 2005-05-06 18:23:49 as
	Kinetics of amino acid uptake by ectomycorrhizal roots [My Copy] Plant, Cell & Environment, Vol. 22, No. 2. (February 1999), pp. 179-187. by T. Wallenda, D. J. Read posted to 2005-44 amino-acid ectomycorrhiza uptake by agallet on 2005-05-06 17:19:20 as along with 1 person Zulfatrimusha

Note: You may cite this page as: http://www.citeulike.org/tag/amino-acid

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

protein	24
methods	20
data-mining	14
evolution	13
phylogenomics	12
phylogeny	12
dna	10
genome	10
sequence	10
algorithms	8
alignment	8
homology	8
phyloinformatics	8
selection	8
divergence	7
proteins	7
adaptation	6
databases	6
genetics	6
humans	6
models	6
mammals	5
primates	5
rates	5
sequence-evolution	5
animals	4
encephalization	4
fungi	4
hominidae	4
likelihood	4
statistics	4
vertebrates	4
15n	3
clock-like	3
matrix	3
peptide	3
software	3
substitution	3
13c	2
alpha-helix	2
amino-acids	2
anthropology	2
bacteria	2
birds	2
classification	2
comparative	2
composition	2
dbhack1	2
epidemiology	2
estimation	2
helix	2
mutation	2
mycorrhizae	2
population-genetics	2
proteomics	2
ratio-test	2
read	2
review	2
rna	2
structure	2
substitution-models	2
uptake	2
2005-52	1
2006-66	1
2007-59	1
agricultutal_soils	1
analysis	1
arginine	1
bioinformatics	1
bradyrhizobium-japonicum	1
catalyst	1
chemosensory-behavior	1
chemotaxis	1
codon-usage	1
database	1
feeding	1
fluorescence	1
food-web	1
function	1
immunoreactivity	1
internet	1
isotope	1
motifs	1
odor-plume	1
peptides	1
phosphorylation	1
physorg	1
plant	1
radical	1
rhizosphere	1
signal	1
sorption	1
soybean	1
statistical	1
substitution-matrix	1
tannins	1
temperature	1
tundra	1
unnaturalaa	1
usage	1

Tag amino-acid [46 articles] Export Sort

Related Tags