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	Computational method to reduce the search space for directed protein evolution [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 7. (27 March 2001), pp. 3778-3783. by Christopher A. Voigt, Stephen L. Mayo, Frances H. Arnold, Zhen-Gang Wang posted to protein-structure directed-evolution computational amino-acids by stharward on 2009-12-17 21:31:07 as along with 3 people and 1 group msuarezdiez betainverse nknii TCR_Signaling
	Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids [My Copy] Journal of Computational Chemistry, Vol. 30, No. 4. (2009), pp. 589-600. by Wenbo Yu, Lei Liang, Zijing Lin, Sanliang Ling, Maciej Haranczyk, Maciej Gutowski posted to protonated dft conformers amino-acids by zfekete on 2009-11-06 12:25:47 as along with 2 people Lombardo_7 middledomain
	Statistical analysis of the physical properties of the 20 naturally occurring amino acids [My Copy] Journal of Protein Chemistry, Vol. 4, No. 1. (1 February 1985), pp. 23-55. by Akinori Kidera, Yasuo Konishi, Masahito Oka, Tatsuo Ooi, Harold A. Scheraga posted to statistical-analysis pca cluster-analysis amino-acids by stharward on 2009-10-20 20:39:37 as along with 1 person neils
	Statistical Methods and Insights for Protein and DNA Sequences [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 20, No. 1. (1991), pp. 175-203. by S. Karlin, P. Bucher, V. Brendel, S. F. Altschul posted to sequence-pattern-recognition sequence-alignment review amino-acids by stharward on 2009-10-19 14:43:02 as
	The classification of amino acid conservation [My Copy] Journal of Theoretical Biology, Vol. 119, No. 2. (21 March 1986), pp. 205-218. by W. R. Taylor posted to sequence-alignment motif-identification computational amino-acids by stharward on 2009-10-19 13:49:15 as
	What Amino Acid Properties Affect Protein Evolution? [My Copy] Journal of Molecular Evolution, Vol. 47, No. 5. (24 November 1998), pp. 557-564. by Xuhua Xia, Wen-Hsiung Li posted to sequence-stability amino-acids by stharward on 2009-10-17 20:45:40 as
	Mutation matrices and physical-chemical properties: Correlations and implications [My Copy] Proteins: Structure, Function, and Genetics, Vol. 27, No. 3. (1997), pp. 336-344. by Jeffrey M. Koshi, Richard A. Goldstein posted to sequence-stability protein-folding amino-acids by stharward on 2009-10-17 20:37:55 as
	From one amino acid to another: tRNA-dependent amino acid biosynthesis [My Copy] Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1813-1825. by Kelly Sheppard, Jing Yuan, Michael J. Hohn, Brian Jester, Kevin M. Devine, Dieter Soll posted to review general amino-acids by carlosjavierna on 2009-09-07 05:00:42 as
	A mechanism for the association of amino acids with their codons and the origin of the genetic code [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 12. (22 March 2005), pp. 4442-4447. by Shelley D. Copley, Eric Smith, Harold J. Morowitz posted to genetic_code codon amino-acids by carlosjavierna on 2009-09-05 18:12:08 as along with 1 person and 2 groups jwm Radiation_Damage Stressosome
	Effect of the N2 residue on the stability of the alpha-helix for all 20 amino acids. [My Copy] Protein science : a publication of the Protein Society, Vol. 10, No. 7. (July 2001), pp. 1305-1311. by D. A. Cochran, A. J. Doig posted to alpha-helix amino-acids general by carlosjavierna on 2009-08-08 04:05:32 as
	Use of Amino Acid Composition to Predict Ligand-Binding Sites [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 2. (1 March 2007), pp. 400-406. by Shinji Soga, Hiroki Shirai, Masato Kobori, Noriaki Hirayama posted to amino-acids binding-site-analysis p1 protein protein-ligand structure surface by nickolay on 2009-08-06 19:01:15 as along with 1 person iaolier
	Propensities of polar and aromatic amino acids in noncanonical interactions: nonbonded contacts analysis of protein-ligand complexes in crystal structures. [My Copy] Journal of medicinal chemistry, Vol. 50, No. 6. (22 March 2007), pp. 1189-1196. by Yumi N. Imai, Yoshihisa Inoue, Yoshio Yamamoto posted to amino-acids aromatics p1 props protein protein-ligand structure by nickolay on 2009-08-06 17:15:31 as
	Understanding the Functional Roles of Amino Acid Residues in Enzyme Catalysis [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 560-577. by Gemma L. Holliday, John B. O. Mitchell, Janet M. Thornton posted to amino-acids catalysis enzyme function p1 props protein residue-conservation by nickolay on 2009-08-06 16:36:41 as along with 5 people and 1 group krapnik bdessailly carlosjavierna ucbcjbm pablocarb Orengo Group Journal Picks
	Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 10. (12 March 2009), pp. 1905-1912. by Adeyemi A. Adesokan, R. B. Gerber posted to amino-acids dimers by carlosjavierna on 2009-07-23 16:07:30 as
	Nonnatural Amino Acids for Site-Specific Protein Conjugation [My Copy] Bioconjugate Chemistry, Vol. 20, No. 7. (15 July 2009), pp. 1281-1295. by Albert J. de Graaf, Marlous Kooijman, Wim E. Hennink, Enrico Mastrobattista posted to amino-acids review by carlosjavierna on 2009-07-20 03:55:14 as along with 1 person frankfli
	Activity, splice variants, conserved peptide motifs and phylogeny of two new alpha 1,3-fucosyltransferase families (FUT10 and FUT11) [My Copy] J. Biol. Chem. (16 December 2008), M809312200. by Rosella Mollicone, Stuart E. H. Moore, Nicolai Bovin, et al.Marcela Garcia-Rosasco, Jean Candelier, Ivan Martinez-Duncker, Rafael Oriol posted to amino-acids by carlosjavierna on 2009-07-16 07:20:42 as
	ErbB4 splice variants Cyt1 and Cyt2 differ by sixteen amino acids and exert opposing effects on the mammary epithelium in vivo [My Copy] Mol. Cell. Biol. (13 July 2009), MCB.01705-08. by Rebecca S. Muraoka-Cook, Melissa A. Sandahl, Karen E. Strunk, et al.Leah C. Miraglia, Carty Husted, Debra M. Hunter, Klaus Elenius, Lewis A. Chodosh, H. Shelton Earp posted to amino-acids by carlosjavierna on 2009-07-14 18:54:29 as
	Hydration Free Energies of Amino Acids: Why Side Chain Analog Data Are Not Enough [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 26. (2 July 2009), pp. 8967-8974. by Gerhard König, Stefan Boresch posted to amino-acid amino-acids free-energy side-chain by carlosjavierna on 2009-07-13 06:10:03 as along with 2 people flbarroso sobolevnrm
	Molecular Dynamics Investigations on the Effect of d Amino Acid Substitution in a Triple-Helix Structure and the Stability of Collagen [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 26. (2 July 2009), pp. 8983-8992. by V. Punitha, Sundar S. Raman, R. Parthasarathi, et al.V. Subramanian, J. Raghava Rao, Balachandran U. Nair, T. Ramasami posted to ala alanine amber amino-acid amino-acids helix molecular-dynamics molecular-dynamics-simulations by carlosjavierna on 2009-07-13 06:05:04 as
	Proton Affinities of Some Amino Acid Side Chains in a Restricted Environment [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 28. (16 July 2009), pp. 9570-9576. by T. G. Abi, Amit Anand, Srabani Taraphder posted to amino-acids side-chain by carlosjavierna on 2009-07-11 14:57:38 as
	Annotating Enzymes of Uncertain Function: The Deacylation of d-Amino Acids by Members of the Amidohydrolase Superfamily, [My Copy] Biochemistry, Vol. 48, No. 27. (14 July 2009), pp. 6469-6481. by Jennifer A. Cummings, Alexander A. Fedorov, Chengfu Xu, et al.Shoshana Brown, Elena Fedorov, Patricia C. Babbitt, Steven C. Almo, Frank M. Raushel posted to amino-acids proteinas proteins by carlosjavierna on 2009-07-08 16:31:30 as
	Technetium-binding in labelled HYNIC-peptide conjugates: Role of coordinating amino acids [My Copy] Journal of Inorganic Biochemistry, Vol. 103, No. 7. (04 July 2009), pp. 971-977. by M. Bashir-Uddin Surfraz, Robert King, Stephen J. Mather, Stefano Biagini, Philip J. Blower posted to amino-acids by carlosjavierna on 2009-07-07 04:12:55 as
	Helix formation in ε-amino acid oligomers [My Copy] Journal of Molecular Structure: THEOCHEM, Vol. 907, No. 1-3. (15 August 2009), pp. 109-114. by Peter Schramm, Hans-Jörg Hofmann posted to amino-acids by carlosjavierna on 2009-07-07 03:41:57 as
	Preparation of Photoactivable Amino Acid Derivatives [My Copy] The Journal of Organic Chemistry, Vol. 74, No. 12. (19 June 2009), pp. 4519-4524. by Jean-Luc Débieux, Christian G. Bochet posted to amino-acids by carlosjavierna on 2009-06-13 15:56:29 as
	Amino Acid-Protecting Groups [My Copy] Chemical Reviews, Vol. 109, No. 6. (10 June 2009), pp. 2455-2504. by Albert Isidro-Llobet, Mercedes Álvarez, Fernando Albericio posted to amino-acids by carlosjavierna on 2009-06-12 15:40:08 as
	Microsolvation of Cysteine: A Density Functional Theory Study [My Copy] The Journal of Physical Chemistry A, Vol. 0, No. 0. (0000) by Steven M. Bachrach, Thuy T. Nguyen, Dustin W. Demoin posted to amino-acids microsolvation by Gershom on 2009-05-03 04:41:41 as
	Representative Amino Acid Side Chain Interactions in Proteins. A Comparison of Highly Accurate Correlated ab Initio Quantum Chemical and Empirical Potential Procedures [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Karel Berka, Roman Laskowski, Kevin E. Riley, Pavel Hobza, Jiří Vondrášek posted to amino-acids hobza molecular-modeling by carlosjavierna on 2009-04-19 16:22:53 as along with 1 person krapnik
	Modeling of the Chiroptical Response of Chiral Amino Acids in Solution Using Explicit Solvation and Molecular Dynamics [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 4. (14 April 2009), pp. 1051-1060. by Matthew D. Kundrat, Jochen Autschbach posted to amino-acids molecular-dynamics-simulations by carlosjavierna on 2009-04-19 15:50:08 as
	Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment. [My Copy] Bioinformatics (Oxford, England) (7 April 2009) by Eric L L. Peterson, Jané Kondev, Julie A A. Theriot, Rob Phillips posted to algorithms amino-acids clustering isis metrics protein structure by behindtherabbit on 2009-04-10 17:25:22 as along with 1 person reyez
	Single Amino Acid Alterations in a Highly Conserved Central Region of Vesicular Stomatitis Virus N Protein Differentially Affects the Viral Nucleocapsid Template Functions [My Copy] J. Virol. (25 March 2009), JVI.02289-08. by Debasis Nayak, Debasis Panda, Subash C. Das, Ming Luo, Asit K. Pattnaik posted to amino-acids by carlosjavierna on 2009-04-03 20:14:09 as
	Gas-Phase IR Spectroscopy of Deprotonated Amino Acids [My Copy] Journal of the American Chemical Society, Vol. 131, No. 12. (1 April 2009), pp. 4310-4319. by Jos Oomens, Jeffrey D. Steill, Britta Redlich posted to amino-acids ser trp tyr by carlosjavierna on 2009-03-30 14:25:43 as
	Ion-Specific Interactions between Halides and Basic Amino Acids in Water† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 10. (12 March 2009), pp. 1969-1975. by Jan Heyda, Tomáš Hrobárik, Pavel Jungwirth posted to amino-acids molecular-dynamics molecular-dynamics-simulations molecular-modeling by carlosjavierna on 2009-03-11 03:09:59 as
	Effect of Mutation of Carboxyl Side-Chain Amino Acids Near the Heme on the Midpoint Potentials and Ligand Binding Constants of Nitrophorin 2 and Its NO, Histamine, and Imidazole Complexes [My Copy] Journal of the American Chemical Society, Vol. 131, No. 6. (18 February 2009), pp. 2313-2327. by Robert E. Berry, Maxim N. Shokhirev, Arthur Y. Ho, et al.Fei Yang, Tatiana K. Shokhireva, Hongjun Zhang, Andrzej Weichsel, William R. Montfort, Ann F. Walker posted to amino-acids mutation side-chain side-chain-amino-acids by carlosjavierna on 2009-02-20 04:47:55 as
	Plant biology: Mutual sanctions [My Copy] Nature, Vol. 422, No. 6933. (17 April 2003), pp. 672-674. by Janet Sprent posted to amino-acids bacteria bacteroid commentary n-fixation nitrogenase rhizobia symbiosis by behindtherabbit on 2009-02-07 19:19:38 as
	Amino-acid cycling drives nitrogen fixation in the legume-Rhizobium symbiosis [My Copy] Nature, Vol. 422, No. 6933. (17 April 2003), pp. 722-726. by E. M. Lodwig, A. H. F. Hosie, A. Bourdes, et al.K. Findlay, D. Allaway, R. Karunakaran, J. A. Downie, P. S. Poole posted to amino-acids bacteroid legume n-fixation nodules pea rhizobia symbiosis by behindtherabbit on 2009-02-07 19:16:38 as
	Selenocysteine: the 21st amino acid [My Copy] Molecular Microbiology, Vol. 5, No. 3. (1991), pp. 515-520. by A. Bock, K. Forchhammer, J. Heider, et al.W. Leinfelder, G. Sawers, B. Veprek, F. Zinoni posted to amino-acids rareaa review selenocysteine by rsandie on 2007-12-11 21:10:20 as
	Structural and functional investigation of a putative archaeal selenocysteine synthase. [My Copy] Biochemistry, Vol. 44, No. 40. (11 October 2005), pp. 13315-13327. by J. T. Kaiser, K. Gromadski, M. Rother, H. Engelhardt, M. V. Rodnina, M. C. Wahl posted to amino-acids archaea pathways rareaa structure selenocysteine by rsandie on 2007-12-11 20:10:30 as
	Dynamic evolution of selenocysteine utilization in bacteria: a balance between selenoprotein loss and evolution of selenocysteine from redox-active cysteine residues [My Copy] Genome Biology, Vol. 7 (20 October 2006), R94. by Yan Zhang, Hector Romero, Gustavo Salinas, Vadim N. Gladyshev posted to amino-acids bacteria evolution rareaa selenocysteine by rsandie on 2007-12-11 20:06:07 as
	An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2580-2589. by Yan Zhang, Vadim N. Gladyshev posted to algorithms amino-acids bacteria rareaa selenocysteine by rsandie on 2007-12-11 20:04:24 as
	On the Way to Protein Alphabet: Informational Classification of Amino Acids in Comparison to Other Classifications [My Copy] (30 Nov 2005) by A. N. Gorban, M. Kudryashev, T. Popova posted to amino-acids classifications proteomes by Scis0000002 on 2007-10-30 13:39:51 as along with 1 person proportional
	Amino acid quantitative structure property relationship database: a web-based platform for quantitative investigations of amino acids [My Copy] Protein Engineering, Design and Selection, Vol. 20, No. 7. (1 July 2007), pp. 347-351. by Yi Lu, Blazej Bulka, Marie Desjardins, Stephen J. Freeland posted to amino-acids database property structure web-based by nickolay on 2007-08-22 16:37:46 as
	Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach [My Copy] BMC Bioinformatics, Vol. 8 (28 June 2007), 225. by Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa posted to amino-acids codons computing trna by rsandie on 2007-07-27 16:39:50 as along with 4 people raft Ema Cortel wenhan
	Plant acquisition of organic nitrogen in boreal forests [My Copy] pp. 419-426. by T. Nasholm, J. Persson posted to 2007-70 amino-acids methods review by agallet on 2007-05-16 19:56:20 as
	Sorption regulates the fate of the amino acids lysine and leucine in soil aggregates [My Copy] European Journal of Soil Science, Vol. 57, No. 3. (June 2006), pp. 320-329. by Vieuble, D. L. Jones, C. Chenu posted to 14c 2007-67 amino-acids immobilization mineralization sorption by agallet on 2007-05-16 19:28:10 as
	Plant amino acid uptake, soluble N turnover and microbial N capture in soils of a grazed Arctic salt marsh [My Copy] Journal of Ecology, Vol. 91, No. 4. (2003), pp. 627-636. by Hugh A. Henry, Robert L. Jefferies posted to 13c 15n 2007-65 amino-acids arctic salt_marsh by agallet on 2007-05-16 19:23:45 as
	Alpine plants show species-level differences in the uptake of organic and inorganic nitrogen [My Copy] pp. 283-292. by A. E. Miller, W. D. Bowman posted to 13c 15n 2007-64 alpine amino-acids by agallet on 2007-05-16 19:21:42 as
	Amino Acid Absorption by Arctic Plants: Implications for Plant Nutrition and Nitrogen Cycling [My Copy] Ecology, Vol. 75, No. 8. (1994), pp. 2373-2383. by Knut Kielland posted to 2007-61 absorption amino-acids arctic_ecosystems in_vitro by agallet on 2007-05-16 19:12:43 as
	Inter-specific variability in organic nitrogen uptake of three temperate grassland species [My Copy] Journal of Plant Nutrition and Soil Science, Vol. 166, No. 5. (2003), pp. 606-611. by Alexandra Weigelt, Rosalind King, Roland Bol, Richard D. Bardgett posted to 13c 15n 2007-55 amino-acids grassland by agallet on 2007-05-16 19:01:38 as
	Plant-microbe competition for soil amino acids in the alpine tundra: effects of freeze-thaw and dry-rewet events [My Copy] Oecologia, Vol. 113, No. 3. (28 January 1998), pp. 406-414. by David A. Lipson, Russell K. Monson posted to 2007-54 amino-acids competition dry-rewet freeze-thaw microbes by agallet on 2007-05-16 19:00:17 as
	A GC-MS method for determination of amino acid uptake by plants [My Copy] Physiologia Plantarum, Vol. 113, No. 3. (2001), pp. 352-358. by Jorgen Persson, Torgny Nasholm posted to gc-ms amino-acids 2007-48 13c15n by agallet on 2007-02-07 22:17:54 as

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rareaa	8
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archaea	3
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molecular-dynamics-simulations	3
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side-chain	3
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dry-rewet	1
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freeze-thaw	1
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gc-ms	1
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in_vitro	1
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