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Tag arabidopsis [537 articles]

Recent papers classified by the tag arabidopsis.
  • The 20S proteasome gene family in Arabidopsis thaliana.
    FEBS Lett, Vol. 416, No. 3. (27 October 1997), pp. 281-285.
    by Y Parmentier, D Bouchez, J Fleck, P Genschik
    posted to arabidopsis gene-duplication plant proteasome by zhlei on 2005-04-12 04:00:58 as **
  • Plant responses to ethylene gas are mediated by SCF(EBF1/EBF2)-dependent proteolysis of EIN3 transcription factor.
    Cell, Vol. 115, No. 6. (12 December 2003), pp. 667-677.
    by H Guo, JR Ecker
    posted to arabidopsis plant proteasome by zhlei on 2005-06-23 02:49:09 as **
  • Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome.
    Plant J, Vol. 18, No. 5. (June 1999), pp. 529-539.
    by H Fu, JH Doelling, DM Rubin, RD Vierstra
    posted to arabidopsis gene-duplication plant proteasome by zhlei on 2005-04-15 20:32:34 as **
  • Molecular organization of the 20S proteasome gene family from Arabidopsis thaliana.
    Genetics, Vol. 149, No. 2. (June 1998), pp. 677-692.
    by H Fu, JH Doelling, CS Arendt, M Hochstrasser, RD Vierstra
    posted to arabidopsis gene-duplication plant proteasome structure by zhlei on 2005-04-15 20:04:48 as **
  • Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms.
    J Biol Chem, Vol. 279, No. 8. (20 February 2004), pp. 6401-6413.
    by P Yang, H Fu, J Walker, CM Papa, J Smalle, YM Ju, RD Vierstra
    posted to arabidopsis gene-duplication plant proteasome by zhlei on 2005-04-15 20:03:41 as **
  • The hidden duplication past of Arabidopsis thaliana.
    Proc Natl Acad Sci U S A, Vol. 99, No. 21. (15 October 2002), pp. 13627-13632.
    by C Simillion, K Vandepoele, MC Van Montagu, M Zabeau, Y Van de Peer
    posted to arabidopsis gene-duplication plant by zhlei on 2005-06-23 14:58:58 as **
  • High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis.
    Genome Res, Vol. 16, No. 6. (June 2006), pp. 787-795.
    by MA West, H van Leeuwen, A Kozik, DJ Kliebenstein, RW Doerge, DA St Clair, RW Michelmore
    posted to arabidopsis chip microarray sfp by xwbcn on 2006-06-14 07:54:19 as ***** along with 1 person RMGraze
  • The timing of developmental transitions in plants.
    Cell, Vol. 125, No. 4. (19 May 2006), pp. 655-664.
    by I Bäurle, C Dean
    posted to arabidopsis comparative_study expression flowering by xwbcn on 2006-07-20 08:41:17 as *** along with 2 people tardigrade Happybene
  • Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction.
    PLoS Genet, Vol. 1, No. 2. (August 2005)
    by C Seoighe, C Gehring, LD Hurst
    posted to arabidopsis chip expression flowering intron microarray pollen by xwbcn on 2006-08-01 13:47:09 as *** along with 1 person bpcusack
  • Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
    Proc Natl Acad Sci U S A (31 March 2006)
    by Ji-Young Y Lee, Juliette Colinas, Jean Y Y Wang, Daniel Mace, Uwe Ohler, Philip N N Benfey
    posted to arabidopsis microarray mirna motif tf by xwbcn on 2006-04-05 02:16:36 as *** along with 2 people and 1 group cdawson dlmace GIG
  • Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis.
    Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232.
    by C Benedict, M Geisler, J Trygg, N Huner, V Hurry
    posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as ** along with 1 person natstreet
  • Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana.
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3074-3081.
    by W Zhang, J Ruan, TH Ho, Y You, T Yu, RS Quatrano
    posted to arabidopsis microarray motif by xwbcn on 2006-05-02 18:55:11 as ***** along with 2 people imouthesmp natstreet
  • Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
    Science (24 April 2008), 1157956.
    by Katja Baerenfaller, Jonas Grossmann, Monica A Grobei, Roger Hull, Matthias Hirsch-Hoffmann, Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky
    posted to system_biology proteome arabidopsis by xwbcn on 2008-04-27 17:35:19 as ** along with 4 people megraw timflutre renatomilani caseybrown
  • Novel and Stress-Regulated MicroRNAs and Other Small RNAs from Arabidopsis
    Plant Cell, Vol. 16, No. 8. (1 August 2004), pp. 2001-2019.
    by Ramanjulu Sunkar, Jian-Kang Zhu
    posted to arabidopsis mirna rice by xwbcn on 2006-03-22 02:21:57 as *** along with 1 person and 1 group cdawson GIG
  • A microarray analysis of the rice transcriptome and its comparison to Arabidopsis.
    Genome Res, Vol. 15, No. 9. (September 2005), pp. 1274-1283.
    by L Ma, C Chen, X Liu, Y Jiao, N Su, L Li, X Wang, M Cao, N Sun, X Zhang, J Bao, J Li, S Pedersen, L Bolund, H Zhao, L Yuan, GK Wong, J Wang, XW Deng, J Wang
    posted to arabidopsis chip genome rice by xwbcn on 2006-01-14 07:15:17 as **
  • Genome-Wide Analysis of the Cyclin Family in Arabidopsis and Comparative Phylogenetic Analysis of Plant Cyclin-Like Proteins
    Plant Physiol., Vol. 135, No. 2. (1 June 2004), pp. 1084-1099.
    by Guanfang Wang, Hongzhi Kong, Yujin Sun, Xiaohong Zhang, Wei Zhang, Naomi Altman, Claude W Depamphilis, Hong Ma
    posted to arabidopsis evolution phylogenetics by xwbcn on 2006-03-25 16:17:27 as ***
  • A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation
    PNAS, Vol. 102, No. 33. (16 August 2005), pp. 11934-11939.
    by Julie Misson, Kashchandra G Raghothama, Ajay Jain, Juliette Jouhet, Maryse A Block, Richard Bligny, Philippe Ortet, Audrey Creff, Shauna Somerville, Norbert Rolland, Patrick Doumas, Philippe Nacry, Luis Herrerra-Estrella, Laurent Nussaume, Marie-Christine Thibaud
    posted to arabidopsis chip by xwbcn on 2006-03-25 16:16:58 as **** along with 1 person byy
  • Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
    Science, Vol. 302, No. 5646. (31 October 2003), pp. 842-846.
    by Kayoko Yamada, Jun Lim, Joseph M Dale, Huaming Chen, Paul Shinn, Curtis J Palm, Audrey M Southwick, Hank C Wu, Christopher Kim, Michelle Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X Liu, Bao Lam, Hitomi Sakano, Troy Wu, Guixia Yu, Molly Miranda, Hong L Quach, Matthew Tripp, Charlie H Chang, Jeong M Lee, Mitsue Toriumi, Marie M Chan, Carolyn C Tang, Courtney S Onodera, Justine M Deng, Kenji Akiyama, Yasser Ansari, Takahiro Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, Akiko Enju, Andrew D Goldsmith, Mani Gurjal, Nancy F Hansen, Yoshihide Hayashizaki, Chanda Johnson-Hopson, Vickie W Hsuan, Kei Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, Paul X Jiang, Ted Jones, Jun Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, Mari Narusaka, Motoaki Seki, Tetsuya Sakurai, Masakazu Satou, Racquel Tamse, Maria Vaysberg, Erika K Wallender, Cecilia Wong, Yuki Yamamura, Shiaulou Yuan, Kazuo Shinozaki, Ronald W Davis, Athanasios Theologis, Joseph R Ecker
    posted to arabidopsis chip comparative_study microarray by xwbcn on 2006-05-18 03:00:13 as ***** along with 2 people and 1 group sdinka kaspermunch Bioinformatics
  • A Molecular Framework for Plant Regeneration
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 385-388.
    by Jian Xu, Hugo Hofhuis, Renze Heidstra, Michael Sauer, Jiri Friml, Ben Scheres
    posted to arabidopsis flowering regeneration by xwbcn on 2006-03-02 03:21:02 as ** along with 3 people and 1 group cfleet cdawson tuliproot GIG
  • Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid.
    Plant Cell (13 July 2007)
    by Hans van Leeuwen, Daniel J J Kliebenstein, Marilyn A L A West, Kyunga Kim, Remco van Poecke, Fumiaki Katagiri, Richard W W Michelmore, Rebecca W W Doerge, Dina A A St Clair
    posted to arabidopsis natural_variation salicylic_acid transcriptome by xwbcn on 2007-09-30 02:53:21 as ** along with 1 person natstreet
  • Hd3a Protein Is a Mobile Flowering Signal in Rice.
    Science (19 April 2007)
    by Shojiro Tamaki, Shoichi Matsuo, Hann Ling L Wong, Shuji Yokoi, Ko Shimamoto
    posted to arabidopsis flowering promoter rice by xwbcn on 2007-04-22 08:33:26 as **
  • Identification of plant promoter constituents by analysis of local distribution of short sequences
    BMC Genomics, Vol. 8 (08 March 2007), 67.
    by Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata, Teshuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe
    posted to arabidopsis comparative_study g genome motif promoter rice by xwbcn on 2007-05-02 08:08:59 as ** along with 5 people and 1 group kengg saru byy Jporci natstreet Plantandetc
  • Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea.
    Plant Physiol (6 October 2006)
    by Georg Haberer, Michael T T Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F Mayer
    posted to arabidopsis chip comparative_study genome microarray motif promoter by xwbcn on 2006-10-13 02:53:11 as ** along with 4 people and 1 group dpollard kengg nklee xili03 EisenLab
  • Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.
    Physiol Genomics, Vol. 17, No. 2. (13 April 2004), pp. 87-100.
    by J Yazaki, Z Shimatani, A Hashimoto, Y Nagata, F Fujii, K Kojima, K Suzuki, T Taya, M Tonouchi, C Nelson, A Nakagawa, Y Otomo, K Murakami, K Matsubara, J Kawai, P Carninci, Y Hayashizaki, S Kikuchi
    posted to arabidopsis chip genome microarray motif rice by xwbcn on 2006-03-07 09:50:02 as *****
  • Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine.
    Genome Res (19 January 2006)
    by Yunhai Li, Kee Khoon K Lee, Sean Walsh, Caroline Smith, Sophie Hadingham, Karim Sorefan, Gavin Cawley, Michael W W Bevan
    posted to arabidopsis chip motif by xwbcn on 2006-04-04 14:20:09 as **
  • Evolution in action: following function in duplicated floral homeotic genes.
    Curr Biol, Vol. 15, No. 16. (23 August 2005), pp. 1508-1512.
    by B Causier, R Castillo, J Zhou, R Ingram, Y Xue, Z Schwarz-Sommer, B Davies
    posted to arabidopsis evolution by xwbcn on 2005-12-26 12:31:10 as **
  • Prediction of plant microRNA targets.
    Cell, Vol. 110, No. 4. (23 August 2002), pp. 513-520.
    by MW Rhoades, BJ Reinhart, LP Lim, CB Burge, B Bartel, DP Bartel
    posted to arabidopsis comparative_study data_mining method mirna plants by xwbcn on 2007-07-01 17:13:13 as ** along with 1 person and 1 group cdawson GIG
  • Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
    Science, Vol. 317, No. 5836. (20 July 2007), pp. 338-342.
    by Richard M Clark, Gabriele Schweikert, Christopher Toomajian, Stephan Ossowski, Georg Zeller, Paul Shinn, Norman Warthmann, Tina T Hu, Glenn Fu, David A Hinds, Huaming Chen, Kelly A Frazer, Daniel H Huson, Bernhard Scholkopf, Magnus Nordborg, Gunnar Ratsch, Joseph R Ecker, Detlef Weigel
    posted to arabidopsis native_variation polymorphism by xwbcn on 2007-07-26 08:15:38 as ** along with 3 people and 1 group dandaman sstoma braingrind VirtualPlants
  • Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
    Genome Biology, Vol. 8 (11 January 2007), R7.
    by Rodrigo A Gutierrez, Laurence Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E Shasha, Gloria M Coruzzi
    posted to arabidopsis chip comparative_study expression gene_ontology genome microarray networks transcriptome by xwbcn on 2007-03-24 08:24:08 as **
  • An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach.
    Plant Cell, Vol. 18, No. 12. (December 2006), pp. 3617-3634.
    by R Deeken, JC Engelmann, M Efetova, T Czirjak, T Müller, WM Kaiser, O Tietz, M Krischke, MJ Mueller, K Palme, T Dandekar, R Hedrich
    posted to arabidopsis expression tumor by xwbcn on 2007-05-17 04:04:44 as **
  • A gene expression map of Arabidopsis thaliana development
    Nature Genetics, Vol. 37, No. 5. (03 April 2005), pp. 501-506.
    by Markus Schmid, Timothy S Davison, Stefan R Henz, Utz J Pape, Monika Demar, Martin Vingron, Bernhard Schölkopf, Detlef Weigel, Jan U Lohmann
    posted to arabidopsis chip comparative_study microarray by xwbcn on 2006-07-06 16:16:47 as ***** along with 3 people and 1 group scuffster natstreet p2vani Botany and Plant Sciences
  • Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation.
    Plant Physiol, Vol. 138, No. 2. (June 2005), pp. 744-756.
    by C Pina, F Pinto, JA Feijó, JD Becker
    posted to arabidopsis chip comparative_study microarray pollen by xwbcn on 2006-06-16 16:03:36 as ***
  • Comparative analysis of the Arabidopsis pollen transcriptome.
    Plant Physiol, Vol. 132, No. 2. (June 2003), pp. 640-652.
    by D Honys, D Twell
    posted to arabidopsis chip comparative_study microarray by xwbcn on 2006-06-16 15:01:35 as ***
  • A MADS domain gene involved in the transition to flowering in Arabidopsis.
    Plant J, Vol. 24, No. 5. (December 2000), pp. 591-599.
    by R Borner, G Kampmann, J Chandler, R Gleissner, E Wisman, K Apel, S Melzer
    posted to a arabidopsis domain flowering gene in involved mads the to transition by xixibio on 2006-04-19 13:43:18 as ** along with 1 person Happybene
  • An Arabidopsis Example of Association Mapping in Structured Samples
    PLoS Genetics, Vol. preprint, No. 2006. (1 November 2006), e4.eor.
    by Keyan Zhao, Maria J Aranzana, Sung Kim, Clare Lister, Chikako Shindo, Chunlao Tang, Christopher Toomajian, Honggang Zheng, Caroline Dean, Paul Marjoram, Magnus Nordborg
    posted to arabidopsis association popgen by vplagnol on 2007-01-06 14:24:41 as *****
  • Nucleotide Sequence Variation at Two Genes of the Phenylpropanoid Pathway, the FAH1 and F3H Genes, in Arabidopsis thaliana
    Mol Biol Evol, Vol. 18, No. 1. (1 January 2001), pp. 1-9.
    by Montserrat Aguade
    posted to arabidopsis by vplagnol on 2006-09-30 09:48:56 as **
  • Quantification of transcription factor expression from Arabidopsis images
    Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e323-331.
    by Daniel L Mace, Ji-Young Lee, Richard W Twigg, Juliette Colinas, Philip N Benfey, Uwe Ohler
    posted to arabidopsis image-analysis root by uwe on 2007-11-30 19:04:08 as read along with 1 person juliettecolinas
  • Gene Families from the Arabidopsis thaliana Pollen Coat Proteome
    Science, Vol. 292, No. 5526. (29 June 2001), pp. 2482-2485.
    by Jacob A Mayfield, Aretha Fiebig, Sarah E Johnstone, Daphne Preuss
    posted to pollen-coat arabidopsis by tommcdonagh on 2008-07-24 10:03:42 as **
  • MicroRNA-mediated regulation of stomatal development in Arabidopsis.
    Plant Cell, Vol. 19, No. 8. (August 2007), pp. 2417-2429.
    by C Kutter, H Schöb, M Stadler, F Meins, A Si-Ammour
    posted to arabidopsis development evodevo mirna plants by stajich on 2007-12-24 03:27:27 as ** along with 1 group Berkeley Mycology
  • A Gene Expression Map of the Arabidopsis Root
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1956-1960.
    by Kenneth Birnbaum, Dennis E Shasha, Jean Y Wang, Jee W Jung, Georgina M Lambert, David W Galbraith, Philip N Benfey
    posted to arabidopsis gene map root situ by sstoma on 2007-04-23 16:54:20 as ***** along with 2 people and 2 groups kengg cpib_list VirtualPlants CPIB
  • Auxin transport -- shaping the plant
    Current Opinion in Plant Biology, Vol. 6, No. 1. (February 2003), pp. 7-12.
    by Jiri Friml
    posted to arabidopsis auxin root_meristem shoot_meristem by smithco on 2005-12-20 21:51:07 as ** along with 3 people and 2 groups balicea sstoma TristanBitardFeildel Plant-Tissue-Simulation VirtualPlants
  • Quantitative Modeling of Arabidopsis Development
    Plant Physiol., Vol. 139, No. 2. (1 October 2005), pp. 960-968.
    by Lars Mündermann, Yvette Erasmus, Brendan Lane, Enrico Coen, Przemyslaw Prusinkiewicz
    posted to arabidopsis l-systems by smithco on 2006-02-07 14:55:43 as read along with 1 person and 1 group gilgamec Plant-Tissue-Simulation
  • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Nature (17 February 2008)
    by Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen
    posted to arabidopsis bisulphite methylation pattern sequencing by slonik on 2008-04-06 23:38:31 as **** along with 4 people djkt ghattem epigenetics mdimon
  • Independent origins of self-compatibility in Arabidopsis thaliana
    Molecular Ecology, Vol. 17, No. 2. (January 2008), pp. 704-714.
    by Kentaro K Shimizu, RIE Shimizu-Inatsugi, Takashi Tsuchimatsu, Michael D Purugganan
    posted to si self incompatibility follow-up arabidopsis by skumagai on 2008-06-09 14:22:54 as read
  • Epigenetic Natural Variation in Arabidopsis thaliana.
    PLoS Biol, Vol. 5, No. 7. (19 June 2007)
    by Matthew W W Vaughn, Miloš Tanurd Ić, Zachary Lippman, Hongmei Jiang, Robert Carrasquillo, Pablo D D Rabinowicz, Neilay Dedhia, W Richard R McCombie, Nicolas Agier, Agnès Bulski, Vincent Colot, R W W Doerge, Robert A A Martienssen
    posted to arabidopsis cpg epigenetics methylation polymorphism sirna transposon by sebastien_vigneau on 2007-07-12 09:04:16 as ** along with 1 person and 1 group kengg Plantandetc
  • Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed
    The Plant Journal, Vol. 41, No. 5. (March 2005), pp. 697-709.
    by Kazumi Nakabayashi, Masanori Okamoto, Tomokazu Koshiba, Yuji Kamiya, Eiji Nambara
    posted to arabidopsis by sdinka on 2005-03-05 23:58:54 as ***
  • Mutations in Arabidopsis acyl-CoA oxidase genes reveal distinct and overlapping roles in beta-oxidation
    The Plant Journal, Vol. 41, No. 6. (March 2005), pp. 859-874.
    by Raquel R Adham, Bethany K Zolman, Arthur Millius, Bonnie Bartel
    posted to arabidopsis cloned gene positional by sdinka on 2005-03-05 23:46:29 as ***
  • Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping.
    Plant Physiol, Vol. 132, No. 2. (June 2003), pp. 469-484.
    by W Zhu, SD Schlueter, V Brendel
    posted to annotation arabidopsis est genome by Schmidtc on 2005-10-19 13:11:39 as ***
  • Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion.
    Genome Res (24 January 2008)
    by Jon Reinders, Céline Delucinge Vivier, Grégory Theiler, Didier Chollet, Patrick Descombes, Jerzy Paszkowski
    posted to arabidopsis columbia dna epigenetics methylation mutant plant by rschulz on 2008-01-28 09:40:38 as **
  • Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays.
    PLoS Genet, Vol. 4, No. 3. (March 2008)
    by X Zhang, S Shiu, A Cal, JO Borevitz
    posted to arabidopsis dna-methylation epigenetics microarray plant snp whole-genome by rschulz on 2008-03-31 09:34:11 as ** along with 1 person talponer
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