Tag arabidopsis [at least 200 articles] Export

Recent papers classified by the tag arabidopsis.

	Characterization of Arabidopsis 6-phosphogluconolactonase T-DNA insertion mutants reveals an essential role for the oxidative section of the plastidic pentose phosphate pathway in plant growth and development. [My Copy] Plant & cell physiology, Vol. 50, No. 7. (July 2009), pp. 1277-1291. by Yuqing Xiong, Christopher DeFraia, Donna Williams, Xudong Zhang, Zhonglin Mou posted to subcellular_compartments salicylic_acid redox_potential pseudomonas plastids plant_growth_and_development pgl3 pathway pathogenesis localization knockdown isoforms gene_expression dramatic_decrease defense_responses arabidopsis by yqxiong on 2009-11-08 21:59:36 as
	Interactions between Auxin and Strigolactone in Shoot Branching Control [My Copy] Plant Physiol., Vol. 151, No. 1. (1 September 2009), pp. 400-412. by Alice Hayward, Petra Stirnberg, Christine Beveridge, Ottoline Leyser posted to shoot-branching hormone arabidopsis by Keywan to the group Ondex SABR - Bioenergy project on 2009-11-06 11:32:50 as
	Effects of Gene Expression on Molecular Evolution in Arabidopsis thaliana and Arabidopsis lyrata [My Copy] Mol Biol Evol, Vol. 21, No. 9. (1 September 2004), pp. 1719-1726. by Stephen I. Wright, C. B. Kenneth Yau, Mark Looseley, Blake C. Meyers posted to genomic_parameters expression_evolution arabidopsis by daveGerrard on 2009-11-05 13:19:39 as
	Real-time RT-PCR profiling of over 1400 <i>Arabidopsis</i> transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes [My Copy] The Plant Journal, Vol. 38, No. 2. (2004), pp. 366-379. by Tomasz Czechowski, Rajendra P. Bari, Mark Stitt, Wolf-Rüdiger Scheible, Michael K. Udvardi posted to real-time methods arabidopsis by mlog on 2009-11-04 18:09:50 as along with 1 person and 1 group cdawson GIG
	A Genome-scale Metabolic Model of Arabidopsis thaliana and Some of its Properties. [My Copy] Plant physiology (15 September 2009) by Mark G. Poolman, Laurent Miguet, Lee J. Sweetlove, David A. Fell posted to plant metabolic_reconstruction arabidopsis by schwartzjmc on 2009-11-04 17:18:55 as
	Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots [My Copy] BMC Genomics, Vol. 9, No. 1. (28 April 2008), 194. by Elke Mangelsen, Joachim Kilian, Kenneth Berendzen, et al.Uner Kolukisaoglu, Klaus Harter, Christer Jansson, Dierk Wanke posted to wrky gene_expression_analysis barley arabidopsis by mpizbioinfo on 2009-11-02 17:32:39 as along with 2 people tonia_schwartz moborg
	PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update [My Copy] Nucl. Acids Res. (30 October 2009), gkp810. by Pawel Durek, Robert Schmidt, Joshua L. Heazlewood, et al.Alexandra Jones, Daniel MacLean, Axel Nagel, Birgit Kersten, Waltraud X. Schulze posted to plant phosphorylation database arabidopsis by neils on 2009-11-02 04:18:46 as
	Genome-wide mapping of alternative splicing in Arabidopsis thaliana. [My Copy] Genome research (26 October 2009) by Sergei A. Filichkin, Henry D. Priest, Scott A. Givan, et al.Rongkun Shen, Douglas W. Bryant, Samuel E. Fox, Weng-Keen K. Wong, Todd C. Mockler posted to plant genome-wide-survey genome-analysis arabidopsis by kshameer on 2009-10-29 06:57:08 as along with 3 people bpcusack GeeSharpMinor natstreet
	Divergence in expression between duplicated genes in Arabidopsis. [My Copy] Molecular biology and evolution, Vol. 24, No. 10. (1 October 2007), pp. 2298-2309. by Eric W. Ganko, Blake C. Meyers, Todd J. Vision posted to gene_duplication expression_evolution arabidopsis by daveGerrard on 2009-10-28 11:04:19 as along with 1 person gjuggler
	Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 20. (15 October 2009), pp. 2677-2684. by Kengo Kinoshita, Takeshi Obayashi posted to principal_components microarray co-expression arabidopsis by daveGerrard to the group BergmanLab on 2009-10-28 09:20:16 as along with 3 people kintoki rdiaz natstreet
	Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing [My Copy] Plant Physiol. (23 October 2009), pp.109.147280. by Li-Ching Hsieh, Shu-I Lin, Arthur C. Shih, et al.June-Wei Chen, Wei-Yi Lin, Ching-Ying Tseng, Wen-Hsiung Li, Tzyy-Jen Chiou posted to srna arabidopsis by druvus on 2009-10-26 07:42:57 as
	Arabidopsis gene co-expression network and its functional modules [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 346. by Linyong Mao, John Van Hemert, Sudhansu Dash, Julie Dickerson posted to transcriptional dataset co-expression arabidopsis by venancio on 2009-10-23 18:26:48 as along with 3 people dolchan Borelli druvus
	How Athila retrotransposons survive in the Arabidopsis genome [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 219. by Antonio Marco, Ignacio Marin posted to thaliana te recombination arabidopsis by timflutre on 2009-10-22 16:07:09 as along with 1 person mariakmejia
	The allotetraploid Arabidopsis thaliana–Arabidopsis lyrata subsp. petraea as an alternative model system for the study of polyploidy in plants [My Copy] Molecular Genetics and Genomics, Vol. 281, No. 4. (1 April 2009), pp. 421-435. by Julien Beaulieu, Martine Jean, François Belzile posted to polyploidy arabidopsis by echinotrix on 2009-10-22 09:15:29 as
	Mitotic instability in resynthesized and natural polyploids of the genus Arabidopsis (Brassicaceae) [My Copy] Am. J. Bot. (13 August 2009), ajb.0800270. by Kirsten M. Wright, J. Chris Pires, Andreas Madlung posted to polyploidy arabidopsis by echinotrix on 2009-10-22 08:57:58 as
	Requirements for intron-mediated enhancement of gene expression in Arabidopsis. [My Copy] RNA, Vol. 8, No. 11. (November 2002), pp. 1444-1453. by Alan B. Rose posted to rose intron arabidopsis alan by climb0910 on 2009-10-22 07:33:54 as along with 1 person byy
	Effect of 5'UTR introns on gene expression in Arabidopsis thaliana [My Copy] BMC Genomics, Vol. 7, No. 1. (2006), 120. by Betty Chung, Cas Simons, Andrew Firth, Chris Brown, Roger Hellens posted to korf arabidopsis by climb0910 on 2009-10-21 18:36:39 as along with 3 people dandaman byy bertelsen
	EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels [My Copy] The Plant Journal, Vol. 49, No. 5. (23 January 2007), pp. 829-839. by Thomas Eulgem, Tokuji Tsuchiya, Xiao-Jun Wang, et al.Britt Beasley, Alayne Cuzick, Mahmut Tör, Tong Zhu, John M. McDowell, Eric Holub, Jeffery L. Dangl posted to resistance peronospora hormone arabidopsis 2007 by gaulin on 2009-10-13 17:49:32 as along with 1 person saru
	AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (23 June 2003), 25. by Ramana Davuluri, Hao Sun, Saranyan Palaniswamy, et al.Nicole Matthews, Carlos Molina, Mike Kurtz, Erich Grotewold posted to pattern arabidopsis by lichtenj on 2009-10-12 13:34:39 as along with 3 people and 1 group Borelli kengg ep161302 Plantandetc
	The word landscape of the non-coding segments of the Arabidopsis thaliana genome [My Copy] BMC Genomics, Vol. 10, No. 1. (08 October 2009), 463. by Jens Lichtenberg, Alper Yilmaz, Joshua Welch, et al.Kyle Kurz, Xiaoyu Liang, Frank Drews, Klaus Ecker, Stephen Lee, Matt Geisler, Erich Grotewold, Lonnie Welch posted to signature regulatory pattern motif genomic discovery arabidopsis by lichtenj on 2009-10-12 13:22:12 as along with 2 people druvus natstreet
	Characterization of unknown genetic modifications using high throughput sequencing and computational subtraction [My Copy] BMC Biotechnology, Vol. 9, No. 1. (08 October 2009), 87. by Torstein Tengs, Haibo Zhang, Arne H. Jensen, et al.Jon Bohlin, Melinka Butenko, Anja B. Kristoffersen, Hilde Gunn Opsahl Sorteberg, Knut Berdal posted to next_generation gmo biodefense arabidopsis by druvus on 2009-10-12 10:04:16 as
	Sequencing of natural strains of Arabidopsis thaliana with short reads [My Copy] Genome Research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 10 people and 2 groups APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Imprinting of the polycomb group gene MEDEA serves as a ploidy sensor in Arabidopsis. [My Copy] PLoS genetics, Vol. 5, No. 9. (25 September 2009), e1000663. by Aleksandra Erilova, Lynette Brownfield, Vivien Exner, et al.Marisa Rosa, David Twell, Ortrun Mittelsten Scheid, Lars Hennig, Claudia Köhler posted to polyploidy medea imprinting arabidopsis by rschulz on 2009-10-05 09:09:11 as along with 1 person maren
	Genome Size Variation among Accessions of Arabidopsis thaliana [My Copy] Annals of Botany (March 2004), pp. 317-321. by S. Heike Schmuth, R. Armin Meiste, S. Ralf Horre, N. Konrad Bachman posted to thaliana genome_sizes arabidopsis by timflutre on 2009-09-30 11:12:17 as
	The capacity for multistability in small gene regulatory networks. [My Copy] BMC systems biology, Vol. 3, No. 1. (21 September 2009), 96. by Dan Siegal-Gaskins, Erich Grotewold, Gregory D. Smith posted to trichome arabidopsis bistability by dantimatter on 2009-09-26 18:33:22 as along with 1 person heliopais
	Recombination and linkage disequilibrium in Arabidopsis thaliana [My Copy] Nature Genetics, Vol. 39, No. 9. (05 August 2007), pp. 1151-1155. by Sung Kim, Vincent Plagnol, Tina T. Hu, et al.Christopher Toomajian, Richard M. Clark, Stephan Ossowski, Joseph R. Ecker, Detlef Weigel, Magnus Nordborg posted to ld arabidopsis by vplagnol on 2009-09-23 17:50:08 as along with 1 person maren
	Characterization of WRKY co-regulatory networks in rice and Arabidopsis [My Copy] BMC Plant Biology, Vol. 9, No. 1. (2009), 120. by Stefano Berri, Pamela Abbruscato, Odile F. Rampant, et al.Ana Brasileiro, Irene Fumasoni, Kouji Satoh, Shoshi Kikuchi, Luca Mizzi, Piero Morandini, Mario Pe, Pietro Piffanelli posted to tf rice plant network arabidopsis by druvus on 2009-09-23 10:57:45 as along with 1 person natstreet
	Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions [My Copy] Genome Biology, Vol. 10, No. 9. (15 September 2009), R96. by Javier Carrera, Guillermo Rodrigo, Alfonso Jaramillo, Santiago Elena posted to regulatory_network arabidopsis by Borelli on 2009-09-23 08:57:03 as along with 5 people megraw TRHvidsten sotacam kiekyon natstreet
	Vernalization requires epigenetic silencing of FLC by histone methylation [My Copy] Nature, Vol. 427, No. 6970. (08 January 2004), pp. 164-167. by Ruth Bastow, Joshua S. Mylne, Clare Lister, Zachary Lippman, Robert A. Martienssen, Caroline Dean posted to epigenetics chromatin-structure arabidopsis by humburg on 2009-09-22 05:24:34 as along with 1 person Happybene
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to sequenceing bisulphite arabidopsis by druvus on 2009-09-21 12:52:24 as along with 15 people and 1 group darian iamlily1046 ychang0918 rschulz natstreet iris42 mmartin hkuhn kengg usagi-kirin djkt ghattem epigenetics mdimon slonik KCL & UCL Bioinformatics
	Genetic pathways controlling carpel development inArabidopsis thaliana [My Copy] Journal of Plant Research, Vol. 111, No. 2. (1 June 1998), pp. 295-298. by John Alvarez, David Smyth posted to development carpel arabidopsis by mlog on 2009-09-21 00:05:51 as
	LEUNIG has multiple functions in gynoecium development in Arabidopsis. [My Copy] Genesis (New York, N.Y. : 2000), Vol. 26, No. 1. (January 2000), pp. 42-54. by C. Chen, S. Wang, H. Huang posted to development arabidopsis by mlog on 2009-09-21 00:00:55 as
	A spatial dissection of the Arabidopsis floral transcriptome by MPSS [My Copy] BMC Plant Biology, Vol. 8, No. 1. (21 April 2008), 43. by Jason Peiffer, Shail Kaushik, Hajime Sakai, et al.Mario A. Vazquez, Nidia S. Leon, Hassan Ghazal, Jean Philippe Vielle Calzada, Blake Meyers posted to transcriptome_analysis mutants genomics gene_regulation flower arabidopsis by mlog on 2009-09-20 17:44:08 as
	Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes [My Copy] Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110. by J. L. Riechmann, J. Heard, G. Martin, et al.L. Reuber, -Z, Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, R. R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J. Z. Zhang, D. Ghandehari, B. K. Sherman, -L posted to genomes evolution arabidopsis all_plants by mlog on 2009-09-20 15:36:15 as along with 6 people and 2 groups megraw tny nickluscombe kengg Hummel hplatero EBI-regulation Plantandetc
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to regulatory_network gene_regulatory_networks arabidopsis by Borelli on 2009-09-11 23:07:36 as along with 9 people idonaldson pengchy ptrobajo danmaclean TRHvidsten rmk barriot natstreet druvus
	The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 750-759. by Gang Wu, Mee Yeon Y. Park, Susan R. Conway, Jia-Wei W. Wang, Detlef Weigel, R. Scott Poethig posted to sara microrna juvenile arabidopsis adult by ptrobajo on 2009-09-11 20:49:50 as along with 2 people natstreet valeriehilgers
	Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 15. (13 April 2004), pp. 5589-5594. by Xiaoyu Zhang, Susan R. Wessler posted to transposable_elements thaliana plants genomics arabidopsis by timflutre on 2009-09-07 09:12:24 as along with 1 person operon
	System-wide molecular evidence for phenotypic buffering in Arabidopsis [My Copy] Nat Genet, Vol. 41, No. 2. (25 February 2009), pp. 166-167. by Jingyuan Fu, Joost J. B. Keurentjes, Harro Bouwmeester, et al.Twan America, Francel W. A. Verstappen, Jane L. Ward, Michael H. Beale, Ric C. H. de Vos, Martijn Dijkstra, Richard A. Scheltema, Frank Johannes, Maarten Koornneef, Dick Vreugdenhil, Rainer Breitling, Ritsert C. Jansen posted to arabidopsis by mingzhi on 2009-08-13 17:49:10 as along with 1 person TRHvidsten
	Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. [My Copy] Chemistry & biology, Vol. 16, No. 6. (26 June 2009), pp. 594-604. by Bert De Rybel, Dominique Audenaert, Grégory Vert, et al.Wilfried Rozhon, Juliane Mayerhofer, Frank Peelman, Silvie Coutuer, Tinneke Denayer, Leentje Jansen, Long Nguyen, Isabelle Vanhoutte, Gerrit T. Beemster, Kris Vleminckx, Claudia Jonak, Joanne Chory, Dirk Inzé, Eugenia Russinova, Tom Beeckman posted to arabidopsis chemical-biology small-molecule by kengg on 2009-08-11 11:03:34 as
	Comparative Evolutionary Analysis of Chalcone Synthase and Alcohol Dehydrogenase Loci in Arabidopsis, Arabis, and Related Genera (Brassicaceae) [My Copy] Mol Biol Evol, Vol. 17, No. 10. (1 October 2000), pp. 1483-1498. by Marcus A. Koch, Bernhard Haubold, Thomas Mitchell-Olds posted to arabidopsis dating molecular_clock by dandaman on 2009-08-10 10:39:58 as along with 1 person and 1 group ArtemPankin Khavkin's lab
	Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana. [My Copy] Genetics, Vol. 168, No. 3. (November 2004), pp. 1575-1584. by Helmi Kuittinen, Anita A. de Haan, Claus Vogl, et al.Sami Oikarinen, Johanna Leppälä, Marcus Koch, Tom Mitchell-Olds, Charles H. Langley, Outi Savolainen posted to arabidopsis dating by dandaman on 2009-08-08 14:05:56 as
	Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa [My Copy] BMC Plant Biology, Vol. 7, No. 1. (06 November 2007), 59. by Udaya Kalluri, Stephen Difazio, Amy Brunner, Gerald Tuskan posted to arabidopsis arf aux-iaa comparison genetics model_organisms plants by gonzalez on 2009-08-05 14:26:15 as along with 2 people druvus natstreet
	Transposon diversity in Arabidopsis thaliana [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 13. (20 June 2000), pp. 7376-7381. by Quang H. Le, Stephen Wright, Zhihui Yu, Thomas Bureau posted to arabidopsis transposon by orzenil on 2009-07-28 15:01:20 as along with 2 people saru timflutre
	Coding DNA repeated throughout intergenic regions of the Arabidopsis thaliana genome: evolutionary footprints of RNA silencing [My Copy] Mol. BioSyst. (2009) by Jian Feng, Daniel Q. Naiman, Bret Cooper posted to arabidopsis pyknons repeats by orzenil on 2009-07-26 01:24:57 as
	Differential epigenetic regulation within an Arabidopsis retroposon family. [My Copy] Genetics, Vol. 176, No. 1. (May 2007), pp. 151-160. by S. H. Rangwala, E. J. Richards posted to arabidopsis epigenetic transposon by orzenil on 2009-07-26 00:09:23 as
	CORONA, a Member of the Class III Homeodomain Leucine Zipper Gene Family in Arabidopsis, Regulates Stem Cell Specification and Organogenesis [My Copy] Plant Cell, Vol. 17, No. 3. (1 March 2005), pp. 691-704. by Kirsten A. Green, Michael J. Prigge, Rebecca B. Katzman, Steven E. Clark posted to arabidopsis development stem_cell wuschel by mlog on 2009-07-19 20:57:02 as along with 1 person sdinka
	Determining the conservation of DNA methylation in Arabidopsis. [My Copy] Epigenetics : official journal of the DNA Methylation Society, Vol. 4, No. 2. (February 2009), pp. 119-124. by N. Widman, S. E. Jacobsen, M. Pellegrini posted to arabidopsis dna-methylation evolution sequence-alignment by rschulz on 2009-07-15 09:41:40 as
	Genetic Interactions between DNA demethylation and methylation in Arabidopsis thaliana. [My Copy] Plant Physiol (19 October 2007) by Jon Penterman, Rie Uzawa, Robert L L. Fischer posted to arabidopsis dna methylation by iamlily1046 on 2009-07-04 09:33:24 as along with 1 person epigenetics
	SEPALLATA3: the 'glue' for MADS box transcription factor complex formation [My Copy] Genome Biology, Vol. 10, No. 2. (25 February 2009), R24. by Richard Immink, Isabella Tonaco, Stefan de Folter, et al.Anna Shchennikova, Aalt van Dijk, Jacqueline B. Lange, Jan Borst, Gerco Angenent posted to arabidopsis development mads protein by mlog on 2009-07-03 14:10:55 as along with 1 person ysyls6
	Auxin-Dependent Patterning and Gamete Specification in the Arabidopsis Female Gametophyte [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1684-1689. by Gabriela C. Pagnussat, Monica Alandete-Saez, John L. Bowman, Venkatesan Sundaresan posted to arabidopsis auxin development plants reproduction ucdavis by gonzalez on 2009-07-02 04:32:33 as along with 1 person dandaman

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flowering	162
flower	81
tfs	81
mirna	79
trichome	74
sam	71
plant	64
root	56
circadianclock	53
review	53
lfy	51
leaf	43
bioinformatics	40
printed	40
development	38
unread	36
chip	35
rice	35
tf	35
light_sensing	34
identity	33
ft	32
microarray	32
evolution	30
gene	30
circadian_clock	29
kinase	29
genome	28
network	28
vernalization	28
circadian	26
genome-wide	26
plants	26
rna	25
auxin	24
epigenetics	24
microrna	24
myb	23
thaliana	23
stm	22
histone	21
methylation	20
ap1	19
metabolite	19
photoperiod	19
lab	18
stemcell	18
clv	17
embryo	17
phytochrome	17
promoter	16
eucariotic_transcription_regulation	15
flavonoid	15
ga	15
bhlh	14
knox	14
meiosis	14
te	14
transcription	14
ag	13
database	13
disease	13
genomics	13
resistance	13
anther	12
bract	12
chromatin	12
cuc	12
expression	12
motif	12
r_gene	12
rga	12
fruit	11
patterning	11
prediction	11
prospectus	11
regulation	11
rlk	11
tfl	11
clock	10
comparative_study	10
peptide	10
sirna	10
target	10
454	9
boundary	9
co	9
hormone	9
soc1	9
transcriptome	9
agl24	8
annotation	8
cotyledon	8
methods	8
phylogeny	8
polyploidy	8
recombination	8
signaling	8
stomata	8
tfl1	8

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